These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1245 fasta sequence [CTTGCCGACCCTGCCCTGTTGATCAATTGTCTTGCTTTGCGTCTCGCTTTTGTGAGGTGTACGTACGCACGTGCGTGCGCGTTTGTGTACTTTTACACCATTCAATCAATATTTTAATGTTTTCCACTTTTCACATTCACACCTTCTTGTCGTTGACTTTGTTTGAATGTTTCTCCCGCTCACTCTCTCTTTCACGCTCTCTCTCTATCACGCATTTCGTACCTTTTTTAAAAAAAGTTTATCAGGTAAGTTGACAAAAATACACTAAACAATAACAAGGAAATGAACAAAAGAAAGCTCAAGGGAAACGTAAAGGCAGGAAAAACTAAACACAACAGAAAGATATAGGAAAATGAAAGGAAGCAAAAAAACAAAATTAAAACAAACAAAACGTATATAGCAACAAAAATTATGTACGAATAAATTTCACCTTATCACAAGTGTGCTTTTCTTGTATATCACAGAAGAAGGAAACTAGGTTGCAGTAAACGCACGCGCGCGCACACGGACCCACACCCCCTCGCATTAGCAATTAAACGCGCAAGACCGGATTAGCAGTAAGATCAATTGATCAACAGAGCCAGCACGTGCATACAGTACGCGTGGTGCGTGAAAGGATATTGGAAAATCGCTGTGTGGCTTTAAAATCGGTTATCGGTCCTGAAGATGGCTCTGCTTTCGACAGCGCAATAAGAGCTGCTTTTCGGTCGTGTGACACAGCAGTGTACCAGGTAATGATCCCCAGACCGGCAGGCAGAGATGATCATGGAATCGATTCTACATTATGCCGGTGCGGGTGAGTGGGGGGACATGAATGGTGATTTCGATGATAGTATGATAAGAAAAGGGGATTTTTATGTTCGATCTCTTTTCTTTACGTGTGTTGCGTGTGTATGTGGGGCGAGACATTTCTCGATTCACGCGCTTTACGATTTCGATTGCGATCGATCATTCCTACTTCACTTTTTCTCGCTCTTTTTGCAATTTGTGTGCATATAGCTAATCTTTTTCCATCCATTAACTGTGGGTTCCAGGGGGGCTGTGGTTTGTTTTTCCCTTCAGTGTTATTTTTTTTAAGTAAACGTTTGCCTAAATTTATAATGCGTGATGCCGTGTAAGTAAAACGTATGCCAAAAACATATCCTAAACAAAACAATAAGTACGTGTACGTAAAATCCGGTCCATCGTGTTTCAGCCCGACGCTGTTTTACGCACGTTTTTCTTTTTCTTTTTTTTTTGGGGGGG] [+] EMBL BX611765 [CTTGCCGACCCTGCCCTGTTGATCAATTGTCTTGCTTTGCGTCTCGCTTTTGTGAGGTGTACGTACGCACGTGCGTGCGCGTTTGTGTACTTTTACACCATTCAATCAATATTTTAATGTTTTCCACTTTTCACATTCACACCTTCTTGTCGTTGACTTTGTTTGAATGTTTCTCCCGCTCACTCTCTCTTTCACGCTCTCTCTCTATCACGCATTTCGTACCTTTTTTAAAAAAAGTTTATCAGGTAAGTTGACAAAAATACACTAAACAATAACAAGGAAATGAACAAAAGAAAGCTCAAGGGAAACGTAAAGGCAGGAAAAACTAAACACAACAGAAAGATATAGGAAAATGAAAGGAAGCAAAAAAACAAAATTAAAACAAACAAAACGTATATAGCAACAAAAATTATGTACGAATAAATTTCACCTTATCACAAGTGTGCTTTTCTTGTATATCACAGAAGAAGGAAACTAGGTTGCAGTAAACGCACGCGCGCGCACACGGACCCACACCCCCTCGCATTAGCAATTAAACGCGCAAGACCGGATTAGCAGTAAGATCAATTGATCAACAGAGCCAGCACGTGCATACAGTACGCGTGGTGCGTGAAAGGATATTGGAAAATCGCTGTGTGGCTTTAAAATCGGTTATCGGTCCTGAAGATGGCTCTGCTTTCGACAGCGCAATAAGAGCTGCTTTTCGGTCGTGTGACA ] [-] EMBL BX623429 [ CTCAAGGGAAACGTAAAGGCAGGAAAAACTAAACACAACAGAAAGATATAGGAAAATGAAAGGAAGCAAAAAAACAAAATTAAAACAAACAAAACGTATATAGCAACAAAAATTATGTACGAATAAATTTCACCTTATCACAAGTGTGCTTTTCTTGTATATCACAGAAGAAGGAAACTAGGTTGCAGTAAACGCACGCGCGCGCACACGGACCCACACCCCCTCGCATTAGCAATTAAACGCGCAAGACCGGATTAGCAGTAAGATCAATTGATCAACAGAGCCAGCACGTGCATACAGTACGCGTGGTGCGTGAAAGGATATTGGAAAATCGCTGTGTGGCTTT AAATCGGTTATCGGTCCTGAAGATGGCTCTGCTTTCGACAGCGCAATAGGAGCTGC TTTCGGTCGTGTGACACAGCAGTGTACCAGGTAATGATCCCCAGACCGGCAGGCAGAGATGATCATGGAATCGATTCTACATTATGCCGGTGCGGGTGAGTGGGGGGACATGAATGGTGATTTCGATGATAGTATGATAAGAAAAGGGGATTTTTATGTTCGATCTCTTTTCTTTACGTGTGTTGCGTGTGTATGTGGGGCGAGACATTTCTCGATTCAC ] [-] EMBL BX611766 [ GGTAATGATCCCCAGACCGGCAGGCAGAGATGATCATGGAATCGATTCTACATTATGC GTGCGGGTGAGTGGGGGGACATGAATGGTGATTTCGATGATAGTATGATAAGAAAAGGGGATTTTTATGTTCGATCTCTTTTCTTTACGTGTGTTGCGTGTGTATGTGGGGCGAGACATTTCTCGATTCACGCGCTTTACGATTTCGATTGCGATCGATCATTCCTACTTCACTTTTTCTCGCTCTTTTTGCAATTTGTGTGCATATAGCTAATCTTTTTCCATCCATTAACTGTGGGTTCCAGGGGGGCTGTGGTTTGTTTTTCCCTTCAGTGTTATTTTTTTTAAGTAAACGTTTGCCTAAATTTATAATGCGTGATGCCGTGTAAGTAAAACGTATGCCAAAAACATATCCTAAACAAAACAATAAGTACGTGTACGTAAAATCCGGTCCATCGTGTTTCAGCCCGACGCTGTTTTACGCACGTTTTTCTTTTTCTTTTTTTTTTGGGGGGG] consensusID : consensus_6599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1234 fasta sequence [GAGATGATCATGGAATCTCGATTCTACAATATGCGTGTGGGTGAGTGGGGAGACATGAATGGTGATTTCGATGATAGTATGATAAGAAAAGGGGATTTTTATGTTCGATCTCTTTTCTTTACGTGTGCTGCGTGTGTATGTGGGGCGAGACATTTCTCGATTCACGCGCTTTACGATTTCGATTGCGATCGATCATTCCTACTTCACTTTCTCTCGCTCTCTCTCTCTCTCTCTCTTTTTGCAATTTGTGTGCATATAGCTAATCTTTTTCCATCCATTAACTGTGGGTTCCCGGGGGGGCTGTGGTTTGTTTTTCCCTTCAGTGTTATTTTTTTTAAGTAAACGTTTGCCTAAATTTATAATGCGTGATGCCGTGTAAGTAAAACGTATGCCAAAAACATATCCTAAACAAAACAATAAGTACGTGTACGTAAAATCCGGTCCATCGTGTTTCAGCCCGACGCTGTTTTACGCACGTTTTTCTTTTTCTTTTTTTTTTGGGAGAGAGGGAAATATTTTTAAGAAATTAAACGTTTGCAAAATTATAGTACTTCGTTTCGACCATTTCGATTGCCCTTTTTCTAATGCACGCAATATAAATCCTATCCTTCTTTTTACACCAGTTTGCCCATTCGTGCGTGTGTGTGTGTGTGTGTGGTTCCGGTACGAGTTATCGTGCCTTTTTGTTTCAAACGTTTCATTTGTTCCTCTGTTCCTGTTCTTCAACGTTTGTTTTGAAAGCAGTTAAAGGGGGGGATAGGACACACTTTCCTACCCCAGTGCCACGCCAGAGCCCTCAGCTGTCAGTTGTCGGCGGAAATGGGTTTGATGTTTGATGTTGGTGTCGCCCACGGCCATTGATTAATTGGTTTGTCACTTGAACGCTGCCAACTGGCCAATTCGTGCGGAAGCGGACACTCCGCCGAAAGAATGTAATGGCTATATGCACTCTTCGTAGATGCATTTCTTCTTTTTTTGCACCGTTCCTGTGCGACAGTGCCGGTGGCAGCTCGTTGGCCAACAGCCAACCGCTAGACCGCTGATTGGTGCCAACGAAAAACCACAGGCACAAGCGACCGAAACTCAATTTCAATGCTTGTTAGTTAAACTAAAAAAAGACATCCTCGGACAGAGGTGGGGGAGGGGGGAGAGGTGGGGGGCTTCGATGCTGCTGCTTCATTCATCAATCTCATCTTCATTGACTGTGCGGCAAAGAGTGATCGAGCTGACTGTT] [-] EMBL BM601376 [GAGATGATCATGGAATCTCGATTCTACAATATGCGTGTGGGTGAGTGGGGAGACATGAATGGTGATTTCGATGATAGTATGATAAGAAAAGGGGATTTTTATGTTCGATCTCTTTTCTTTACGTGTGCTGCGTGTGTATGTGGGGCGAGACATTTCTCGATTCACGCGCTTTACGATTTCGATTGCGATCGATCATTCCTACTTCACTTTCTCTCGCTCTCTCTCTCTCTCTCTCTTTTTGCAATTTGTGTGCATATAGCTAATCTTTTTCCATCCATTAACTGTGGGTTCCCGGGGGGGCTGTGGTTTGTTTTTCCCTTCAGTGTTATTTTTTTTAAGTAAACGTTTGCCTAAATTTATAATGCGTGATGCCGTGTAAGTAAAACGTATGCCAAAAACATATCCTAAACAAAACAATAAGTACGTGTACGTAAAATCCGGTCCATCGTGTTTCAGCCCGACGCTGTTTTACGCACGTTTTTCTTTTTCTTTTTTTTTTGGGAGAGAGGGAAATATTTTTAAGAAATTAAACGTTTGCAAAATTATAGTACTTCGTTTCGACCATTTCGATTGCCCTTTTTCTAATGCACGCAATATAAATCCTATCCTTCTTTTTACACCAGTTTGCCCATTCGTGCGTGTGTGTGTGTGTGTGTGGTTCCGG ] [-] EMBL BX610171 [ CAATATAAATCCTATCCTTCCTTTTACACCAGTTTGCCCATTCGTGCGTGTGTGTGTGTGTGTGTGGTTCGTGTACGAGTTATCGTGCCTTTTTGTTTCAAACGTTTCATTTGTTCCTCTGTTCCTGTTCTTCAACGTTTGTTTTGAAAGCAGTTAAAGGGGGGGATAGGACACACTTTCCTACCCCAGTGCCACGCCAGAGCCCTCAGCTGTCAGTTGTCGGCGGAAATGGGTTTGATGTTTGATGTTGGTGTCGCCCACGGCCATTGATTAATTGGTTTGTCACTTGAACGCTGCCAACTGGCCAATTCGTGCGGAAGCGGACACTCCGCCGAAAGAATGTAATGGCTATATGCACTCTTCGTAGATGCATTTCTTCTTTTTTTGCACCGTTCCTGTGCGACAGTGCCGGTGGCAGCTCGTTGGCCAACAGCCAACCGCTAGACCGCTGATTGGTGCCAACGAAAAACCACAGGCACAAGCGACCGAAACTCAATTTCAATGCTTGTTAGTTAAACTAAAAAAAGACATCCTCGGACAGAGGTGGGGGAGGGGGGAGAGGTGGGGGGCTTCGATGCTGCTGCTTCATTCATCAATCTCATCTTCATTGACTGTGCGGCAAAGAGTGATCGAGCTGACTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6599#0 -------------CTTGCCGACCCTGCCCTGT-----TGATCAATTGTCTTGCTTTGCGT 42 consensus_6599#1 GAGATGATCATGGAATCTCGATTCTACAATATGCGTGTGGGTGAGTGGGGAGACATGAAT 60 * *** ** * * * ** * ** * ** * consensus_6599#0 CTCGCTTTTGTGAGGTGTACG-TACGCACGTGCG---TGCGCGTTTGTGTACTTTTACAC 98 consensus_6599#1 GGTGATTTCGATGATAGTATGATAAGAAAAGGGGATTTTTATGTTCG-ATCTCTTTTCTT 119 * *** * *** * ** * * * * * *** * * *** * consensus_6599#0 CATTCAATCAATATTTTAATGTTTTCC---ACTTTTCAC-ATTCACAC-CTTCTTGTCGT 153 consensus_6599#1 TACGTGTGCTGCGTGTGTATGTGGGGCGAGACATTTCTCGATTCACGCGCTTTACGATTT 179 * * * * **** * ** **** * ****** * *** * * consensus_6599#0 TGACTTTGTTTGAATGTTTCTCCCGCTCACTCTCTCTTTCACGCTCTCTCTCTATCACGC 213 consensus_6599#1 CGATTGCGATCGATCATTCCTACT--TCACTTTCTC--TCGCTCTCTCTCTCTCTCTCTC 235 ** * * * ** ** ** * ***** **** ** * ********** ** * * consensus_6599#0 ATTTCGTACCTTTTTTAAAAAAAGTTTATCAGGTAAGTTGACAAAAATACACTAAACAAT 273 consensus_6599#1 TTTTTGCAATTTGTGTGCATATAGCTAATCTTTT--TCCATCCATTAACTGTGGGTTCCC 293 *** * * ** * * * * ** * *** * * * * consensus_6599#0 AACAAGGAAATGAACAAAAGAAAGCTCAAGGGAAACGTAAAGGCAGGAAAAA-----CTA 328 consensus_6599#1 GGGGGGGCTGTGGTTTGTTTTTCCCTTCAGTGTTATTTTTTTTAAGTAAACGTTTGCCTA 353 ** ** ** ** * * * ** *** *** consensus_6599#0 AACACAACA-GAAAGATATAG-GAAAATGAAAGGAAGCAAAAAAACAAAATTAAAACAAA 386 consensus_6599#1 AATTTATAATGCGTGATGCCGTGTAAGTAAAACGTATGCCAAAAACATATCCTAAACAAA 413 ** * * * *** * * ** * *** * * ******* * ******* consensus_6599#0 -CAAAACGTATATAGCAACAAAA--------ATTATGTACGAATA-AATTTCACCTTAT- 435 consensus_6599#1 ACAATAAGTACGTGTACGTAAAATCCGGTCCATCGTGTTTCAGCCCGACGCTGTTTTACG 473 *** * *** * **** ** *** * * *** consensus_6599#0 CACAAGTGTGCTTTTCTTGTATATCACAGAAGAAGGAAACTAGGTTGCAGTAAACGCACG 495 consensus_6599#1 CACGTTTTTCTTTTTCTTTTTTTTTTGGGAGAGAGGGAAATATTTTTAAGAAATTAAACG 533 *** * * ******* * * * ** *** ** ** ** ** ** *** consensus_6599#0 CGCGCGCACACGGACCCACACCCCCTCGCATTAGCAATTAAACGCGCAAGACCGGATTAG 555 consensus_6599#1 TTTGCAAAATTATAGTACTTCGTTTCGACCATTTCGATTGCCCTTTTTCTAATGCACGCA 593 ** * * * * * * *** * * * * consensus_6599#0 CAGTAAGATCAATTGATCAACAGA-GCCAGCACGTGCATACA-GTACGCGTG-GTGCGTG 612 consensus_6599#1 ATATAAATCCTATCCTTCTTTTTACACCAGTTTGCCCATTCGTGCGTGTGTGTGTGTGTG 653 *** * ** ** * **** * *** * * * *** *** *** consensus_6599#0 AAAGGATATTGGA-AAATCGCTGTGTGGCTTTAAAATCGGT-TATCGGTCCTGAAGATGG 670 consensus_6599#1 TGTGGTTCCGGTACGAGTTATCGTGCCTTTTTGTTTCAAACGTTTCATTTGTTCCTCTGT 713 ** * * * * * *** *** * ** * * ** consensus_6599#0 CTCTGCT-TTCGACAGC-GCAATAAGAGCTGCTTTTCGGTCGTGT--GACACAGCAGTGT 726 consensus_6599#1 TCCTGTTCTTCAACGTTTGTTTTGAAAGCAGTTAAAGGGGGGGATAGGACACACTTTCCT 773 *** * *** ** * * * *** * * ** * * ****** * consensus_6599#0 ACCAGGTAATGATCCCCAGACCGGCAGGCAGAGATGATCA-TGGAATCGATTCTACATTA 785 consensus_6599#1 ACCCCAGTGCCACGCCAGAGCCCTCAGCTGTCAGTTGTCGGCGGAAATGGGTTTGATGTT 833 *** * ** ** *** * ** **** * * * * consensus_6599#0 TGCCGGTGCGGGTGAGTGGGGGGACATGAATGGTGATTTCGATGATAGTATGATAAGAAA 845 consensus_6599#1 TGATGTTGGTGTCGCCCACGGCCAT-TGATTAATTGGTTTGTCACTTGAACGCTGCCAAC 892 ** * ** * * ** * *** * * ** * * * * * * ** consensus_6599#0 AGGG-GATTTTTATGTT--CGATCTCTTTTCTTTACGTGTGTTGCGTGTGTATGTGGGGC 902 consensus_6599#1 TGGCCAATTCGTGCGGAAGCGGACACTCCGCCGAAAGAATGTAATGGCTATATG------ 946 ** *** * * ** * ** * * * *** * * **** consensus_6599#0 GAGACATTTCTCGATTCACGCGCTTTACGATTTCGATTGCGATCGATCAT-TCCTACTTC 961 consensus_6599#1 ----CACTCTTCG---TAGATGCATTTCTTCTTTTTTTGC-ACCGTTCCTGTGCGACAGT 998 ** * *** * ** ** * ** **** * ** ** * * * ** consensus_6599#0 ACTTTTTCTCGCTCTTT---TTGCAATTTGTGTGCATATAGCTAATCTTTTTCCATCCAT 1018 consensus_6599#1 GCCGGTGGCAGCTCGTTGGCCAACAGCCAACCGCTAGACCGCTGAT-TGGTGCCAACGAA 1057 * * **** ** ** * * *** ** * * *** * * consensus_6599#0 TAACTGTGGGTTCCAGGGGGGCTGTGGTTTGTTTTTCCCTTCAGTGTTATTTTTTTTAAG 1078 consensus_6599#1 AAACCACAGGCACAAGCGA--CCGAAACTCAATTT--CAATGCTTGTTAGTTAAACTAAA 1113 *** ** * ** * * * * *** * * ***** ** *** consensus_6599#0 TAAACGTTTGCCTAAATTTATAATGCGTGATGCCGTGTAAGTAAAACGTATGCCAAAAAC 1138 consensus_6599#1 AAAAGACATCCTCGGACAGA-GGTGGGGGAGGGGGGAGAGGTGGGGGGCTT---CGATGC 1169 *** * * * * ** * ** * * * ** * * * * consensus_6599#0 ATATCCTAAACAAAACAATAAGTACGTGTACGTAAAATCCGGTCCATCGTGTTTCAGCCC 1198 consensus_6599#1 TGCTGCTTCATTCATCAATCT-CATCTTCATTGACTGTGCGGCAAAGAGTGATCGAGCTG 1228 * ** * * **** * * * * * *** * *** * *** consensus_6599#0 GACGCTGTTTTACGCACGTTTTTCTTTTTCTTTTTTTTTTGGGGGGG 1245 consensus_6599#1 ACTGTT----------------------------------------- 1234 * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||