These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1382 fasta sequence [GGTGGCAGCAGGGAAAGCATTGTCGCACCGCCCGTACCGCTGCTGGTGCCGCAAGCGGTGGCGGTGCCGGAAAAGCACCACGACTTTGGTGTGCTCGAACCGAGCAAAACGATGAAAGTGTTCCCGCATGACGGTGGCGTCGAGGTGAATGCTGTTGTGAGTGGAATCGTACTGGACGATGGCAATCATCCGCTGCCCGATGCGAAAGTGTACGTAACCGATGCGCATAGCCAGCAGGTGCTGGCCAACGGGCGCACGGGACCGTTGGGCAAGTTCCAGTTTGAGTCACTGTCCGGCACGAAGGACATTGTGGTGCACGCGGAACCGCACGGGTATGAGGCAGGCGAAAAAACCATTCGCCAAGGTCCGCTGGGCGGTGCGACCGGCATCGTGTTCCATCTGACGCGCGACGAGCGCGTGCTCGGCCTGCCGCGGCTCGTATTCGTCATACTGGCTGGGTGCGTCTCGGTCGGCATCATCGTTGCCGGCATCATGTGCTTCATGTACATTCAGGCGCGCCGGCGCGACTCGCGCTACTACTACAACTTCTCGCTGCTGCCGCAGAAGGGCGAACCGAACCGCAAGCTGTTCGACGACGACGAAGAAACGGAACTGTTCCGTGCGTCCACGAAAAAGCTGCAGCCATACTACGATGACGAACAGGATCCGATCACCGACACGGATGACGACAGCGAGGAGGAAATCGTGATGCTAAATCCCTCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGGCGCTGCTAAGACTTTTGCGCGCTGTGTGCAACACGCAGCACCGCGCAAAGCCGGTCAATTATCTCCGCGTACCTTTTGAAGCTGCTTTCTACCGAGAAGCGCGGCCCCCGCCCATTCGTTCTGAACGATCGTTCGTAGTAGATGGGCCATTTTAATGACCAACACCCATTACCCCGGGCGACACACCCTCCCCACGGTGGACAACTTGCCTTTCCGCTGCTGTTGAAATCATCGGTATCCAGTAACTAGTAATGTAACTATGACAACGAACACACAAATCGGCGCCACCAACCACAACCCCGGCCCAACTTACTTGCATGACAATGGTTGGCTTCTTCTAACAACTTTCATGTGTGATAACCGTCCGATAAGTACAGCCCTCGCGTCCAGAGAGACGGCAAAAATGCACAGAATCGTCCCAGTCCCAGAGTACTGCATTTGGTTGGTGTTGTTCCCTGGCACAAATTACCTTAAGAGGGGACAGAGAGCAGCCTGACCACTCTACTGACAGGCAACATTCGAGCATCATGCTGTGAAGAAAACAAGAAACAGAAGGAAGAAGCAGTAGACAACGTGTAATTTAAGAATACATTCCCCAGCGTACAGAGAACCGGCAGGGT] [+] EMBL AGA280956 [GGTGGCAGCAGGGAAAGCATTGTCGCACCGCCCGTACCGCTGCTGGTGCCGCAAGCGGTGGCGGTGCCGGAAAAGCACCACGACTTTGGTGTGCTCGAACCGAGCAAAACGATGAAAGTGTTCCCGCATG ] [+] EMBL BX601815 [ GCCGCAAGCGGTGGCGGTGCCGGAAAAGCACCACGACTTTGGTGTGCTCGAACCGAGCAAAACGATGAAAGTGTTCCCGCAGGACGGTGGCGTCGAGGTGAATGCTGTTGTGAGTGGAATCGTACTGGACGATGGCAATCATCCGCTGCCCGATGCGAAAGTGTACGTAACCGATGCGCATAGCCAGCAGGTGCTGGCCAACGGGCGCACGGGACCGTTGGGCAAGTTCCAGTTTGAGTCACTGTCCGGCACGAAGGACATTGTGGTGCACGCGGAACCGCACGGGTATGAGGCAGGCGAAAAAACCATTCGCCAAGGTCCGCTGGGCGGTGCGACCGGCATCGTGTTCCATCTGACGCGCGACGAGCGCGTGCTCGGCCTGCCGCGGCTCGTATTCGTCATACTGGCTGGGTGCGTCTCGGTCGGCATCATCGTTGCCGGCATCATGTGCTTCATGTACATTCAGGCGCGCCGGCGCGACTCGCGCTACTACTACAACTTCTCGCTGCTGCCGCAGAAGGGCGAACCGAACCGCAAGCTGTTCGACGACGACGAAGAAACGGAACTGTTCCGTGCGTCCACGAAAAAGCTGCAGCCATACTACGATGACGAACAGGATCCGATCACCGACACGGATGACGACAGCGAGGAGGAAATCGTGATGCTAAATCCCTCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGG ] [+] EMBL BX622659 [ GGATCCGATCACCGACACGGATGACGACAGCGAGGAGGAAATCGTGATGCTAAATCCCTCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGGCGCTGCTAAGACTTTTGCGCGCTGTGTGCAACACGCAGCACCGCGCAAAGCCGGTCAATTATCTCCGCGTACCTTTTGAAGCTGCTTTCTACCGAGAAGCGCGGCCCCCGCCCATTCGTTCTGAACGATCGTTCGTAGTAGATGGGCCATTTTAATGACCAACACCCATTACCCCGGGCGACACACCCTCCCCACGGTGGACAACTTGCCTTTCCGCTGCTGTTGAAATCATCGGTATCCAGTAACTAGTAATGTAACTATGACAACGAACACACAAATCGGCGCCACCAACCACAACCCCGGCCCAACTTACTTGCATGACAATGGTTGGCTTCTTCTAACAACTTTCATGTGTGATAACCGTCCGATAAGTACAGCCCTCGCGTCCAGAGAGACGGCAAAAATGCACAGAATCGTCCCAGTCCCAGAGTACTGCATTTGGTTGGTGTTGTTCCCTGGCACAAATTACCTTAAGAGGGGACAGAGAGCAGCCTGACCACTCTACTGACAGGCAACATTCGAGCATCATGCTGTGAAGAAAACAAGAAACAGAAGGAAGAAGCAGTAGACAACGTGTAATTTAAGAATACATTCCCCAGC ] [-] EMBL AGA282587 [ GCGCCACCAACCACAACCCCGGCCCAACTTACTTGCATGACAATGGTTGGCTTCTTCTAACAACTTTCATGTGTGATAACCGTCCGATAAGTACAGCCCTCGCGTCCAGAGAGACGGCAAAAATGCACAGAATCGTCCCAGTCCCAGAGTACTGCATTTGGTTGGTGTTGTTCCCTGGCACAAATTACCTTAAGAGGGGACAGAGAGCAGCCTGACCACTCTACTGACAGGCAACATTCGAGCATCATGCTGTGAAGAAAACAAGAAACAGAAGGAAGAAGCAGTAGACAACGTGTAA TTAAGAATACATTCCCCAGCGTACAGAGAACCGGCAGGGT] consensusID : consensus_6601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [GAGCAGAATCGGCACGTGGCAGCGAGGAGGAAATCGTGATGCTAAATCCCTCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGGCGCTGCTAAGACTTTTGCGCGCTGTGTGCAACACGCAGCACCGCGCAAAGCCGGTCAATTATCTCCGCGTACCTTTTGAAGCTGCTTTCTACCGAGAAGCGCGGCCCCCGCCCATTCGTTCTGAACGATCGTTCGTAGTAGATGGGCCATTTTAATGACCAACACCCATTACCCCGGGCGACACACCCTCCCCACGGTGGACAACTTGCCTTTCCGCTGCTGTTGAAATCATCGGTATCCAGTAACTAGTAATGTAACTATGACAAGCGAACACACAAAATCGGGCCACCGAACCAGCAAGACCCGGGGCCAACGTTACTTGCATGTACCAATTGGGTTTGGCANTTCNTTCTAACAACGTTTCATGTGTGATAACCGGTCCGGAATAGTTACAGGCCTTCGACGGTCCAGAAGAGACGGCAACAAATGCAGCAGAATCGTTCCACAAGTCCCAGAGTACTGGATTAGGGTNGGGTGTTGGTACCGTGGGCACAAATTACGCCTTAAGGAAGGGGACAGAGAG] [+] EMBL BX468845 [GAGCAGAATCGGCACGTGGCAGCGAGGAGGAAATCGTGATGCTAAATCCCTCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGGCGCTGCTAAGACTTTTGCGCGCTGTGTGCAACACGCAGCACCGCGCAAAGCCGGTCAATTATCTCCGCGTACCTTTTGAAGCTGCTTTCTACCGAGAAGCGCGGCCCCCGCCCATTCGTTCTGAACGATCGTTCGTAGTAGATGGGCCATTTTAATGACCAACACCCATTACCCCGGGCGACACACCCTCCCCACGGTGGACAACTTGCCTTTCCGCTGCTGTTGAAATCATCGGTATCCAGTAACTAGTAATGTAACTATGACAAGCGAACACACAAAATCGGGCCACCGAACCAGCAAGACCCGGGGCCAACGTTACTTGCATGTACCAATTGGGTTTGGCANTTCNTTCTAACAACGTTTCATGTGTGATAACCGGTCCGGAATAGTTACAGGCCTTCGACGGTCCAGAAGAGACGGCAACAAATGCAGCAGAATCGTTCCACAAGTCCCAGAGTACTGGATTAGGGTNGGGTGTTGGTACCGTGGGCACAAATTACGCCTTAAGGAAGGGGACAGAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6601#0 GGTGGCAGCAGGGAAAGCATTGTCGCACCGCCCGTACCGCTGCTGGTGCCGCAAGCGGTG 60 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 GCGGTGCCGGAAAAGCACCACGACTTTGGTGTGCTCGAACCGAGCAAAACGATGAAAGTG 120 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 TTCCCGCATGACGGTGGCGTCGAGGTGAATGCTGTTGTGAGTGGAATCGTACTGGACGAT 180 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 GGCAATCATCCGCTGCCCGATGCGAAAGTGTACGTAACCGATGCGCATAGCCAGCAGGTG 240 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 CTGGCCAACGGGCGCACGGGACCGTTGGGCAAGTTCCAGTTTGAGTCACTGTCCGGCACG 300 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 AAGGACATTGTGGTGCACGCGGAACCGCACGGGTATGAGGCAGGCGAAAAAACCATTCGC 360 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 CAAGGTCCGCTGGGCGGTGCGACCGGCATCGTGTTCCATCTGACGCGCGACGAGCGCGTG 420 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 CTCGGCCTGCCGCGGCTCGTATTCGTCATACTGGCTGGGTGCGTCTCGGTCGGCATCATC 480 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 GTTGCCGGCATCATGTGCTTCATGTACATTCAGGCGCGCCGGCGCGACTCGCGCTACTAC 540 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 TACAACTTCTCGCTGCTGCCGCAGAAGGGCGAACCGAACCGCAAGCTGTTCGACGACGAC 600 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 GAAGAAACGGAACTGTTCCGTGCGTCCACGAAAAAGCTGCAGCCATACTACGATGACGAA 660 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 CAGGATCCGATCACCGACACGGATGACGACAGCGAGGAGGAAATCGTGATGCTAAATCCC 720 consensus_6601#1 ---GAGCAGA--ATCGGCACG-----TGGCAGCGAGGAGGAAATCGTGATGCTAAATCCC 50 ** * ** * ** **** * ******************************* consensus_6601#0 TCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGGCGCTGCTAAGACTTTTGC 780 consensus_6601#1 TCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGGCGCTGCTAAGACTTTTGC 110 ************************************************************ consensus_6601#0 GCGCTGTGTGCAACACGCAGCACCGCGCAAAGCCGGTCAATTATCTCCGCGTACCTTTTG 840 consensus_6601#1 GCGCTGTGTGCAACACGCAGCACCGCGCAAAGCCGGTCAATTATCTCCGCGTACCTTTTG 170 ************************************************************ consensus_6601#0 AAGCTGCTTTCTACCGAGAAGCGCGGCCCCCGCCCATTCGTTCTGAACGATCGTTCGTAG 900 consensus_6601#1 AAGCTGCTTTCTACCGAGAAGCGCGGCCCCCGCCCATTCGTTCTGAACGATCGTTCGTAG 230 ************************************************************ consensus_6601#0 TAGATGGGCCATTTTAATGACCAACACCCATTACCCCGGGCGACACACCCTCCCCACGGT 960 consensus_6601#1 TAGATGGGCCATTTTAATGACCAACACCCATTACCCCGGGCGACACACCCTCCCCACGGT 290 ************************************************************ consensus_6601#0 GGACAACTTGCCTTTCCGCTGCTGTTGAAATCATCGGTATCCAGTAACTAGTAATGTAAC 1020 consensus_6601#1 GGACAACTTGCCTTTCCGCTGCTGTTGAAATCATCGGTATCCAGTAACTAGTAATGTAAC 350 ************************************************************ consensus_6601#0 TATGACAA-CGAACACACAAATCGGCGCCACCAACC----ACAACCCCGGCCCAAC-TTA 1074 consensus_6601#1 TATGACAAGCGAACACACAAAATCGGGCCACCGAACCAGCAAGACCCGGGGCCAACGTTA 410 ******** ************ * ****** * * * **** ** ***** *** consensus_6601#0 CTTGCATGA--CAATGG---TTGGC---TTCTTCTAACAAC-TTTCATGTGTGATAACCG 1125 consensus_6601#1 CTTGCATGTACCAATTGGGTTTGGCANTTCNTTCTAACAACGTTTCATGTGTGATAACCG 470 ******** **** * ***** * ********** ****************** consensus_6601#0 -TCCG--ATAAGTACAG-CCCTCGC--GTCCAGA-GAGACGGCAA-AAATGCA-CAGAAT 1176 consensus_6601#1 GTCCGGAATAGTTACAGGCCTTCGACGGTCCAGAAGAGACGGCAACAAATGCAGCAGAAT 530 **** *** ***** ** *** ******* ********** ******* ****** consensus_6601#0 CGTCCCA---GTCCCAGAGTACTGCATTTGGTTGG--TGTTGTTCCCT--GGCACAAATT 1229 consensus_6601#1 CGTTCCACAAGTCCCAGAGTACTGGATTAGGGTNGGGTGTTGGTACCGTGGGCACAAATT 590 *** *** ************** *** ** * * ***** * ** ********** consensus_6601#0 AC--CTTAAG--AGGGGACAGAGAGCAGCCTGACCACTCTACTGACAGGCAACATTCGAG 1285 consensus_6601#1 ACGCCTTAAGGAAGGGGACAGAGAG----------------------------------- 615 ** ****** ************* consensus_6601#0 CATCATGCTGTGAAGAAAACAAGAAACAGAAGGAAGAAGCAGTAGACAACGTGTAATTTA 1345 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 AGAATACATTCCCCAGCGTACAGAGAACCGGCAGGGT 1382 consensus_6601#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||