These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6602#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence [GATNGCCGAGGNTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATGGAAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGGAGTCTGTTGCACTGTTCAATTCAGTGGATTTTATGAATTTTACCCACTTTTTGACATTTTTCGTAACAAGTAAAGAGTATCCCAATCGATGTGTGATGAACGTGGTATAAGGAATACACCAGGAAGCGTCACTAGCTTTGAAGCACTTGGCTGAAGAGTAGCTTCACCTTTAGCGGCTGGTGCTCACCTGGTACTAGCGCTGCTCTGGCTCTTCTCTACGCCCCTCTTCGCACTACGCAGCCAACTTACTTTGTACTCTACACACACACACACACGCGGCACCACCCTGCTNCCTGCGCACTCACACCTCTAACCCACACCTACGCCCACCGGCCTCACNCTCCACCCCAGCACACACGCGGGCACGCACTCCTNTCTACTTCACCNCCACGCACGCCTTTTTTACCCTCTCCGCTACCCTCTCACCTCNTCACCCCTCCGCNCCACGCCCCCCCTCCCCTCCCCCCCCCCCNGCCCCTCGCCCCGCCCNCCCCNCGCCCTCCCCCCCCTCCCCGCCCTCACTNCTCCCACTCCTCCGGCCCTTGTCTTACTCGTGTCT] [+] EMBL AL931849 [GATNGCCGAGGNTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATGGAAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGGAGTCTGTTGCACTGTTCAATTCAGTGGATTTTATGAATTTTACCCACTTTTTGACATTTTTCGTAACAAGTAAAGAGTATCCCAATCGATGTGTGATGAACGTGGTATAAGGAATACACCAGGAAGCGTCACTAGCTTTGAAGCACTTGGCTGAAGAGTAGCTTCACCTTTAGCGGCTGGTGCTCACCTGGTACTAGCGCTGCTCTGGCTCTTCTCTACGCCCCTCTTCGCACTACGCAGCCAACTTACTTTGTACTCTACACACACACACACACGCGGCACCACCCTGCTNCCTGCGCACTCACACCTCTAACCCACACCTACGCCCACCGGCCTCACNCTCCACCCCAGCACACACGCGGGCACGCACTCCTNTCTACTTCACCNCCACGCACGCCTTTTTTACCCTCTCCGCTACCCTCTCACCTCNTCACCCCTCCGCNCCACGCCCCCCCTCCCCTCCCCCCCCCCCNGCCCCTCGCCCCGCCCNCCCCNCGCCCTCCCCCCCCTCCCCGCCCTCACTNCTCCCACTCCTCCGGCCCTTGTCTTACTCGTGTCT] consensusID : consensus_6602#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [ATGGGGCTGATCGAGTGAGCTGTTTGGCAGCATAATTGGAAAGGGGTTTTTTCATCATTGTGGATTTGCGTTATGAATGCAATGAACCAGAAATGCAATAGAAATCGTTCTATGTCGGTTCGGTTCGGCGAAAACGCAGAGTTAGGGGCGTTAGTATGCCTATGCCAAACTGTGGCAGACGTTGCTCTGTACGTTCTGCTTCAAACGCGTCAGTATAGTCTCAAACGTCAACTCAAAACGTTTGCAAAACCCGATTAAAATTGCACTGGATGCGCCTTTCCTATTCGAAACAGCTGAACAACATACAGTGACGGCACGCTGATGTCGGACACCAAATTTTTCGTACGCATTACCCCAGACATGTGCTAGCTTTGGAGCTTCCTGGACGGTTACTTAAACTTCGTATCGGAATACCTCCTTCGATAAGGTTAGTGTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATTGGAAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGG] [+] EMBL BX626411 [ATGGGGCTGATCGAGTGAGCTGTTTGGCAGCATAATTGGAAAGGGGTTTTTTCATCATTGTGGATTTGCGTTATGAATGCAATGAACCAGAAATGCAATAGAAATCGTTCTATGTCGGTTCGGTTCGGCGAAAACGCAGAGTTAGGGGCGTTAGTATGCCTATGCCAAACTGTGGCAGACGTTGCTCTGTACGTTCTGCTTCAAACGCGTCAGTATAGTCTCAAACGTCAACTCAAAACGTTTGCAAAACCCGATTAAAATTGCACTGGATGCGCCTTTCCTATTCGAAACAGCTGAACAACATACAGTGACGGCACGCTGATGTCGGACACCAAATTTTTCGTACGCATTACCCCAGACATGTGCTAGCTTTGGAGCTTCCTGGACGGTTACTTAAACTTCGTATCGGAATACCTCCTTCGATAAGGTTAGTGTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATTGGAAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGG] consensusID : consensus_6602#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [CAGATCGGCACGAGGGGAGCTTCTGGACGGTTACTTAAACTTCGTATCGGAATACCTCCTTCGATAAGGTTAGTGTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATTGGAAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGGAGTCTGTTGCACTGTTCAATTCAGTGGATTTTATGAATTTTACCCACTTTTTGACATTTTTCGTAAAAGTAAAGAGTATCCCAATCGATGTGTGATGAACGTGGTATAAGGAATACACCAGGAAGCGTCATAGTTTGAAGATTGGTGAAGAGTAGCTTCACTTTAGGGGTGGTGTCACCTGTATAGGTGCTTGGTTTTTAGCCTTTCGATAGAGCAACTTACTTTGTATTAAACAAAAAGGCACACTGTATGGATCCAATCTCAACAATAGCACGGTAATCAAAAGGAAAGGGCAGATCTTTATAAAGCAGAGTTTTTTAATTCGGTAATTAATTTTAATTGA] [+] EMBL BX467849 [CAGATCGGCACGAGGGGAGCTTCTGGACGGTTACTTAAACTTCGTATCGGAATACCTCCTTCGATAAGGTTAGTGTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATTGGAAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGGAGTCTGTTGCACTGTTCAATTCAGTGGATTTTATGAATTTTACCCACTTTTTGACATTTTTCGTAAAAGTAAAGAGTATCCCAATCGATGTGTGATGAACGTGGTATAAGGAATACACCAGGAAGCGTCATAGTTTGAAGATTGGTGAAGAGTAGCTTCACTTTAGGGGTGGTGTCACCTGTATAGGTGCTTGGTTTTTAGCCTTTCGATAGAGCAACTTACTTTGTATTAAACAAAAAGGCACACTGTATGGATCCAATCTCAACAATAGCACGGTAATCAAAAGGAAAGGGCAGATCTTTATAAAGCAGAGTTTTTTAATTCGGTAATTAATTTTAATTGA] consensusID : consensus_6602#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [AAATCGCACGAGGTTGTNCACTAATGAGTAATAACTATAATTCATTAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGGAGTCTGTTGCACTGTTCAATTCAGTGGATTTTATGAATTTTACCCAACTTTTTGACATTTTCGTAAAAGTAAAGAGTATCCCAATCGATGTGTGATGAACGTGGTATAAGGAATACACCAGGAAGCGTCATAGTTTGAAGATTGGTGAAGAGTAGCTTCACTTTAGGGGTGGTGTCACCTGTATAGCGTGCTTGGTTTTGCGAGCCTTTCGATAGAGCAACNTTACTTTGTATTAAGACAAAAAGGCACACTGTATGGATCCAATCTCAAGCAANTAGCAGCGGTAATCACAAGAGAAAGGGCAGATCTTTATAAAAGGCAGAGTTTCAAGTTCGTAATTGAGTGTTGAACTNGACAG] [+] EMBL BX469225 [AAATCGCACGAGGTTGTNCACTAATGAGTAATAACTATAATTCATTAATATCAGCATCATACTGGCCAATCTGGACAAGTATTTGGCAGTATTTTGCCAATGTATGGAGTCTGTTGCACTGTTCAATTCAGTGGATTTTATGAATTTTACCCAACTTTTTGACATTTTCGTAAAAGTAAAGAGTATCCCAATCGATGTGTGATGAACGTGGTATAAGGAATACACCAGGAAGCGTCATAGTTTGAAGATTGGTGAAGAGTAGCTTCACTTTAGGGGTGGTGTCACCTGTATAGCGTGCTTGGTTTTGCGAGCCTTTCGATAGAGCAACNTTACTTTGTATTAAGACAAAAAGGCACACTGTATGGATCCAATCTCAAGCAANTAGCAGCGGTAATCACAAGAGAAAGGGCAGATCTTTATAAAAGGCAGAGTTTCAAGTTCGTAATTGAGTGTTGAACTNGACAG] consensusID : consensus_6602#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [CCCAGGCTTACGTGGCGCGCACGATGGGGCTGATCGAGTGAGCTGTTTGGCAGCATAATTGGAAAGGGGTTTTTTCATCATTGTGGATTTGCGTTATGAATGCAATGAACCAGAAATGCAATAGAAATCGTTCTATGTCGGTTCGGTTCGGCGAAAACGCAGAGTTACGTTGCTCTGTACGTTTTGCTTCAAACGCGTCAGTATAGTCTCAAACGTCAACTCAAAGCGTTTGCAAAACCCGATTAAAATTGCACTGGATGCGCCTTTCCTATTCGAAACAGTGAACAACATACAGTGACGGGACCCTGAAGTCGGACACCAAATTTTTCGTACGCATTACCTCAGATATGTGCTAGCT] [+] EMBL AL697620 [CCCAGGCTTACGTGGCGCGCACGATGGGGCTGATCGAGTGAGCTGTTTGGCAGCATAATTGGAAAGGGGTTTTTTCATCATTGTGGATTTGCGTTATGAATGCAATGAACCAGAAATGCAATAGAAATCGTTCTATGTCGGTTCGGTTCGGCGAAAACGCAGAGTTACGTTGCTCTGTACGTTTTGCTTCAAACGCGTCAGTATAGTCTCAAACGTCAACTCAAAGCGTTTGCAAAACCCGATTAAAATTGCACTGGATGCGCCTTTCCTATTCGAAACAGTGAACAACATACAGTGACGGGACCCTGAAGTCGGACACCAAATTTTTCGTACGCATTACCTCAGATATGTGCTAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6602#2 CAGATCGGCACGAGGGGAGCTTCTGGACGGTTACTTAAACTTCGTATCGGAATACCTCCT 60 consensus_6602#3 ------------------------------------------------------------ consensus_6602#0 ------------------------------------------------------------ consensus_6602#1 ------------------------------------------------------------ consensus_6602#4 ------------------------------------------------------------ consensus_6602#2 TCGATAAGGTTAGTGTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATTGG 120 consensus_6602#3 ------------------------------------------------------------ consensus_6602#0 ---GATNGCCGAGGNTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTAT-GG 56 consensus_6602#1 ------------------------------------------------------------ consensus_6602#4 ------------------------------------------------------------ consensus_6602#2 AAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTT 180 consensus_6602#3 ----------------------------------------------AAATCGCACGAGGT 14 consensus_6602#0 AAGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTT 116 consensus_6602#1 ------------------------------------------------ATGGGGCTGATC 12 consensus_6602#4 -------------------------CCCAGGCTTACGTGGCGCGCACGATGGGGCTGATC 35 * * consensus_6602#2 ACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTG 240 consensus_6602#3 TGTN-CACTAATGAGTAATAACTATAATTCATTAATATCAGCATCATACTGGCCAATCTG 73 consensus_6602#0 ACTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTG 176 consensus_6602#1 GAGTGAGCTGTTTGGCAG----CATAATTGGAAAGGGGTTTTTTCATCATTGTGGATTTG 68 consensus_6602#4 GAGTGAGCTGTTTGGCAG----CATAATTGGAAAGGGGTTTTTTCATCATTGTGGATTTG 91 ** * * * ****** * **** * * ** ** consensus_6602#2 GACAAGTATTTGGCAGTATTTTGCCAATGTA-TGGAGTCTGTTGCA---CTGTTCAATTC 296 consensus_6602#3 GACAAGTATTTGGCAGTATTTTGCCAATGTA-TGGAGTCTGTTGCA---CTGTTCAATTC 129 consensus_6602#0 GACAAGTATTTGGCAGTATTTTGCCAATGTA-TGGAGTCTGTTGCA---CTGTTCAATTC 232 consensus_6602#1 CGTTATGAAT--GCAATGAACCAGAAATGCAATAGAAATCGTTCTATGTCGGTTCGGTTC 126 consensus_6602#4 CGTTATGAAT--GCAATGAACCAGAAATGCAATAGAAATCGTTCTATGTCGGTTCGGTTC 149 * * * *** * **** * * ** *** * * **** *** consensus_6602#2 AGTGGATTTTATGAATTTTACCCA-CTTTTTGACATTTTTCGTAA-AAGTAAAGAGTATC 354 consensus_6602#3 AGTGGATTTTATGAATTTTACCCAACTTTTTGACATTTT-CGTAA-AAGTAAAGAGTATC 187 consensus_6602#0 AGTGGATTTTATGAATTTTACCCA-CTTTTTGACATTTTTCGTAACAAGTAAAGAGTATC 291 consensus_6602#1 GGCGAAAACGCAGAGTTAGGGGCGTTAGTATGCCTATGCCAAACTGTGGCAGACGTTGCT 186 consensus_6602#4 GGCGAAAACGCAGAGTTA-----------------------------------CGTTGCT 174 * * * ** ** * consensus_6602#2 CCAATCGATGTGTGATGAACGTG---GTATAA----GGAATACACCAGGAAGCGTCA-TA 406 consensus_6602#3 CCAATCGATGTGTGATGAACGTG---GTATAA----GGAATACACCAGGAAGCGTCA-TA 239 consensus_6602#0 CCAATCGATGTGTGATGAACGTG---GTATAA----GGAATACACCAGGAAGCGTCACTA 344 consensus_6602#1 CTGTACGTTCTGCTTCAAACGCGTCAGTATAGTCTCAAACGTCAACTCAAAACGTTTGCA 246 consensus_6602#4 CTGTACGTTTTGCTTCAAACGCGTCAGTATAGTCTCAAACGTCAACTCAAAGCGTTTGCA 234 * ** * ** **** * ***** * ** * ** *** * consensus_6602#2 G-TTTGAA--GA--TTGG-TGAAGAGTAGCTTCAC-TTTAGGGG-TGGTG-TCACCTG-T 456 consensus_6602#3 G-TTTGAA--GA--TTGG-TGAAGAGTAGCTTCAC-TTTAGGGG-TGGTG-TCACCTG-T 289 consensus_6602#0 GCTTTGAA--GCACTTGGCTGAAGAGTAGCTTCACCTTTAGCGGCTGGTGCTCACCTGGT 402 consensus_6602#1 AAACCCGATTAAAATTGCACTGGATGCGCCTTTCCTATTCGAAACAGCTGAACAACATAC 306 consensus_6602#4 AAACCCGATTAAAATTGCACTGGATGCGCCTTTCCTATTCGAAACAG-TGAACAACATAC 293 * *** * *** * ** * * ** ** * consensus_6602#2 A-TAG-G-TGCT-TG--GTTTTT-----AGCCTTTCG-------ATAGAGCAACTT-ACT 497 consensus_6602#3 A-TAGCG-TGCT-TG--GTTTTGC---GAGCCTTTCG-------ATAGAGCAACNTTACT 334 consensus_6602#0 ACTAGCGCTGCTCTG--GCTCTTCTCTACGCCCCTCTTCGCACTACGCAGCCAACTTACT 460 consensus_6602#1 AGTGACGGCACGCTGATGTCGGACACCAAATTTTTCGT------ACGCATTACCCCAGAC 360 consensus_6602#4 AGTGACGGGACCCTGAAGTCGGACACCAAATTTTTCGT------ACGCATTACCTCAGAT 347 * * * * ** * ** * * consensus_6602#2 TTGTATTA---A-ACAAAAAGGCACACTGTATGGATCCAATCTCAAC--AATAGCA-CGG 550 consensus_6602#3 TTGTATTA---AGACAAAAAGGCACACTGTATGGATCCAATCTCAAGCAANTAGCAGCGG 391 consensus_6602#0 TTGTACTCTACACACACACACACACGCGGCACCACCCTGCTNCCTGCGCACTCACACCTC 520 consensus_6602#1 ATGTGCTAGCTTTGGAGCTTCCTGGACGGTTACTTAAACTTCGTATCGGAATACCTCCTT 420 consensus_6602#4 ATGTGCTAGCT------------------------------------------------- 358 *** * consensus_6602#2 TAATCA-AAAGGAAA------GGGCAGATCTTTATAAAGCAGAGTTTTTTAATTCGGTAA 603 consensus_6602#3 TAATCACAAGAGAAA------GGGCAGATCTTTATAAAAGGCAGAGTTTCAAGTTCGTAA 445 consensus_6602#0 TAACCCACACCTACGCCCACCGGCCTCACNCTCCACCCCAGCACACACGCGGGCACGCAC 580 consensus_6602#1 CGATAAGGTTAGTGTTTCACGAGTATGGCCATTTTGCCATATATGGTTGAATGTATTGGA 480 consensus_6602#4 ------------------------------------------------------------ consensus_6602#2 TTAATTTT--AATTGA-------------------------------------------- 617 consensus_6602#3 TTGAGTGTTGAACTNGACAG---------------------------------------- 465 consensus_6602#0 TCCTNTCT--ACTTCACCNCCACGCACGCCTTTTTTACCCTCTCCGCTACCCTCTCACCT 638 consensus_6602#1 AGAGATATTTCCAACTTAGGTTCTCTGGTACGCACATGACGTTCCAAAACAACCTATTTA 540 consensus_6602#4 ------------------------------------------------------------ consensus_6602#2 ------------------------------------------------------------ consensus_6602#3 ------------------------------------------------------------ consensus_6602#0 CNTCACCCCTCCGCNCCACGCCCCCCCTCCCCTCCCCCCCCCCCNGCCCCTCGCCCCGCC 698 consensus_6602#1 CTAGCACTAATGAGTAATAACTATAATTATTAAATATCAGCATCATACTGGCCAATCTGG 600 consensus_6602#4 ------------------------------------------------------------ consensus_6602#2 ------------------------------------------------------------ consensus_6602#3 ------------------------------------------------------------ consensus_6602#0 CNCCCCNCGCCCTCCCCCCCCTCCCCGCCCTCACTNCTCCCACTCCTCCGGCCCTTGTCT 758 consensus_6602#1 ACAAGTATTTGGCAGTATTTTGCCAATGTATGG--------------------------- 633 consensus_6602#4 ------------------------------------------------------------ consensus_6602#2 ----------- consensus_6602#3 ----------- consensus_6602#0 TACTCGTGTCT 769 consensus_6602#1 ----------- consensus_6602#4 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||