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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6602#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence
[GATNGCCGAGGNTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATGGAAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGGAGTCTGTTGCACTGTTCAATTCAGTGGATTTTATGAATTTTACCCACTTTTTGACATTTTTCGTAACAAGTAAAGAGTATCCCAATCGATGTGTGATGAACGTGGTATAAGGAATACACCAGGAAGCGTCACTAGCTTTGAAGCACTTGGCTGAAGAGTAGCTTCACCTTTAGCGGCTGGTGCTCACCTGGTACTAGCGCTGCTCTGGCTCTTCTCTACGCCCCTCTTCGCACTACGCAGCCAACTTACTTTGTACTCTACACACACACACACACGCGGCACCACCCTGCTNCCTGCGCACTCACACCTCTAACCCACACCTACGCCCACCGGCCTCACNCTCCACCCCAGCACACACGCGGGCACGCACTCCTNTCTACTTCACCNCCACGCACGCCTTTTTTACCCTCTCCGCTACCCTCTCACCTCNTCACCCCTCCGCNCCACGCCCCCCCTCCCCTCCCCCCCCCCCNGCCCCTCGCCCCGCCCNCCCCNCGCCCTCCCCCCCCTCCCCGCCCTCACTNCTCCCACTCCTCCGGCCCTTGTCTTACTCGTGTCT]
[+] EMBL AL931849 [GATNGCCGAGGNTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATGGAAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGGAGTCTGTTGCACTGTTCAATTCAGTGGATTTTATGAATTTTACCCACTTTTTGACATTTTTCGTAACAAGTAAAGAGTATCCCAATCGATGTGTGATGAACGTGGTATAAGGAATACACCAGGAAGCGTCACTAGCTTTGAAGCACTTGGCTGAAGAGTAGCTTCACCTTTAGCGGCTGGTGCTCACCTGGTACTAGCGCTGCTCTGGCTCTTCTCTACGCCCCTCTTCGCACTACGCAGCCAACTTACTTTGTACTCTACACACACACACACACGCGGCACCACCCTGCTNCCTGCGCACTCACACCTCTAACCCACACCTACGCCCACCGGCCTCACNCTCCACCCCAGCACACACGCGGGCACGCACTCCTNTCTACTTCACCNCCACGCACGCCTTTTTTACCCTCTCCGCTACCCTCTCACCTCNTCACCCCTCCGCNCCACGCCCCCCCTCCCCTCCCCCCCCCCCNGCCCCTCGCCCCGCCCNCCCCNCGCCCTCCCCCCCCTCCCCGCCCTCACTNCTCCCACTCCTCCGGCCCTTGTCTTACTCGTGTCT]
consensusID : consensus_6602#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[ATGGGGCTGATCGAGTGAGCTGTTTGGCAGCATAATTGGAAAGGGGTTTTTTCATCATTGTGGATTTGCGTTATGAATGCAATGAACCAGAAATGCAATAGAAATCGTTCTATGTCGGTTCGGTTCGGCGAAAACGCAGAGTTAGGGGCGTTAGTATGCCTATGCCAAACTGTGGCAGACGTTGCTCTGTACGTTCTGCTTCAAACGCGTCAGTATAGTCTCAAACGTCAACTCAAAACGTTTGCAAAACCCGATTAAAATTGCACTGGATGCGCCTTTCCTATTCGAAACAGCTGAACAACATACAGTGACGGCACGCTGATGTCGGACACCAAATTTTTCGTACGCATTACCCCAGACATGTGCTAGCTTTGGAGCTTCCTGGACGGTTACTTAAACTTCGTATCGGAATACCTCCTTCGATAAGGTTAGTGTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATTGGAAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGG]
[+] EMBL BX626411 [ATGGGGCTGATCGAGTGAGCTGTTTGGCAGCATAATTGGAAAGGGGTTTTTTCATCATTGTGGATTTGCGTTATGAATGCAATGAACCAGAAATGCAATAGAAATCGTTCTATGTCGGTTCGGTTCGGCGAAAACGCAGAGTTAGGGGCGTTAGTATGCCTATGCCAAACTGTGGCAGACGTTGCTCTGTACGTTCTGCTTCAAACGCGTCAGTATAGTCTCAAACGTCAACTCAAAACGTTTGCAAAACCCGATTAAAATTGCACTGGATGCGCCTTTCCTATTCGAAACAGCTGAACAACATACAGTGACGGCACGCTGATGTCGGACACCAAATTTTTCGTACGCATTACCCCAGACATGTGCTAGCTTTGGAGCTTCCTGGACGGTTACTTAAACTTCGTATCGGAATACCTCCTTCGATAAGGTTAGTGTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATTGGAAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGG]
consensusID : consensus_6602#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[CAGATCGGCACGAGGGGAGCTTCTGGACGGTTACTTAAACTTCGTATCGGAATACCTCCTTCGATAAGGTTAGTGTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATTGGAAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGGAGTCTGTTGCACTGTTCAATTCAGTGGATTTTATGAATTTTACCCACTTTTTGACATTTTTCGTAAAAGTAAAGAGTATCCCAATCGATGTGTGATGAACGTGGTATAAGGAATACACCAGGAAGCGTCATAGTTTGAAGATTGGTGAAGAGTAGCTTCACTTTAGGGGTGGTGTCACCTGTATAGGTGCTTGGTTTTTAGCCTTTCGATAGAGCAACTTACTTTGTATTAAACAAAAAGGCACACTGTATGGATCCAATCTCAACAATAGCACGGTAATCAAAAGGAAAGGGCAGATCTTTATAAAGCAGAGTTTTTTAATTCGGTAATTAATTTTAATTGA]
[+] EMBL BX467849 [CAGATCGGCACGAGGGGAGCTTCTGGACGGTTACTTAAACTTCGTATCGGAATACCTCCTTCGATAAGGTTAGTGTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATTGGAAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGGAGTCTGTTGCACTGTTCAATTCAGTGGATTTTATGAATTTTACCCACTTTTTGACATTTTTCGTAAAAGTAAAGAGTATCCCAATCGATGTGTGATGAACGTGGTATAAGGAATACACCAGGAAGCGTCATAGTTTGAAGATTGGTGAAGAGTAGCTTCACTTTAGGGGTGGTGTCACCTGTATAGGTGCTTGGTTTTTAGCCTTTCGATAGAGCAACTTACTTTGTATTAAACAAAAAGGCACACTGTATGGATCCAATCTCAACAATAGCACGGTAATCAAAAGGAAAGGGCAGATCTTTATAAAGCAGAGTTTTTTAATTCGGTAATTAATTTTAATTGA]
consensusID : consensus_6602#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[AAATCGCACGAGGTTGTNCACTAATGAGTAATAACTATAATTCATTAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGGAGTCTGTTGCACTGTTCAATTCAGTGGATTTTATGAATTTTACCCAACTTTTTGACATTTTCGTAAAAGTAAAGAGTATCCCAATCGATGTGTGATGAACGTGGTATAAGGAATACACCAGGAAGCGTCATAGTTTGAAGATTGGTGAAGAGTAGCTTCACTTTAGGGGTGGTGTCACCTGTATAGCGTGCTTGGTTTTGCGAGCCTTTCGATAGAGCAACNTTACTTTGTATTAAGACAAAAAGGCACACTGTATGGATCCAATCTCAAGCAANTAGCAGCGGTAATCACAAGAGAAAGGGCAGATCTTTATAAAAGGCAGAGTTTCAAGTTCGTAATTGAGTGTTGAACTNGACAG]
[+] EMBL BX469225 [AAATCGCACGAGGTTGTNCACTAATGAGTAATAACTATAATTCATTAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGGAGTCTGTTGCACTGTTCAATTCAGTGGATTTTATGAATTTTACCCAACTTTTTGACATTTTCGTAAAAGTAAAGAGTATCCCAATCGATGTGTGATGAACGTGGTATAAGGAATACACCAGGAAGCGTCATAGTTTGAAGATTGGTGAAGAGTAGCTTCACTTTAGGGGTGGTGTCACCTGTATAGCGTGCTTGGTTTTGCGAGCCTTTCGATAGAGCAACNTTACTTTGTATTAAGACAAAAAGGCACACTGTATGGATCCAATCTCAAGCAANTAGCAGCGGTAATCACAAGAGAAAGGGCAGATCTTTATAAAAGGCAGAGTTTCAAGTTCGTAATTGAGTGTTGAACTNGACAG]
consensusID : consensus_6602#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence
[CCCAGGCTTACGTGGCGCGCACGATGGGGCTGATCGAGTGAGCTGTTTGGCAGCATAATTGGAAAGGGGTTTTTTCATCATTGTGGATTTGCGTTATGAATGCAATGAACCAGAAATGCAATAGAAATCGTTCTATGTCGGTTCGGTTCGGCGAAAACGCAGAGTTACGTTGCTCTGTACGTTTTGCTTCAAACGCGTCAGTATAGTCTCAAACGTCAACTCAAAGCGTTTGCAAAACCCGATTAAAATTGCACTGGATGCGCCTTTCCTATTCGAAACAGTGAACAACATACAGTGACGGGACCCTGAAGTCGGACACCAAATTTTTCGTACGCATTACCTCAGATATGTGCTAGCT]
[+] EMBL AL697620 [CCCAGGCTTACGTGGCGCGCACGATGGGGCTGATCGAGTGAGCTGTTTGGCAGCATAATTGGAAAGGGGTTTTTTCATCATTGTGGATTTGCGTTATGAATGCAATGAACCAGAAATGCAATAGAAATCGTTCTATGTCGGTTCGGTTCGGCGAAAACGCAGAGTTACGTTGCTCTGTACGTTTTGCTTCAAACGCGTCAGTATAGTCTCAAACGTCAACTCAAAGCGTTTGCAAAACCCGATTAAAATTGCACTGGATGCGCCTTTCCTATTCGAAACAGTGAACAACATACAGTGACGGGACCCTGAAGTCGGACACCAAATTTTTCGTACGCATTACCTCAGATATGTGCTAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6602#2 CAGATCGGCACGAGGGGAGCTTCTGGACGGTTACTTAAACTTCGTATCGGAATACCTCCT 60
consensus_6602#3 ------------------------------------------------------------
consensus_6602#0 ------------------------------------------------------------
consensus_6602#1 ------------------------------------------------------------
consensus_6602#4 ------------------------------------------------------------
consensus_6602#2 TCGATAAGGTTAGTGTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATTGG 120
consensus_6602#3 ------------------------------------------------------------
consensus_6602#0 ---GATNGCCGAGGNTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTAT-GG 56
consensus_6602#1 ------------------------------------------------------------
consensus_6602#4 ------------------------------------------------------------
consensus_6602#2 AAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTT 180
consensus_6602#3 ----------------------------------------------AAATCGCACGAGGT 14
consensus_6602#0 AAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTT 116
consensus_6602#1 ------------------------------------------------ATGGGGCTGATC 12
consensus_6602#4 -------------------------CCCAGGCTTACGTGGCGCGCACGATGGGGCTGATC 35
* *
consensus_6602#2 ACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTG 240
consensus_6602#3 TGTN-CACTAATGAGTAATAACTATAATTCATTAATATCAGCATCATACTGGCCAATCTG 73
consensus_6602#0 ACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTG 176
consensus_6602#1 GAGTGAGCTGTTTGGCAG----CATAATTGGAAAGGGGTTTTTTCATCATTGTGGATTTG 68
consensus_6602#4 GAGTGAGCTGTTTGGCAG----CATAATTGGAAAGGGGTTTTTTCATCATTGTGGATTTG 91
** * * * ****** * **** * * ** **
consensus_6602#2 GACAAGTATTTGGCAGTATTTTGCCAATGTA-TGGAGTCTGTTGCA---CTGTTCAATTC 296
consensus_6602#3 GACAAGTATTTGGCAGTATTTTGCCAATGTA-TGGAGTCTGTTGCA---CTGTTCAATTC 129
consensus_6602#0 GACAAGTATTTGGCAGTATTTTGCCAATGTA-TGGAGTCTGTTGCA---CTGTTCAATTC 232
consensus_6602#1 CGTTATGAAT--GCAATGAACCAGAAATGCAATAGAAATCGTTCTATGTCGGTTCGGTTC 126
consensus_6602#4 CGTTATGAAT--GCAATGAACCAGAAATGCAATAGAAATCGTTCTATGTCGGTTCGGTTC 149
* * * *** * **** * * ** *** * * **** ***
consensus_6602#2 AGTGGATTTTATGAATTTTACCCA-CTTTTTGACATTTTTCGTAA-AAGTAAAGAGTATC 354
consensus_6602#3 AGTGGATTTTATGAATTTTACCCAACTTTTTGACATTTT-CGTAA-AAGTAAAGAGTATC 187
consensus_6602#0 AGTGGATTTTATGAATTTTACCCA-CTTTTTGACATTTTTCGTAACAAGTAAAGAGTATC 291
consensus_6602#1 GGCGAAAACGCAGAGTTAGGGGCGTTAGTATGCCTATGCCAAACTGTGGCAGACGTTGCT 186
consensus_6602#4 GGCGAAAACGCAGAGTTA-----------------------------------CGTTGCT 174
* * * ** ** *
consensus_6602#2 CCAATCGATGTGTGATGAACGTG---GTATAA----GGAATACACCAGGAAGCGTCA-TA 406
consensus_6602#3 CCAATCGATGTGTGATGAACGTG---GTATAA----GGAATACACCAGGAAGCGTCA-TA 239
consensus_6602#0 CCAATCGATGTGTGATGAACGTG---GTATAA----GGAATACACCAGGAAGCGTCACTA 344
consensus_6602#1 CTGTACGTTCTGCTTCAAACGCGTCAGTATAGTCTCAAACGTCAACTCAAAACGTTTGCA 246
consensus_6602#4 CTGTACGTTTTGCTTCAAACGCGTCAGTATAGTCTCAAACGTCAACTCAAAGCGTTTGCA 234
* ** * ** **** * ***** * ** * ** *** *
consensus_6602#2 G-TTTGAA--GA--TTGG-TGAAGAGTAGCTTCAC-TTTAGGGG-TGGTG-TCACCTG-T 456
consensus_6602#3 G-TTTGAA--GA--TTGG-TGAAGAGTAGCTTCAC-TTTAGGGG-TGGTG-TCACCTG-T 289
consensus_6602#0 GCTTTGAA--GCACTTGGCTGAAGAGTAGCTTCACCTTTAGCGGCTGGTGCTCACCTGGT 402
consensus_6602#1 AAACCCGATTAAAATTGCACTGGATGCGCCTTTCCTATTCGAAACAGCTGAACAACATAC 306
consensus_6602#4 AAACCCGATTAAAATTGCACTGGATGCGCCTTTCCTATTCGAAACAG-TGAACAACATAC 293
* *** * *** * ** * * ** ** *
consensus_6602#2 A-TAG-G-TGCT-TG--GTTTTT-----AGCCTTTCG-------ATAGAGCAACTT-ACT 497
consensus_6602#3 A-TAGCG-TGCT-TG--GTTTTGC---GAGCCTTTCG-------ATAGAGCAACNTTACT 334
consensus_6602#0 ACTAGCGCTGCTCTG--GCTCTTCTCTACGCCCCTCTTCGCACTACGCAGCCAACTTACT 460
consensus_6602#1 AGTGACGGCACGCTGATGTCGGACACCAAATTTTTCGT------ACGCATTACCCCAGAC 360
consensus_6602#4 AGTGACGGGACCCTGAAGTCGGACACCAAATTTTTCGT------ACGCATTACCTCAGAT 347
* * * * ** * ** * *
consensus_6602#2 TTGTATTA---A-ACAAAAAGGCACACTGTATGGATCCAATCTCAAC--AATAGCA-CGG 550
consensus_6602#3 TTGTATTA---AGACAAAAAGGCACACTGTATGGATCCAATCTCAAGCAANTAGCAGCGG 391
consensus_6602#0 TTGTACTCTACACACACACACACACGCGGCACCACCCTGCTNCCTGCGCACTCACACCTC 520
consensus_6602#1 ATGTGCTAGCTTTGGAGCTTCCTGGACGGTTACTTAAACTTCGTATCGGAATACCTCCTT 420
consensus_6602#4 ATGTGCTAGCT------------------------------------------------- 358
*** *
consensus_6602#2 TAATCA-AAAGGAAA------GGGCAGATCTTTATAAAGCAGAGTTTTTTAATTCGGTAA 603
consensus_6602#3 TAATCACAAGAGAAA------GGGCAGATCTTTATAAAAGGCAGAGTTTCAAGTTCGTAA 445
consensus_6602#0 TAACCCACACCTACGCCCACCGGCCTCACNCTCCACCCCAGCACACACGCGGGCACGCAC 580
consensus_6602#1 CGATAAGGTTAGTGTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATTGGA 480
consensus_6602#4 ------------------------------------------------------------
consensus_6602#2 TTAATTTT--AATTGA-------------------------------------------- 617
consensus_6602#3 TTGAGTGTTGAACTNGACAG---------------------------------------- 465
consensus_6602#0 TCCTNTCT--ACTTCACCNCCACGCACGCCTTTTTTACCCTCTCCGCTACCCTCTCACCT 638
consensus_6602#1 AGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTA 540
consensus_6602#4 ------------------------------------------------------------
consensus_6602#2 ------------------------------------------------------------
consensus_6602#3 ------------------------------------------------------------
consensus_6602#0 CNTCACCCCTCCGCNCCACGCCCCCCCTCCCCTCCCCCCCCCCCNGCCCCTCGCCCCGCC 698
consensus_6602#1 CTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGG 600
consensus_6602#4 ------------------------------------------------------------
consensus_6602#2 ------------------------------------------------------------
consensus_6602#3 ------------------------------------------------------------
consensus_6602#0 CNCCCCNCGCCCTCCCCCCCCTCCCCGCCCTCACTNCTCCCACTCCTCCGGCCCTTGTCT 758
consensus_6602#1 ACAAGTATTTGGCAGTATTTTGCCAATGTATGG--------------------------- 633
consensus_6602#4 ------------------------------------------------------------
consensus_6602#2 -----------
consensus_6602#3 -----------
consensus_6602#0 TACTCGTGTCT 769
consensus_6602#1 -----------
consensus_6602#4 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||