These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1065 fasta sequence [CCGGCCGCCCGATGGCGGTGATGGTGGGCTCGGCATGGCGTCACTGTTACCGGCCCTACCGAGCGGTAGTGCGACGGTCCCGGGCGCTCCCAATGGTTCACCGTTGGCCGGTGGTAGCAGCGGCAGTAGTAACGGTGCTGCACCATCCGCTTCCTCGTCGGCTGCAGCGTCCTGTTCGCAGCAGGCCCGCCTTAACGCCATGCCGTGTGATGTGACGATCGACGAGATGGCGAGCTACTTCGAGACGCTCGTTTACATCCCGAAAAAGATGTCGACGATGGCGGAGATGATGTACATTTAGGGTGTGTTAGGGGGCGAGAAGAGGAGGCGATTACCACGTGAGCACGCGCACCGATCGCGTGATCTGGTTCCGCGCTTCGGGTGGTAGTGGTTCCGGTTCGTAAAACGGTGTCGTGTCCTGTACATTTATTTCACTATTCCTTTGTTGGGTGTTGTAAGCATTATCGTAACCGTGTCGTTCTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGAACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACTTTGTATGG-AAATATCAGTTAGTTTAATGTGGAATGTCTATAATTCTGGCCAACGCACCTGCGTACGCTGGTTTTACTAGCATGTTCGAACGGGATAAAGAGTAGCGAAAAATGAAAATGATCTGTATAACTGTCCCTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTTCTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACAGATACGCGACCTCGAATGTGTGTGAGTGTGTTTTGTTTTCTCTACAAACAGTTCAGCCTATTTCGAAGGGTGACGATACGATCAATATTCCCCGGGTTTTTCCATTTAAAT] [+] EMBL BM644852 [CCGGCCGCCCGATGGCGGTGATGGTGGGCTCGGCATGGCGTCACTGTTACCGGCCCTACCGAGCGGTAGTGCGACGGTCCCGGGCGCTCCCAATGGTTCACCGTTGGCCGGTGGTAGCAGCGGCAGTAGTAACGGTGCTGCACCATCCGCTTCCTCGTCGGCTGCAGCGTCCTGTTCGCAGCAGGCCCGCCTTAACGCCATGCCGTGTGATGTGACGATCGACGAGATGGCGAGCTACTTCGAGACGCTCGTTTACATCCCGAAAAAGATGTCGACGATGGCGGAGATGATGTACATTTAGGGTGTGTTAGGGGGCGAGAAGAGGAGGCGATTACCACGTGAGCACGCGCACCGATCGCGTGATCTGGTTCCGCGCTTCGGGTGGTAGTGGTTCCGGTTCGTAAAACGGTGTCGTGTCCTGTACATTTATTTCACTATTCCTTTGTTGGGTGTTGTAAGCATTATCGTAACCGTGTCGTTCTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGAACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACTTTG ] [+] EMBL BX613382 [ CGGCCCTACCGAGCGGTAGTGCGACGGTCCCGGGCGCTCCCAATGGTTCACCGTTGGCCGGTGGTAGCAGCGGCAGTAGTAACGGTGCTGCACCATCCGCTTCCTCGTCGGCTGCAGCGTCCTGTTCGCAGCAGGCCCGCCTTAACGCCATGCCGTGTGATGTGACGATCGACGAGATGGCGAGCTACTTCGAGACGCTCGTTTACATCCCGAAAAAGATGTCGACGATGGCGGAGATGATGTACATTTAGGGTGTGTTAGGGGGCGAGAAGAGGAGGCGATTACCACGTGAGCACGCGCACCGATCGCGTGATCTGGTTCCGCGCTTCGGGTGGTAGTGGTTCCGGTTCGTAAAACGGTGTCGTGTCCTGTACATTTATTTCACTATTCCTTTGTTGGGTGTTGTAAGCATTATCGTAACCGTGTCGTTCTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGAACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGT ] [+] EMBL BM580679 [ ccgGGTTCCGGTTCGTAAAACGGTGTCGTGTCCTGTACATTTATTTCACTATTCCTTTGTTGGGTGTTGTAAGCATTATCGTAACCGTGTCGTTCTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGAACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACTTTGTATGG AAATATCAGTTAGTTTAATGTGGAATGTCTATAATTCTGGCCAACGCACCTGCGTACGCTGGTTTTACTAGCATGTTCGAACGGGATAAAGAGTAGCGAAAAATGAAAATGATCTGTATAACTGTCCCTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTTCTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACAGATACGCGACCTCGAATGTGTGTGAGTGTGTTTTGTTTTCTCTACAAACAGTTCAGCCTATTTCGAAGGGTGACGATACGATCAATATTCCCCGGGTTTTTCCATTTAAAT] [+] EMBL BX603153 [ GTGTCGTTCTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGAACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACTTTGTATGGAAAATATCAGTTAGTTTTATGTGGAATGTCTATAATTC ] consensusID : consensus_6609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [ACATGCCTGCTTTTTTGTTTTATTTTTTTTTTTTTTTTTTTCCTTTTTTTCTTTTTTTTTACACTAAATCTATCTTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTAGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACATTGTATGGAAATATCAGTTAGTTTAATGTGGAATGTCTATAATTCTGGCCTACGCACATGCGTACGCTGGTTTTACAAGCAAGTTCGAATAAATGGGATAACGAGTAGCGAAAAATGAAAATGATCTGTAGAACTGTCCCTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTTCTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACAGGTACGCGACCTCGAATGTGTGTGTGAGTGTGTTTCGTTTGTCTCTACAAACAGTTCAGCCTATTTCGAAGGGTGACGATACGATCAATATTCCCGGGTTTTTCCATTTAAATGTAATCCTGAACTCTGTAATCCTNATTTAAGTNTCNCATGGTCAACACTT] [+] EMBL BX466868 [ACATGCCTGCTTTTTTGTTTTATTTTTTTTTTTTTTTTTTTCCTTTTTTTCTTTTTTTTTACACTAAATCTATCTTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTAGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACATTGTATGGAAATATCAGTTAGTTTAATGTGGAATGTCTATAATTCTGGCCTACGCACATGCGTACGCTGGTTTTACAAGCAAGTTCGAATAAATGGGATAACGAGTAGCGAAAAATGAAAATGATCTGTAGAACTGTCCCTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTTCTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACAGGTACGCGACCTCGAATGTGTGTGTGAGTGTGTTTCGTTTGTCTCTACAAACAGTTCAGCCTATTTCGAAGGGTGACGATACGATCAATATTCCCGGGTTTTTCCATTTAAATGTAATCCTGAACTCTGTAATCCTNATTTAAGTNTCNCATGGTCAACACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6609#0 CCGGCCGCCCGATGGCGGTGATGGTGGGCTCGGCATGGCGTCACTGTTACCGGCCCTACC 60 consensus_6609#1 ------------------------------------------------------------ consensus_6609#0 GAGCGGTAGTGCGACGGTCCCGGGCGCTCCCAATGGTTCACCGTTGGCCGGTGGTAGCAG 120 consensus_6609#1 ------------------------------------------------------------ consensus_6609#0 CGGCAGTAGTAACGGTGCTGCACCATCCGCTTCCTCGTCGGCTGCAGCGTCCTGTTCGCA 180 consensus_6609#1 ------------------------------------------------------------ consensus_6609#0 GCAGGCCCGCCTTAACGCCATGCCGTGTGATGTGACGATCGACGAGATGGCGAGCTACTT 240 consensus_6609#1 ------------------------------------------------------------ consensus_6609#0 CGAGACGCTCGTTTACATCCCGAAAAAGATGTCGACGATGGCGGAGATGATGTACATTTA 300 consensus_6609#1 ------------------------------------------------------------ consensus_6609#0 GGGTGTGTTAGGGGGCGAGAAGAGGAGGCGATTACCACGTGAGCACGCGCACCGATCGCG 360 consensus_6609#1 ------------------------------------------------------------ consensus_6609#0 TGATCTGGTTCCGCGCTTCGGGTGGTAGTGGTTCCGGTTCGTAAAACGGTGTCGTGTCCT 420 consensus_6609#1 ------------------------------------------------------------ consensus_6609#0 GTACATTTATTTCACTATTCCTTTGTTGGGTGTTGTAAGCATTATCGTAACCGTGTCGTT 480 consensus_6609#1 ------------------------------------------------------------ consensus_6609#0 CTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGA 540 consensus_6609#1 ---------------------------------------ACATGCCTGCTTTTTTGTTTT 21 * ** * * consensus_6609#0 ACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCT-GTAGG 599 consensus_6609#1 ATTTTTTTTTTTTTTTTTTTCCTTTTTTTCTTTTTTTTTACACTAAATCTATCTTGTAGG 81 * * * * * * * **** * ********************** ***** consensus_6609#0 CAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGT-GA 658 consensus_6609#1 CAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTAGA 141 ********************************************************* ** consensus_6609#0 GTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACTTTGTATGGAAATATCAGTT 718 consensus_6609#1 GTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACATTGTATGGAAATATCAGTT 201 **************************************** ******************* consensus_6609#0 AGTTTAATGTGGAATGTCTATAATTCTGGCCAACGCACCTGCGTACGCTGGTTTTACTAG 778 consensus_6609#1 AGTTTAATGTGGAATGTCTATAATTCTGGCCTACGCACATGCGTACGCTGGTTTTACAAG 261 ******************************* ****** ****************** ** consensus_6609#0 CATGTTCGAAC----GGGATAAAGAGTAGCGAAAAATGAAAATGATCTGTATAACTGTCC 834 consensus_6609#1 CAAGTTCGAATAAATGGGATAACGAGTAGCGAAAAATGAAAATGATCTGTAGAACTGTCC 321 ** ******* ******* **************************** ******** consensus_6609#0 CTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTT 894 consensus_6609#1 CTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTT 381 ************************************************************ consensus_6609#0 CTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACA 954 consensus_6609#1 CTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACA 441 ************************************************************ consensus_6609#0 GATACGCGACCTCGAATGTGTGTG--AGTGTGTTTTGTTT-TCTCTACAAACAGTTCAGC 1011 consensus_6609#1 GGTACGCGACCTCGAATGTGTGTGTGAGTGTGTTTCGTTTGTCTCTACAAACAGTTCAGC 501 * ********************** ********* **** ******************* consensus_6609#0 CTATTTCGAAGGGTGACGATACGATCAATATTCCCCGGGTTTTTCCATTTAAAT------ 1065 consensus_6609#1 CTATTTCGAAGGGTGACGATACGATCAATATTCCC-GGGTTTTTCCATTTAAATGTAATC 560 *********************************** ****************** consensus_6609#0 -------------------------------------------- consensus_6609#1 CTGAACTCTGTAATCCTNATTTAAGTNTCNCATGGTCAACACTT 604 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||