These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 700 fasta sequence [CAGCCNAGAAATTCGGCCCCGCANGGTTANTGCATCGCTTAAGTGAAAAGTTTACAAAGCAATACGGAAATTCGACACCAAAGATACGCAAAAAATTGGGCATCGTTACAAGCCCGTAGCTCGTTTAGTGCAGTGTGCTTCGTAGTGTGTTGCGAGTGAGAGTGTAGTTTAGCCACCAGTTCGATTTACTTGTGCTAGTGTGAGCATTGGAAAAGAG--TTTCGTGTGAGATGTAAAGTGTGCGATAAGCGTAGGAAAACTGATAACAACACGGTCGGGGCTGCGCGAAAAGGTAGCAGGAAACACACATACTCTCTCTCTCACACTGGTATATAGCCGGCAAAGGCTGTGTGTGTTGCGAAATCAGTGCGAAACTGCATGACAATAAATGGCACAATACACGGAAGTGACCGGCGAAGGAGTTTAAGTAGCGCTGACGTAAACAATGCACGAAATATAGCGACCAAGGTGAGCAATCACATCAGGCACGGATGAGCCGGACCTACCACAGTTGGAAAGGGACAAGCAATAAGTACGGAAAGCAATTTGGAATTCATACACCAATAGCGTAGACAAGTAGTAGCGTAGTAGCACGATAAGGAATAGCGCTTGATCGTGCCAGTCAACCGCCCAGAGAAAGGATACATTCTTCTGGTGCTTGTTCGATTCATCGGCAGCTCAACGGGCGTCAGCGGCCCTCGA] [+] EMBL AL697115 [CAGCCNAGAAATTCGGCCCCGCANGGTTANTGCATCGCTTAAGTGAAAAGTTTACAAAGCAATACGGAAATTCGACACCAAAGATACGCAAAAAATTGGGCATCGTTACAAGCCCGTAGCTCGTTTAGTGCAGTGTGCTTCGTAGTGTGTTGCGAGTGAGAGTGTAGTTTAGCCACCAGTTCGATTTACTTGTGCTAGTGTGAGCATTGGAAAAGAG TTTCGTGTGAGATGTAAAGTGTG ] [+] EMBL BM640819 [ ccGCATCGCTTAGGTG AAG TTAAAAAGCAATACGGAAATTCGACACCAAAGATACGCAAAAAA TGGGCATCGTTACAAGCCCGTAGCTCGTTTAGTGCAGTGTGCTTCGTAGTGTGTTGCGAGTGAGAGTGTAGTTTAGCCACCAGTTCGATTTACTTGTGCTAGTGTGAGCATTGGAAAAGAGTTTTTCGTGTGAG TGTAAAGTGTGCGATAAGCGTAGGAAAACTGATAACAACACGGTCGGGGCTGCGCGAAAAGGTAGCAGGAAACACACATACTCTCTCTCTCACACTGGTATATAGCCGGCAAAGGCTGTGTGTGTTGCGAAATCAGTGCGAAACTGCATGACAATAAATGGCACAATACACGGAAGTGACCGGCGAAGGAGTTTAAGTAGCGCTGACGTAAACAATGCACGAAATATAGCGACCAAGGTGAGCAATCACATCAGGCACGGATGAGCCGGACCTACCACAGTTGGAAAGGGACAAGCAATAAGTACGGAAAGCAATTTGGAATTCATACACCAATAGCGTAGACAAGTAGTAGCGTAGTAGCACGATAAGGAATAGCGCTTGATCGTGCCAGTCAACCGCCCAGAGAAAGGATACATTCTTCTGGTGCTTGTTCGATTCATCGGCAGCTCAACGGGCGTCAGCGGCCCTCGA] consensusID : consensus_6593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [TCGGCACGAGGGTTATAAGCGTAGGAAAACTGATAACNACACGGTCGGGGCTGCGCGAAAAGGTAGCAGGAAACACACATACTCTCTCTCTCACACTGGTATATAGCCGGCAAAGGCTGTGTGCTGCTTGCGAAATCAGTGCGACAACTGCATGCACAATAAATGGCACAATACACGGAAGTGACCGGCGAAGGAGTTTAAGTAGCGCTGACGTAAACAATGCACGAAATATAGCGACCAAGGTGAGCAATCACATCAGGCACGGATGAGCCGGACCTACCACAGTTGGAAAGGGACAAGCAATAAGTACGGAAAGCAATTTGGAATTCATACACCAATAGCGTAGACAAGTAGTAGCGTAGGTAGCACGATAAGGAATAGCGCTTGATCGTGCCAGTCAACCGCCCAGAGAAAGGATACATTCTTCTGGTGCTTGTTCGATTCATCGGCAGCTCAACGGGCGTCAGNCGGCCCTCGAACATTCGAAAGCTTAGCGAACGCGTGAACACCGGTGCGTGTGAGACACAGGGGAACGCCACACCGATGACCATGGCAGACGATATACCTTCGTCGGCGCGCCCTGGCGTACAANAAAGCGCAGCTCGTCGATTTCGGGCCCAAGACCTGTGCTTAAGCTTGGAGGACGATCATCAGNCCACCGNTCGGGA] [+] EMBL BX469655 [TCGGCACGAGGGTTATAAGCGTAGGAAAACTGATAACNACACGGTCGGGGCTGCGCGAAAAGGTAGCAGGAAACACACATACTCTCTCTCTCACACTGGTATATAGCCGGCAAAGGCTGTGTGCTGCTTGCGAAATCAGTGCGACAACTGCATGCACAATAAATGGCACAATACACGGAAGTGACCGGCGAAGGAGTTTAAGTAGCGCTGACGTAAACAATGCACGAAATATAGCGACCAAGGTGAGCAATCACATCAGGCACGGATGAGCCGGACCTACCACAGTTGGAAAGGGACAAGCAATAAGTACGGAAAGCAATTTGGAATTCATACACCAATAGCGTAGACAAGTAGTAGCGTAGGTAGCACGATAAGGAATAGCGCTTGATCGTGCCAGTCAACCGCCCAGAGAAAGGATACATTCTTCTGGTGCTTGTTCGATTCATCGGCAGCTCAACGGGCGTCAGNCGGCCCTCGAACATTCGAAAGCTTAGCGAACGCGTGAACACCGGTGCGTGTGAGACACAGGGGAACGCCACACCGATGACCATGGCAGACGATATACCTTCGTCGGCGCGCCCTGGCGTACAANAAAGCGCAGCTCGTCGATTTCGGGCCCAAGACCTGTGCTTAAGCTTGGAGGACGATCATCAGNCCACCGNTCGGGA] consensusID : consensus_6593#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CCGCGGACGCGTGGGCGCGCTCACTTCCAAAGTCGCGGGATTCGTCGTTCGCTGATTGTAGCCACGGCCTCGGCCATACAGTGTGTGTTGCATCGCTTAGGTGAAGTTAAAAAGCAATACTGAAATTCGACACCAAAGATACGCAAAAAATGGGCATCGTTACAAGCCCGTAGCTCGTTTAGTGCAGTGTGTTTCGTAGTGTGTTGCGAGTGAGAGTGTAGTTTAGCCACCAGTTCGATTTACTTGTGCTAGTGTGAGCATTGGAAAAGAGTTTTTCATGTGAGTGTTAAGTGTGCGATAAGCGTAGGAAAACTGATAACAACACGGTCGTGGCTGCGCGAAAAGGTAGCTGGAAACACACATACTCTCTCTCTCACTGGTATATAGCCGGCAAAGGCTGTGTGTGTGTTGCGAAATCAGTGCGAAACTGCAAGACAATAAATGGCACAATACACGGAAGTGACCGGCGAAGGAGTTTAAGTAGCGCTGACGTGAACAATGCACGAAATATAGCGACCAAGGTTCGCCGTAAGCCACAGCCCCCACCGCCCACACTGCAGGACTCGCGGGGACACTGCACCAGTGAGCCCAGGCTGAATGATTCAGAAACACCACCGCCACAGAAACGACGTGGCTCGCAAAGGCGTCCAATGC] [+] EMBL BM656437 [CCGCGGACGCGTGGGCGCGCTCACTTCCAAAGTCGCGGGATTCGTCGTTCGCTGATTGTAGCCACGGCCTCGGCCATACAGTGTGTGTTGCATCGCTTAGGTGAAGTTAAAAAGCAATACTGAAATTCGACACCAAAGATACGCAAAAAATGGGCATCGTTACAAGCCCGTAGCTCGTTTAGTGCAGTGTGTTTCGTAGTGTGTTGCGAGTGAGAGTGTAGTTTAGCCACCAGTTCGATTTACTTGTGCTAGTGTGAGCATTGGAAAAGAGTTTTTCATGTGAGTGTTAAGTGTGCGATAAGCGTAGGAAAACTGATAACAACACGGTCGTGGCTGCGCGAAAAGGTAGCTGGAAACACACATACTCTCTCTCTCACTGGTATATAGCCGGCAAAGGCTGTGTGTGTGTTGCGAAATCAGTGCGAAACTGCAAGACAATAAATGGCACAATACACGGAAGTGACCGGCGAAGGAGTTTAAGTAGCGCTGACGTGAACAATGCACGAAATATAGCGACCAAGGTTCGCCGTAAGCCACAGCCCCCACCGCCCACACTGCAGGACTCGCGGGGACACTGCACCAGTGAGCCCAGGCTGAATGATTCAGAAACACCACCGCCACAGAAACGACGTGGCTCGCAAAGGCGTCCAATGC] consensusID : consensus_6593#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [ATCGCCGAGGGCATTTGGAATCATACACCAATAGCGTAGACAAGTAGTAGCGTAGTAGCACGATAAGGAATAGCGCTTGATCGTGCCAGTCAACCGCCCAGAGAAAGGATACATTCTTCTTGGTGCTTGTTCGATTCATCGGCAGCTCAACGGGCGTCAGCGGCCCTCGAACATTCGAAAGCTTAGCGAACGCGTGAACACCGGTGCGTGTGAGACACAGCGAACGCCACACCGATGACCATGGCAGACGATATACCTTCGTCGGCGCGCCCTGCGTACAAAAAGCGCAGCTCGTCGATTTCGGCCCCAGCCTGTGCTAGCTTGGAGACGATCATCAGCCCACCGTCGGAGGGCGATACGCCCGAGAGCGGCACGCCTGGCTACCGGCGAAGGAAGCCGGCGACGCGATCGCAAAGTGCACGCATCACGGGACCACGATCGGTTCGCCGTAAGCCACAGCCCCCACCGCCCACACTGCAGGACTCGCGGGGACACTGCACCAGTGAGCCCAGGCTGAATGATTCAGAAACACCACCGCCACAGAAACGACGTGGCTCGCAAAGGCGTCCAATGCACAATTCAGCAACACCAAGGAAATCGAACGCTTTTCTGG] [+] EMBL AL935010 [ATCGCCGAGGGCATTTGGAATCATACACCAATAGCGTAGACAAGTAGTAGCGTAGTAGCACGATAAGGAATAGCGCTTGATCGTGCCAGTCAACCGCCCAGAGAAAGGATACATTCTTCTTGGTGCTTGTTCGATTCATCGGCAGCTCAACGGGCGTCAGCGGCCCTCGAACATTCGAAAGCTTAGCGAACGCGTGAACACCGGTGCGTGTGAGACACAGCGAACGCCACACCGATGACCATGGCAGACGATATACCTTCGTCGGCGCGCCCTGCGTACAAAAAGCGCAGCTCGTCGATTTCGGCCCCAGCCTGTGCTAGCTTGGAGACGATCATCAGCCCACCGTCGGAGGGCGATACGCCCGAGAGCGGCACGCCTGGCTACCGGCGAAGGAAGCCGGCGACGCGATCGCAAAGTGCACGCATCACGGGACCACGATCGGTTCGCCGTAAGCCACAGCCCCCACCGCCCACACTGCAGGACTCGCGGGGACACTGCACCAGTGAGCCCAGGCTGAATGATTCAGAAACACCACCGCCACAGAAACGACGTGGCTCGCAAAGGCGTCCAATGCACAATTCAGCAACACCAAGGAAATCGAACGCTTTTCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6593#1 TCGGCACGAGGGTTATAAGCGTAGGAAAACTGATAACNACACGGTCGGGGCTGCGCGAAA 60 consensus_6593#3 ------------------------------------------------------------ consensus_6593#0 ------------------------------------------------------------ consensus_6593#2 ------------------------------------------------------------ consensus_6593#1 AGGTAGCAGGAAACACACATACTCTCTCTCTCACACTGGTATATAGCCGGCAAAGGCTGT 120 consensus_6593#3 ------------------------------------------------------------ consensus_6593#0 ------------------------------------------------------------ consensus_6593#2 ------------------------------------------------------------ consensus_6593#1 GTGCTGCTTGCGAAATCAGTGCGACAACTGCATGCACAATAAATGGCACAATACACGGAA 180 consensus_6593#3 ------------------------------------------------------------ consensus_6593#0 ------------------------------------------------------------ consensus_6593#2 ------------------------------------------------------------ consensus_6593#1 GTGACCGGCGAAGGAGTTTAAGTAGCGCTGACGTAAACAATGCACGAAATATAGCGACCA 240 consensus_6593#3 ------------------------------------------------------------ consensus_6593#0 ------------------------------------------------------------ consensus_6593#2 ----------------------------------------------------CCGCGGAC 8 consensus_6593#1 AGGTGAGCAATCACATCAGGCACGGATGAGCCGGACCTACCACAGTTGGAAAGGGACAAG 300 consensus_6593#3 ------------------------------------------------------------ consensus_6593#0 --------------------------------------------------CAGCCNAGAA 10 consensus_6593#2 GCGTGGGCGCGCTCACTTCCAAAGTCGCGGGATTCGTCGTTCGCTGATTGTAGCCACGGC 68 consensus_6593#1 CAATAAGTACGGAAAGCAATTTGGAATTCATACACCAATAGCGTAGACAAGTAGTAGCGT 360 consensus_6593#3 -----ATCGCCGAGGGCA-TTTGGAAT-CATACACCAATAGCGTAGACAAGTAGTAGCGT 53 consensus_6593#0 ATTCGGCCCCGCANGGT-TANTGCATCGCTTAAGTGAAAAGTTTACA-AAGCAATACGGA 68 consensus_6593#2 -CTCGGCCATACAGTGTGTGTTGCATCGCTTAGGTGAAG---TTAAA-AAGCAATACTGA 123 * * ** * * ** ** ** * *** * ** * consensus_6593#1 AGGTAGCACGATAAGGAATAGCGCTTGATCGTGC-CAGTCAACCGCCCAGAGAAAG---G 416 consensus_6593#3 AG-TAGCACGATAAGGAATAGCGCTTGATCGTGC-CAGTCAACCGCCCAGAGAAAG---G 108 consensus_6593#0 AATTCG-ACACCAAAGATACGCAAAAAATTGGGCATCGTTACAAGCCCGTAGCTCGTTTA 127 consensus_6593#2 AATTCG-ACACCAAAGATACGCAAAAAAT-GGGCATCGTTACAAGCCCGTAGCTCGTTTA 181 * * * ** ** ** ** ** * ** ** * **** ** * consensus_6593#1 ATACATTCTTCT-GGTGCT-TGTT-CGATTCATCG-GCAGCTCAACGGGCGTCAGNCGGC 472 consensus_6593#3 ATACATTCTTCTTGGTGCT-TGTT-CGATTCATCG-GCAGCTCAACGGGCGTCAGC-GGC 164 consensus_6593#0 GTGCAGTGTGCTTCGTAGTGTGTTGCGAGTGAGAGTGTAGTTTAGC---CACCAGTTCGA 184 consensus_6593#2 GTGCAGTGTGTTTCGTAGTGTGTTGCGAGTGAGAGTGTAGTTTAGC---CACCAGTTCGA 238 * ** * * * ** * **** *** * * * * ** * * * * *** * consensus_6593#1 CCTCGAACATTCGAAAGCTTAGCGAACGCGTGAACACCGGTGCGTGTGAGACACAGGGGA 532 consensus_6593#3 CCTCGAACATTCGAAAGCTTAGCGAACGCGTGAACACCGGTGCGTGTGAGACACAGCG-A 223 consensus_6593#0 TTT---ACTTGTGCTAGTGT-GAGCATTGGAAAAGAGTTTCGTGTGAGA-TGTAAAGTGT 239 consensus_6593#2 TTT---ACTTGTGCTAGTGT-GAGCATTGGAAAAGAGTTTTTCATGTGAGTGTTAAGTGT 294 * ** * * ** * * * * * ** * ** ** * consensus_6593#1 ACGCCACACCGATGACCATGGCAGACGATATACCTTCGTCGGCGCGCCCTGGCGTACAAN 592 consensus_6593#3 ACGCCACACCGATGACCATGGCAGACGATATACCTTCGTCGGCGCGCCCTG-CGTACAAA 282 consensus_6593#0 GCGATAAGCGTAGGAAAACTGATAACAACACGGTCGGGGCTGCGCGAAAAGGTAGCAGGA 299 consensus_6593#2 GCGATAAGCGTAGGAAAACTGATAACAACACGGTCGTGGCTGCGCGAAAAGGTAGCTGGA 354 ** * * * ** * * ** * * * * ***** * consensus_6593#1 AAAGCGCAGCTCGTCGATTTCGGGCCCAAGACCTGT--GCTTAAGCTTGGAGGACGATCA 650 consensus_6593#3 AA-GCGCAGCTCGTCGATTTCGGCCCCAG--CCTGT--GCT--AGCTTGGAG-ACGATCA 334 consensus_6593#0 AACACACATACTCTCTCTCTCACACTGGTATATAGCCGGCAAAGGCTGTGTGTGT---TG 356 consensus_6593#2 AACACACATACTCTCTCTCTCAC--TGGTATATAGCCGGCAAAGGCTGTGTGTGTG-TTG 411 ** * ** ** * ** * ** *** * * consensus_6593#1 TCAGNCCACCGNTCGGGA------------------------------------------ 668 consensus_6593#3 TCAGCCCACCGTCGGAGGGCGATACGCCCGAGAGCGGCACGCCTGG---CTACCGGCGAA 391 consensus_6593#0 CGAAATCAGTGCGAAACTGCATGACAATAAATGGCACAATACACGGAAGTGACCGGCGAA 416 consensus_6593#2 CGAAATCAGTGCGAAACTGCAAGACAATAAATGGCACAATACACGGAAGTGACCGGCGAA 471 * ** * consensus_6593#1 ------------------------------------------------------------ consensus_6593#3 GGAAGCCG-GCGACGCGATCGCAAAGTGCACGCATCACGGGACCACGATCGGTTCGCCGT 450 consensus_6593#0 GGAGTTTAAGTAGCGCTGACGTAAACAATGCACGAAATATAGCGACCAA-GGTGAGCAAT 475 consensus_6593#2 GGAGTTTAAGTAGCGCTGACGTGAACAATGCACGAAATATAGCGACCAA-GGTTCGCCGT 530 consensus_6593#1 ------------------------------------------------------------ consensus_6593#3 AAGCCACAGCCCCCACCGCCCACAC-TGCAGGACTCGCG--GGGACACTGCACCAGT--- 504 consensus_6593#0 CACATCAGGCACGGATGAGCCGGACCTACCACAGTTGGAAAGGGACAAGCAATAAGTACG 535 consensus_6593#2 AAGCCACAGCCCCCACCGCCCACAC-TGCAGGACTCGCG--GGGACACTGCACCAGT--- 584 consensus_6593#1 ------------------------------------------------------------ consensus_6593#3 GAGCCCAGGCTGAA--TGATTCAGAAACACCACCGCCA--CAGAAACGACGTGGCTCGCA 560 consensus_6593#0 GAAAGCAATTTGGAATTCATACACCAATAGCGTAGACAAGTAGTAGCGTAGTAGCACGAT 595 consensus_6593#2 GAGCCCAGGCTGAA--TGATTCAGAAACACCACCGCCA--CAGAAACGACGTGGCTCGCA 640 consensus_6593#1 ------------------------------------------------------------ consensus_6593#3 AAGGCGTCCAATGCACAATTCAGCAACACCAAGGAAATCGAACGCTTTTCTGG------- 613 consensus_6593#0 AAGGAAT--AGCGCTTGATCGTGCCAGTCAACCGCCCAGAGAAAGGATACATTCTTCTGG 653 consensus_6593#2 AAGGCGTCCAATGC---------------------------------------------- 654 consensus_6593#1 ----------------------------------------------- consensus_6593#3 ----------------------------------------------- consensus_6593#0 TGCTTGTTCGATTCATCGGCAGCTCAACGGGCGTCAGCGGCCCTCGA 700 consensus_6593#2 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||