These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1352 fasta sequence [CCGCACAACCGAAACATTGCATCTACGTTCGATTCTGTTTGCACACCGATGTAGCCAGAATAATGCTAATCACAGTTTTCCCTTCCATTGTGCAAGCTACAGTAGTTAAAGCTAGTTAAGCGAACGTGCTGCTAACAATTGTTCGGCTCCAGATCACCCAAAAACACAGCAAATCAGTTTACGAGGAAGCCACGAGGACACACCGCATCGTTCAAAGCACTCAAAAGGGCGTGTGTAGCAAAACAAAAAGGCAATGAGCAATCGGCGGAAGAAAACCGATCGGCATGATCACGAAACGCTTCTCCCGCCTGTCGATGCCGACGAGGAAAAGCACGAAAAAAGTGACCTGCGGGGTGACTGGGGCAACATTGCCATCCTGTTCTTTCTCTACCTGCTGCAAGGCATTCCGATTGGACTGGCCTCGGCCATACCGATGTTGCTACAGAACCGTGGAGCAAGCTACAAACAGCAGGCTGAATTCAGTTTCGCTCACTGGCCGTTCAGCTTAAAGCTGCTGTGGGCCCCGATCGTAGATTCGCTGTTCTGGAAACGCTTCGGACGGCGAAAATCATGGCTCATTCCGACGCAGTACCTGATCGGCATATTTATGCTGATACTTTCGCTGCACGTGAACCGTTGGCTGGGCGCGGAAACCACCGACACTGGTGGCGATGATCATGCCACCGAGCAAACCAGCACACTCAACATTCCGCTACTGACGGTCATCTTTTTCATGCTAAACTTCCTCGCCGCCACGCAGGACATTGCCGTCGATGGGTGGGCTTTAACGATGCTGAAGCGCTGCAACGTTGGGCACGCATCGACCTGCAACAGCGTCGGCCAGACGGCGGGCTATTTCCTCGGGTACGTCGCCTTCATGGCACTGGAATCGGCCGAATTCTGCAACAGCTATCTACGTGCCGAACCCGCCCCGGAAGGGTTGGTCAATCTGTCCGGTTACCTGTGGTTCTGGGGGTTGGTGTTTTTGGTTACCACCACGCTGGTTGCGCTTGGCAAGCGGGAACTATCGCCCAGCCTCGATCGGGGCCACGAGGAGCACCTGGAGCTGGACATCAAGCAAACCTACCGCTTGCTGGTGGACATTATGAAGACGAAACCGATTCTGACGCTGGTAGCAATACAGCTGACAGCCCAAGGCAGGGTTTGCTGCCTGCGACGCGGTCACCTCGCTGAAACTGATCGACGCAGGCGTACCGAAGGATAAACTGGCCCTGCTGGTTGTACCGCTCGTTCCACTGCAGATTGTACTACCGTTGGCAATCAGCAAATACACCGCTGGAACGCGACCGATGGAAGTGTACCTGAAAGCGATCCCGTACCGGATAGGGCTC] [+] EMBL BM608644 [CCGCACAACCGAAACATTGCATCTACGTTCGATTCTGTTTGCACACCGATGTAGCCAGAATAATGCTAATCACAGTTTTCCCTTCCATTGTGCAAGCTACAGTAGTTAAAGCTAGTTAAGCGAACGTGCTGCTAACAATTGTTCGGCTCCAGATCACCCAAAAACACAGCAAATCAGTTTACGAGGAAGCCACGAGGACACACCGCATCGTTCAAAGCACTCAAAAGGGCGTGTGTAGCAAAACAAAAAGGCAATGAGCAATCGGCGGAAGAAAACCGATCGGCATGATCACGAAACGCTTCTCCCGCCTGTCGATGCCGACGAGGAAAAGCACGAAAAAAGTGACCTGCGGGGTGACTGGGGCAACATTGCCATCCTGTTCTTTCTCTACCTGCTGCAAGGCATTCCGATTGGACTGGCCTCGGCCATACCGATGTTGCTACAGAACCGTGGAGCAAGCTACAAACAGCAGGCTGAATTCAGTTTCGCTCACTGGCCGTTCAGCTTAAAGCTGCTGTGGGCCCCGATCGTAGATTCGCTGTTCTGGAAACGCTTCGGACGGCGAAAATCATGGCTCATTCCGACGC ] [+] EMBL BM637285 [ ccgTACAAACAGCAGGCTGAATTCAGTTTCGCTCACTGGCCGTTCAGCTTAAAGCTGCTGTGGGCCCCGATCGTAGATTCGCTGTTCTGGAAACGCTTCGGACGGCGAAAATCATGGCTCATTCCGACGCAGTACCTGATCGGCATATTTATGCTGATACTTTCGCTGCACGTGAACCGTTGGCTGGGCGCGGAAACCACCGACACTGGTGGCGATGATCATGCCACCGAGCAAACCAGCACACTCAACATTCCGCTACTGACGGTCATCTTTTTCATGCTAAACTTCCTCGCCGCCACGCAGGACATTGCCGTCGATGGGTGGGCTTTAACGATGCTGAAGCGCTGCAACGTTGGGCACGCATCGACCTGCAACAGCGTCGGCCAGACGGCGGGCTATTTCCTCGGGTACGTCGCCTTCATGGCACTGGAATCGGCCGAATTCTGCAACAGCTATCTACGTGCCGAACCCGCCCCGGAAGGGTTGGTCAATCTGTCCGGTTACCTGTGGTTCTGGGGGTTGGTGTTTTTGGTTACCACCACGCTGGTTGCGCTTGGCAAGCGGGAACTATCGCCCAGCCTCGATCGGGGCCACGAGGAGCACCTGGAGCTGGACATCAAGCAAACCTACCGCTTGCTGGTGGACATTATGAAGACGAAACCGATTCTGACGCTGGTAGCAATACAGCTGACAGCCCAAGGCAG ] [+] EMBL AGA285688 [ GATTCGCTGTTCTGGAAACGCTTCGGACGGCGAAAATCATGGCTCATTCCGACGCAGTACCTGATCGGCATATTTATGCTGATACTTTCGCTGCACGTGAACCGTTGGCTGGGCGCGGAAACCACCGACACTGGTGGCGATGATCATGCCACCGAGCAAACCAGCACACTCAACATTCCGCTACTGACGGTCATCTTTTTCATGCTAAACTTCCTCGCCGCCACGCAGGACATTGCCGTCGATGGGTGGGCTTTAACGATGCTGAAGCGCTGCAACGTTGGGCACGCATCGACCTGCAACAGCGTCGGCCAGACGGCGGGCTATTTCCTCGGGTACGTCGCCTTCATGGCACTGGGATCGGCCGAATTCTGCAACAGCTATCTACGTGCCGAACCCGC ] [-] EMBL AGA284382 [ GTGTTTTTGGTTACCCCCACGCTGGTTGCGCTTGGCAAGCGGGAACTATCGCCCAGCCTCGATCGGGGCCACGAGGAGCACCTGGAGCTGGACATCAAGCAAACCTACCGCTTGCTGGTGGACATTATGAAGATGAAACCGATTCTGACGCTGGTAGCAATACTGCTGACAG CCAAGGCAGGGTTTGCTGCCTGCGACGCGGTCACCTCGCTGAAACTGATCGACGCAGGCGTACCGAAGGATAAACTGGCCCTGCTGGTTGTACCGCTCGTTCCACTGCAGATTGTACTACCGTTGGCAATCAGCAAATACACCGCTGGAACGCGACCGATGGAAGTGTACCTGAAAGCGATCCCGTACCGGATAGGGCTC] consensusID : consensus_6594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGGTTTGCACACCGATGTAGCCAGAATAATGCTAATCACAGTTTTCCCTTCCATTGTGCAAGCTATAGTAGTTAAAGCTAGCTAAGCGAACGTGCTGCTAACAATTGTTCGGCACCAGATCACAGCAATCCAGTTTACGAGGAAGCCACGGGGACACACCGCATCGTTCAAAGCACTCAAAAGGGCGTGTGTAGCAGAGCCAAAAGGCAATGAGCAATCGGCGCAAGAAAACCGATCGGCATGATCACGAAACGCTTCTCCCGCCGGTCGATGCCGACGAGGAAAAGCACGAAAAAAGTGACCTGCGGGGTGACTGGGGCAACATTGCCATCCTGTTCTTTCTCTACCTGCTGCAAGGCATTCCGATTGGACTGGCCTCGGCCATACCGATGTTGCTACAGAACCGTGGAGCAAGCTACAAACAGCAGGCTGAATTCAGTTTCGCTCACTGGCCATTCAGCTTAAAGCTGCTGTGGGCCCCGATCGTAGATTCGCTGTTCTGGAAACGCTTCGGACGGCGAAAATCATGGCTCATTTCCGACGCAGTACCTGATCGGCATATTCATGCTGATACTTATCGCTGCACGTGAACCGTTGGGCTGGGGCGCGGAGACCACCGACACCGGTGGCGACAACCATGCCACCGAGCAAACCAGCACACTCAACATTCCG] [+] EMBL BM605613 [CCGGTTTGCACACCGATGTAGCCAGAATAATGCTAATCACAGTTTTCCCTTCCATTGTGCAAGCTATAGTAGTTAAAGCTAGCTAAGCGAACGTGCTGCTAACAATTGTTCGGCACCAGATCACAGCAATCCAGTTTACGAGGAAGCCACGGGGACACACCGCATCGTTCAAAGCACTCAAAAGGGCGTGTGTAGCAGAGCCAAAAGGCAATGAGCAATCGGCGCAAGAAAACCGATCGGCATGATCACGAAACGCTTCTCCCGCCGGTCGATGCCGACGAGGAAAAGCACGAAAAAAGTGACCTGCGGGGTGACTGGGGCAACATTGCCATCCTGTTCTTTCTCTACCTGCTGCAAGGCATTCCGATTGGACTGGCCTCGGCCATACCGATGTTGCTACAGAACCGTGGAGCAAGCTACAAACAGCAGGCTGAATTCAGTTTCGCTCACTGGCCATTCAGCTTAAAGCTGCTGTGGGCCCCGATCGTAGATTCGCTGTTCTGGAAACGCTTCGGACGGCGAAAATCATGGCTCATTTCCGACGCAGTACCTGATCGGCATATTCATGCTGATACTTATCGCTGCACGTGAACCGTTGGGCTGGGGCGCGGAGACCACCGACACCGGTGGCGACAACCATGCCACCGAGCAAACCAGCACACTCAACATTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6594#0 CCGCACAACCGAAACATTGCATCTACGTTCGATTCTGTTTGCACACCGATGTAGCCAGAA 60 consensus_6594#1 ---------------------------------CCGGTTTGCACACCGATGTAGCCAGAA 27 * ************************ consensus_6594#0 TAATGCTAATCACAGTTTTCCCTTCCATTGTGCAAGCTACAGTAGTTAAAGCTAGTTAAG 120 consensus_6594#1 TAATGCTAATCACAGTTTTCCCTTCCATTGTGCAAGCTATAGTAGTTAAAGCTAGCTAAG 87 *************************************** *************** **** consensus_6594#0 CGAACGTGCTGCTAACAATTGTTCGGCTCCAGATCACCCAAAAACACAGCAAATCAGTTT 180 consensus_6594#1 CGAACGTGCTGCTAACAATTGTTCGGCACCAGATCAC----------AGCAATCCAGTTT 137 *************************** ********* ***** ****** consensus_6594#0 ACGAGGAAGCCACGAGGACACACCGCATCGTTCAAAGCACTCAAAAGGGCGTGTGTAGCA 240 consensus_6594#1 ACGAGGAAGCCACGGGGACACACCGCATCGTTCAAAGCACTCAAAAGGGCGTGTGTAGCA 197 ************** ********************************************* consensus_6594#0 AAACAAAAAGGCAATGAGCAATCGGCGGAAGAAAACCGATCGGCATGATCACGAAACGCT 300 consensus_6594#1 GAGCCAAAAGGCAATGAGCAATCGGCGCAAGAAAACCGATCGGCATGATCACGAAACGCT 257 * * ********************** ******************************** consensus_6594#0 TCTCCCGCCTGTCGATGCCGACGAGGAAAAGCACGAAAAAAGTGACCTGCGGGGTGACTG 360 consensus_6594#1 TCTCCCGCCGGTCGATGCCGACGAGGAAAAGCACGAAAAAAGTGACCTGCGGGGTGACTG 317 ********* ************************************************** consensus_6594#0 GGGCAACATTGCCATCCTGTTCTTTCTCTACCTGCTGCAAGGCATTCCGATTGGACTGGC 420 consensus_6594#1 GGGCAACATTGCCATCCTGTTCTTTCTCTACCTGCTGCAAGGCATTCCGATTGGACTGGC 377 ************************************************************ consensus_6594#0 CTCGGCCATACCGATGTTGCTACAGAACCGTGGAGCAAGCTACAAACAGCAGGCTGAATT 480 consensus_6594#1 CTCGGCCATACCGATGTTGCTACAGAACCGTGGAGCAAGCTACAAACAGCAGGCTGAATT 437 ************************************************************ consensus_6594#0 CAGTTTCGCTCACTGGCCGTTCAGCTTAAAGCTGCTGTGGGCCCCGATCGTAGATTCGCT 540 consensus_6594#1 CAGTTTCGCTCACTGGCCATTCAGCTTAAAGCTGCTGTGGGCCCCGATCGTAGATTCGCT 497 ****************** ***************************************** consensus_6594#0 GTTCTGGAAACGCTTCGGACGGCGAAAATCATGGCTCATT-CCGACGCAGTACCTGATCG 599 consensus_6594#1 GTTCTGGAAACGCTTCGGACGGCGAAAATCATGGCTCATTTCCGACGCAGTACCTGATCG 557 **************************************** ******************* consensus_6594#0 GCATATTTATGCTGATACTT-TCGCTGCACGTGAACCGTTGGCT--GGGCGCGGAAACCA 656 consensus_6594#1 GCATATTCATGCTGATACTTATCGCTGCACGTGAACCGTTGGGCTGGGGCGCGGAGACCA 617 ******* ************ ********************* ********* **** consensus_6594#0 CCGACACTGGTGGCGATGATCATGCCACCGAGCAAACCAGCACACTCAACATTCCGCTAC 716 consensus_6594#1 CCGACACCGGTGGCGACAACCATGCCACCGAGCAAACCAGCACACTCAACATTCCG---- 673 ******* ******** * ************************************ consensus_6594#0 TGACGGTCATCTTTTTCATGCTAAACTTCCTCGCCGCCACGCAGGACATTGCCGTCGATG 776 consensus_6594#1 ------------------------------------------------------------ consensus_6594#0 GGTGGGCTTTAACGATGCTGAAGCGCTGCAACGTTGGGCACGCATCGACCTGCAACAGCG 836 consensus_6594#1 ------------------------------------------------------------ consensus_6594#0 TCGGCCAGACGGCGGGCTATTTCCTCGGGTACGTCGCCTTCATGGCACTGGAATCGGCCG 896 consensus_6594#1 ------------------------------------------------------------ consensus_6594#0 AATTCTGCAACAGCTATCTACGTGCCGAACCCGCCCCGGAAGGGTTGGTCAATCTGTCCG 956 consensus_6594#1 ------------------------------------------------------------ consensus_6594#0 GTTACCTGTGGTTCTGGGGGTTGGTGTTTTTGGTTACCACCACGCTGGTTGCGCTTGGCA 1016 consensus_6594#1 ------------------------------------------------------------ consensus_6594#0 AGCGGGAACTATCGCCCAGCCTCGATCGGGGCCACGAGGAGCACCTGGAGCTGGACATCA 1076 consensus_6594#1 ------------------------------------------------------------ consensus_6594#0 AGCAAACCTACCGCTTGCTGGTGGACATTATGAAGACGAAACCGATTCTGACGCTGGTAG 1136 consensus_6594#1 ------------------------------------------------------------ consensus_6594#0 CAATACAGCTGACAGCCCAAGGCAGGGTTTGCTGCCTGCGACGCGGTCACCTCGCTGAAA 1196 consensus_6594#1 ------------------------------------------------------------ consensus_6594#0 CTGATCGACGCAGGCGTACCGAAGGATAAACTGGCCCTGCTGGTTGTACCGCTCGTTCCA 1256 consensus_6594#1 ------------------------------------------------------------ consensus_6594#0 CTGCAGATTGTACTACCGTTGGCAATCAGCAAATACACCGCTGGAACGCGACCGATGGAA 1316 consensus_6594#1 ------------------------------------------------------------ consensus_6594#0 GTGTACCTGAAAGCGATCCCGTACCGGATAGGGCTC 1352 consensus_6594#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||