These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1472 fasta sequence [TCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCGACGTGCAATATCCAAGGCAGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCCTCCGGTTCTCCAGCTACCGCCGAGGATGCGACCACCCGACCGTCGGCCCCGTTGCAGTACCGCGTGGTAGCAAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCATGCGGACGTCGATACTCCCGTGTTCATGCCGGTTGGTACGCAGGGCACGCTGAAGGGGGTGCTGCCCGAGCAGCTGCTTGCCCTCGACTGCCGCATCATGCTCGGCAACACGTACCATCTCGGTATGCGGCCCGGCACAACCGTGCTGGAGAAGGCGGGCGGTTTGCACCGGTTCATGGGCTGGCCCCGGGCACTGCTGACCGATTCCGGGGGCTTTCAGATGGTGTCGCTGCTGCAGCTGGCCGAAATCACCGAGCAGGGCGTCCGGTTCCAGAGCCCGTACGACGGGAGCGAGTGCATGCTGACGCCGGAACGCAGCATGGAGATACAGAACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGGTGAAGACGACGACGACGGGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGCTGGATCGAAGCATCGGCGCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCC-GGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTGCCGT-GGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGAT-GGGGGTCGGCTTCGCGGCCGATCTGGTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACGCGTACGGCCCGGTTTCGGCTG-GCGCTGACACGCGCCGGACAGATCAACCTGAAGCAGCGCACGTTCGCGCAGGACATGCGCCCGATCGAGGACGATTGCGACTGCTCGACGTGTCGGACGTATACGCGCGCGTACCTGCACCACATCGTCACGGTCGAACCGGTGGCGTGCAGCATCGTGAGCGTACACAACGTGGCCTTCCAGCTGCGGCTGGTGGGCGACATGCGGGAAGCCATCCAGGAGGGCCGCTTTCCGGCGTTTGTGAAATCGTACATGGCCCT-CGGTTCCCGGACGATACGGTGCCGCAATGGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTCGCGGTTTGCGGTTCGACGACCCAGTTCCATTCCTGCGTAATTTAAACCAAACTTTGACGGGGATTTCTACCCAAAATGTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAATTAATAAATTTATTCGTAATCCGCAAAAAAAA] [+] EMBL CNS09JL6 [TCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCGACGTGCAATATCCAAGGCAGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCCTCCGGTTCTCCAGCTACCGCCGAGGATGCGACCACCCGACCGTCGGCCCCGTTGCAGTACCGCGTGGTAGCAAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCATGCGGACGTCGATACTCCCGTGTTCATGCCGGTTGGTACGCAGGGCACGCTGAAGGGGGTGCTGCCCGAGCAGCTGCTTGCCCTCGACTGCCGCATCATGCTCGGCAACACGTACCATCTCGGTATGCGGCCCGGCACAACCGTGCTGGAGAAGGCGGGCGGTTTGCACCGGTTCATGGGCTGGCCCCGGGCACTGCTGACCGATTCCGGGGGCTTTCAGATGGTGTCGCTGCTGCAGCTGGCCGAAATCACCGAGCAGGGCGTCCGGTTCCAGAGCCCGTACGACGGGAGCGAGTGCATGCTGACGCCGGAACGCAGCATGGAGATACAGAACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGGTGAAGACGACGACGACGGGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGCTGGATCGAAGCATCGGCGCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCC GGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTG CGTGGGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGATGGGGGGTCGGCTTCGCGGCCGATCTGGTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACG ] [-] EMBL CNS09JL7 [ GGAACGCAGCATGGAGATACAGAACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGGTGAAGACGACGACGACGGGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGCTGGATCGAAGCATCCGCGCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCCGGGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTGCCGT GGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGAT GGGGGTC GCTTCGCGGCCGATCTGGTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACGCGTACGGCCCGGTTTCGGCTG GCGCTGACACGCGCCGGACAGATCAACCTGAAGCAGCGCACGTTCGCGCAGGACATGCGCCCGATCGAGGACGATTGCGACTGCTCGACGTGTCGGACGTATACGCGCGCGTACCTGCACCACATCGTCACGGTCGAACCGGTGGCGTGCAGCATCGTGAGCGTACACAACGTGGCCTTCCAGCTGCGGCTGGTGGGCGACATGCGGGAAGCCATCCAGGAGGGCCGCTTTCCGGCGTTTGTGAAATCGTACATGGCCCT CGGTTCCCGGACGATACGGTGCCGCAATGGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTCGCGGTTTGCGGTTCGACGACCCAGTTCCATTCCTGCGTAATTTAAACCAAACTTTGACGGGGATTTCTACCCAAAATGTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAATTAATAAATTTATTCG ] [+] EMBL AGA282588 [ GCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCC GGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTGCCGT GGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGAT GGGGGTCGGCTTCGCGGCCGATCTGGTCGTTTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACGCGTACGGCCCGG TTCGGCTGCGCGCTGACACGCGCCGGACAGATCAACCTGAAGCAGCGCACGTTCGCGCAGGATATGCGCCCGATCGAGGACGA ] [-] EMBL AGA280957 [ tgGGCGTCCAGTATCGTGAGCGTACACAACGTGGCCTTCCAGCTGCGGCTGATGGGCGACATGCGGGACGCCATCCAGGAGGGCCGCTTTCCGGCGTTTGTGAAATCGTACATGGCCGTCCGGTTCCCGGAAGATACGGTGCCGCAATGGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTCGCGGTTTGCCGTTCGACGACCCAGTTCCATTCCTGCGCAATTTAAACCAAACTTTGACGGGGATTTCTGCCCAAAATGTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAATTAAT AATTTATTCGTAATCCGCAAAAAAAA] consensusID : consensus_6611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [AGAATCGGCCACGAGGNGTAAAAAGTAGAAGAAGAAACGTGTGCGCGCCGGCTGGTTGATTGCATGTTTACACCGCGAGCAATCAAGTTCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCAAGCAATATCCAAGGCTGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCGTCCGGTTCTCCAGCGTTCCGCCGAGGATGCGTACACCCGACCGTCGGCCCGGTTGCAGTACCGCGTGGTAGCGAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCACGCGGACGTCAGATACTCCCGTGTTCATGCCGGTCGGTACGCAGGGGCACGCTGAAGAGGGGTAGCGTNGNCCGAGCAGCGTAGNTTGCCCTCGACTGCCGCATCATAGCTCGGNAACACGTACCATCGTCGGTATAGCGGACCCGGCACAANCGTGCTGGAGAAGGCGGGCGGTANTTGCAC] [+] EMBL BX469213 [AGAATCGGCCACGAGGNGTAAAAAGTAGAAGAAGAAACGTGTGCGCGCCGGCTGGTTGATTGCATGTTTACACCGCGAGCAATCAAGTTCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCAAGCAATATCCAAGGCTGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCGTCCGGTTCTCCAGCGTTCCGCCGAGGATGCGTACACCCGACCGTCGGCCCGGTTGCAGTACCGCGTGGTAGCGAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCACGCGGACGTCAGATACTCCCGTGTTCATGCCGGTCGGTACGCAGGGGCACGCTGAAGAGGGGTAGCGTNGNCCGAGCAGCGTAGNTTGCCCTCGACTGCCGCATCATAGCTCGGNAACACGTACCATCGTCGGTATAGCGGACCCGGCACAANCGTGCTGGAGAAGGCGGGCGGTANTTGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6611#0 ------------------------------------------------------------ consensus_6611#1 AGAATCGGCCACGAGGNGTAAAAAGTAGAAGAAGAAACGTGTGCGCGCCGGCTGGTTGAT 60 consensus_6611#0 ----------------------------TCCTCCGTTCTCCGGGCACGCGTGCGCCCATC 32 consensus_6611#1 TGCATGTTTACACCGCGAGCAATCAAGTTCCTCCGTTCTCCGGGCACGCGTGCGCCCATC 120 ******************************** consensus_6611#0 ACAACCTCCATCGCCCGACGTGCAATATCCAAGGCAGTGATGGACACAGTGCCGAAAGAA 92 consensus_6611#1 ACAACCTCCATCGCCCAA---GCAATATCCAAGGCTGTGATGGACACAGTGCCGAAAGAA 177 **************** * ************** ************************ consensus_6611#0 GTGCCCATTCCGGCCTCCGGTTCTCCAGC-TACCGCCGAGGATGCGACCACCCGACCGTC 151 consensus_6611#1 GTGCCCATTCCGGCGTCCGGTTCTCCAGCGTTCCGCCGAGGATGCGTACACCCGACCGTC 237 ************** ************** * ************** ************ consensus_6611#0 GGCCCCGTTGCAGTACCGCGTGGTAGCAAAATGCGGCGTGACAAAGGCGCGCGTTGGCGT 211 consensus_6611#1 GGCCCGGTTGCAGTACCGCGTGGTAGCGAAATGCGGCGTGACAAAGGCGCGCGTTGGCGT 297 ***** ********************* ******************************** consensus_6611#0 GATGAGCGTTCGGCATGCGGACGTC-GATACTCCCGTGTTCATGCCGGTTGGTACGCAGG 270 consensus_6611#1 GATGAGCGTTCGGCACGCGGACGTCAGATACTCCCGTGTTCATGCCGGTCGGTACGCAGG 357 *************** ********* *********************** ********** consensus_6611#0 G-CACGCTGAAGGGGG----TGCTGCCCGAGCAGCT--GCTTGCCCTCGACTGCCGCATC 323 consensus_6611#1 GGCACGCTGAAGAGGGGTAGCGTNGNCCGAGCAGCGTAGNTTGCCCTCGACTGCCGCATC 417 * ********** *** * * ********* * ******************** consensus_6611#0 AT-GCTCGGCAACACGTACCATC-TCGGTAT-GCGG-CCCGGCACAACCGTGCTGGAGAA 379 consensus_6611#1 ATAGCTCGGNAACACGTACCATCGTCGGTATAGCGGACCCGGCACAANCGTGCTGGAGAA 477 ** ****** ************* ******* **** ********** ************ consensus_6611#0 GGCGGGCGGT--TTGCACCGGTTCATGGGCTGGCCCCGGGCACTGCTGACCGATTCCGGG 437 consensus_6611#1 GGCGGGCGGTANTTGCAC------------------------------------------ 495 ********** ****** consensus_6611#0 GGCTTTCAGATGGTGTCGCTGCTGCAGCTGGCCGAAATCACCGAGCAGGGCGTCCGGTTC 497 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 CAGAGCCCGTACGACGGGAGCGAGTGCATGCTGACGCCGGAACGCAGCATGGAGATACAG 557 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 AACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGGTGAAGACGACGACGACG 617 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 GGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGCTGGATCGAAGCATCGGC 677 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 GCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCCG 737 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 GACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTGCCGTG 797 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 GGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACG 857 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 GATCTGCTGCCGGAGGATAAACCGCGCTACCTGATGGGGGTCGGCTTCGCGGCCGATCTG 917 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 GTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACGCGTACGGCC 977 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 CGGTTTCGGCTGGCGCTGACACGCGCCGGACAGATCAACCTGAAGCAGCGCACGTTCGCG 1037 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 CAGGACATGCGCCCGATCGAGGACGATTGCGACTGCTCGACGTGTCGGACGTATACGCGC 1097 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 GCGTACCTGCACCACATCGTCACGGTCGAACCGGTGGCGTGCAGCATCGTGAGCGTACAC 1157 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 AACGTGGCCTTCCAGCTGCGGCTGGTGGGCGACATGCGGGAAGCCATCCAGGAGGGCCGC 1217 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 TTTCCGGCGTTTGTGAAATCGTACATGGCCCTCGGTTCCCGGACGATACGGTGCCGCAAT 1277 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 GGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTCGCGGTTTGCGGTTCGAC 1337 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 GACCCAGTTCCATTCCTGCGTAATTTAAACCAAACTTTGACGGGGATTTCTACCCAAAAT 1397 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 GTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAATTAATAAATTTATTCGT 1457 consensus_6611#1 ------------------------------------------------------------ consensus_6611#0 AATCCGCAAAAAAAA 1472 consensus_6611#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||