cluster # 66

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 66 cluster # 66 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_66#0 length = 390 sequences # 1

consensus_66#1 length = 229 sequences # 1

consensusID : consensus_66#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [CCGCCCACGCGTCCGCGCTCTCGGACATCATGGCTAAGCGCAACATGAAGCCCGAAGTCCGCAAGGCCCAGCGCGAGCAGGCAATCAAGGCTGCCAAGGAAGCCAAGAAGGCTAAGCAGACCGACAAGAAGCCGAAAGCTGCCCAGCCCAACCCGAAGCAGCAGAAAACGAAGGCCGCTAAGGTCGCCCAGAAGGCTGCACCGCGCGTAGGAGGCAAGCGATAAGAAGCGTGAACCACTTTTACATTCATACTTGTTTCTTACCTTAAGCCGCCAATGTGTATGGTGTTTTCGTGTCGGTTATAAGCTGGTACCATCTGGGCTTTGTCGGGCCGAAAATGTAATATTGGAGAGTATAAAATAAGAAAACAACCACACTACCAGTGGATGT]

[+] EMBL BM621848             [CCGCCCACGCGTCCGCGCTCTCGGACATCATGGCTAAGCGCAACATGAAGCCCGAAGTCCGCAAGGCCCAGCGCGAGCAGGCAATCAAGGCTGCCAAGGAAGCCAAGAAGGCTAAGCAGACCGACAAGAAGCCGAAAGCTGCCCAGCCCAACCCGAAGCAGCAGAAAACGAAGGCCGCTAAGGTCGCCCAGAAGGCTGCACCGCGCGTAGGAGGCAAGCGATAAGAAGCGTGAACCACTTTTACATTCATACTTGTTTCTTACCTTAAGCCGCCAATGTGTATGGTGTTTTCGTGTCGGTTATAAGCTGGTACCATCTGGGCTTTGTCGGGCCGAAAATGTAATATTGGAGAGTATAAAATAAGAAAACAACCACACTACCAGTGGATGT]




>consensus_66#0
CCGCCCACGCGTCCGCGCTCTCGGACATCATGGCTAAGCGCAACATGAAGCCCGAAGTCC
GCAAGGCCCAGCGCGAGCAGGCAATCAAGGCTGCCAAGGAAGCCAAGAAGGCTAAGCAGA
CCGACAAGAAGCCGAAAGCTGCCCAGCCCAACCCGAAGCAGCAGAAAACGAAGGCCGCTA
AGGTCGCCCAGAAGGCTGCACCGCGCGTAGGAGGCAAGCGATAAGAAGCGTGAACCACTT
TTACATTCATACTTGTTTCTTACCTTAAGCCGCCAATGTGTATGGTGTTTTCGTGTCGGT
TATAAGCTGGTACCATCTGGGCTTTGTCGGGCCGAAAATGTAATATTGGAGAGTATAAAA
TAAGAAAACAACCACACTACCAGTGGATGT

consensusID : consensus_66#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence

                              [CCGCCCACGCGTCCGATTGTGCCCAATGTTGGTGCCGTAACTGACTAATCCCACTTCCCAAACATACTGAATGTATCTGTCTGTCACTGTAGCATTATTAACCATAACACTAAATGCTTTGTCAATGGTGAGAGTGATGCATGATCGTTACTAACCTTACAACCAGATTTGAACCGCACGAAGACGCTAATTAAAATTATCAAAAATATAATAATTGTTCACAAGCATG]

[+] EMBL BM588903             [CCGCCCACGCGTCCGATTGTGCCCAATGTTGGTGCCGTAACTGACTAATCCCACTTCCCAAACATACTGAATGTATCTGTCTGTCACTGTAGCATTATTAACCATAACACTAAATGCTTTGTCAATGGTGAGAGTGATGCATGATCGTTACTAACCTTACAACCAGATTTGAACCGCACGAAGACGCTAATTAAAATTATCAAAAATATAATAATTGTTCACAAGCATG]




>consensus_66#1
CCGCCCACGCGTCCGATTGTGCCCAATGTTGGTGCCGTAACTGACTAATCCCACTTCCCA
AACATACTGAATGTATCTGTCTGTCACTGTAGCATTATTAACCATAACACTAAATGCTTT
GTCAATGGTGAGAGTGATGCATGATCGTTACTAACCTTACAACCAGATTTGAACCGCACG
AAGACGCTAATTAAAATTATCAAAAATATAATAATTGTTCACAAGCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_66#0      CCGCCCACGCGTCCGCGCTCTCGGACATCATGGCTAAGCGCAACATGAAGCCCGAAGTCC 60
consensus_66#1      ------------------------------------------------------------
                                                                                

consensus_66#0      GCAAGGCCCAGCGCGAGCAGGCAATCAAGGCTGCCAAGGAAGCCAAGAAGGCTAAGCAGA 120
consensus_66#1      ------------------------------------------------------------
                                                                                

consensus_66#0      CCGACAAGAAGCCGAAAGCTGCCCAGCCCAACCCGAAGCAGCAGAAAACGAAGGCCGCTA 180
consensus_66#1      ----------------------------CCGCCC-ACGCGTCCGATTGTGCCCAATGTTG 31
                                                *  *** * **  * **    *      * * 

consensus_66#0      AGGTCGCCCAGAAGGCTGCACCGCGCGTAGGAGGCAAGCGATAAGAAGC-GTGAACCACT 239
consensus_66#1      GTGCCG--TAACTGACTA-ATCCCACTTCCCAAACATACTGAATGTATCTGTCTGTCACT 88
                      * **   *   * **  * * * * *   *  **  *   * * * * **    ****

consensus_66#0      TTTACATTCATACTTGTTTCTTACCTTAAGCCGCCAATGTGTATGGTGTTTTCGTGTCGG 299
consensus_66#1      GTAGCATTATTAACCATAACACTAAATGCTTTGTCAATGGTGAGAGTGATG-CATGATCG 147
                     *  ****  **    *  *      *     * *****   *  *** *  * **   *

consensus_66#0      TTATAAGCTGGTACCATCTGGGCTTTGTCGGGCCGAAAATGTAATATTGGAGAGTATAAA 359
consensus_66#1      TTACTAACC--TTACAACCAGATTTGAACCGCACGAAGACGC--TAATTAAAATTATCAA 203
                    ***  * *   *  ** *  *  **   * *  **** * *   ** *  * * *** **

consensus_66#0      ATAAGAAAACAACCACACTACCAGTGGATGT 390
consensus_66#1      A-AATATAATAATTGTTC-ACAAGCATG--- 229
                    * ** * ** **     * ** **