These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1056 fasta sequence [AAGAGCAACAAAGTCCAACACCAGTTCCGGTCGGTAAAGTGATCTCAAACGGGTCTTCTACTGNGGCTAGTCCACAAGGTTCTCTCTTAACAGCCAGCGTAACGTCTAAAGCTGGTGCTAGTCAAACGGATTCGCCGATAAAGGTAACTCCTGGACGTATTAATNTGGCACCGTCTAGTCCTGCAAAGCTGNCAAATGGAAGTATTCCGACGGGTAGTTCTGTGTCGAACGGAANTGCATTCAAAATTAACAGCTTCCAACCGAAATCACCTCCAACAAGCTCTACAAATCAAGATCCAGCTAAGATAACGAACGGAAATTCCTACTCAAACACACTTCCAAGGGCAAATGGAGTATCGGCTTCGAAGGCCACTCCCAAAACATCGACCGGAGCCATTCCGACTACGTACACNTAGCACCGTAAAAGTGTCCATCGGAAGTTTTGGAGATAGTTTGCGNGGAGCCAGCGGTAATCCAAATGCGGGACTACGAAACGGCAATCCTACCAAGTCCTACGAACCACTTACCATCGATACGACATCGAACGGGGGGAGCAAGCACCGCCANATTCGTCGCCAACCACTCCGAAAGAACTGCTGTCGCCACAGGNTACGAAGTGGTGCTGCTTCGATACGGCCGTCACAGATTCGAACCCTTACCAAGGCGGGCAGTGTCGTCAGTCACACGGACATCCTGGAGACGGCCAAACCGGTCAACAAGCTGCCTGTAACGTTGGTCGAACCGGCCCCCGTACTGACTGCTGCTGCTGCCGTATCACCCCCACCGAAGGTGCCCATCGCCAACAACACGGCGCCTCTTCCTTCATCATCACCCGCCAAAGTGGAGCGTACTCCGTTGTTTGAGAAGGCTAACAAAGAGCCACCGAAAAGTTCATTGAATCGGTGGGCTGACAGTAGTAGTAGTAGTGGCAATAGTTCAGTTTCCGGCGGTACAGCACGCAAACTGTTGCTCACACACGGACGACCCAACTTTACGATCAAACGATCCAACTCACGGCAAGGGNTCGATGTGGATGTGGCAGATTCGAAAACCGAT] [+] EMBL BX621164 [AAGAGCAACAAAGTCCAACACCAGTTCCGGTCGGTAAAGTGATCTCAAACGGGTCTTCTACTGNGGCTAGTCCACAAGGTTCTCTCTTAACAGCCAGCGTAACGTCTAAAGCTGGTGCTAGTCAAACGGATTCGCCGATAAAGGTAACTCCTGGACGTATTAATNTGGCACCGTCTAGTCCTGCAAAGCTGNCAAATGGAAGTATTCCGACGGGTAGTTCTGTGTCGAACGGAANTGCATTCAAAATTAACAGCTTCCAACCGAAATCACCTCCAACAAGCTCTACAAATCAAGATCCAGCTAAGATAACGAACGGAAATTCCTACTCAAACACACTTCCAAGGGCAAATGGAGTATCGGCTTCGAAGGCCACTCCCAAAACATCGACCGGAGCCATTCCGACTACGTACACNTAGCACCGTAAAAGTGTCCATCGGAAGTTTTGGAGATAGTTTGCGNGGAGCCAGCGGTAATCCAAATGCGGGACTACGAAACGGCAATCCTACCAAGTCCTACGAACCACTTACCATCGATACGACATCGAACGGGGGGAGCAAGCACCGCCANATTCGTCGCCAACCACTCCGAAAGAACTGCTGTCGCCACAGGNTACGAAGTGGTGCTGCTTCGATACGGCCGT ] [+] EMBL BX623406 [ AATCACCTCCAACAAGCTCTACAAATCAAGATCCAGCTAAGATAACGAACGGAAATTCCTACTCAAACACACTTCCAAGGGCAAATGGAGTATCGGCTTCGAAGGCCACTCCCAAAACATCGACCGGAGCCATTCCGACTACGTACAC TAGCACCGTAAAAGTGTCCATCGGAAGTTTTGGAGATAGTTTGCGTGGAGCCAGCGGTAATCCAAATGCGGGACTACGAAACGGCAATCCTACCAAGTCCTACGAACCACTTACCATCGATACGACATCGAAC GGGGGAGCAAGCACCGCCA ATTCGTCGCCAACCACTCCGAAAGAACTGCTGTCGCCACAGG TACGAAGTGGTGCCGCTTCGATACGGCCGTCACAGATTCGAACCCTTACCAAGGCGGGCAGTGTCGTCAGTCACACGGACATCCTGGAGACGGCCAAACCGGTCAACAAGCTGCCTGTAACGTTGGTCGAACCGGCCCCCGTACTGACTGCTGCTGCTGCCGTATCACCCCCACCGAAGGTGCCCATCGCCAACAACACGGCGCCTCTTCCTTCATCATCACCCGCCAAAGTGGAGCGTACTCCGTTGTTTGAGAAGGCTAACAAAGAGCCACCGAAAAGTTCATTGAATCGGTGGGCTGACAGTAGTAGTAGTAGTGGCAATAGTTCAGTTTCCGGCGGTACAGCACGCAAACTGTTGCTCACACACGGACGACCCAACTTTACGATCAAACGATCCAACTCACGGCAAGGGNTCGATGTGGATGTGGCAGATTCGAAAACCGAT] consensusID : consensus_6631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence [CNGANGCAGAATCCCTGNGGTTATTACAGCTTCCAACCGAAATCACCTCCAACAAGCTCTACAAATCAAGATCCAGCTAAGATAACGAACGGAAATTCCTACTACAAACACACTTCCAAGGTGCAAATGGAGTATACGGCTTACGAAGTGCCACTCCCAAAACATCGACCGGAGCCATTCCGACTACGTACACTAGCACGTAAAAGTGTCCATCGGAAGTTTTGGAGATAGTTGCGTGGAGCCAGCTGGTTAATCCAAATGCGGGACTACGAAACGGAATCCTACCAAGTCCTACGAACCACTTAACCATCGATACGACATCGAAACGGGGGAGCAACACCTGCCCAATTCNGTTCGGCAACCAAGATCCGAAAGAACTTGCTGTACGCCCACCAGGGTACCNGAAGTTGGGTTGGCCCGCATNTACGATTAACGTGCCCTGTTACACCAGAATTCCGAACACCCCCTTTTAACCAAAGGGGCACGGGCACGTTGTNCTCGTTCCATGTTCACAACTGNGAACACATTCCCTTTGNNAAGGAACCTGGGGGGCCAAAAAACATNACTGGGNTTCCCAACNACAAATGNCCTTTGACCCTTGGTTAACACACTGGTANAGGAGGANCCATGNAAAANACATGGGGATGCCCCACCCCGGAGCTGAACCTTTGGGACGTTGGGCCTNATGGCTTGGANTTCTGACGACCTGGGATGATTTCAATCAGCNCGCCGAACCANGGATANATTGGTTGGGACCCANACATTACCGCGGCACACAAACGANAACCAACCACGGCCNGGCCCTCATTTNACCTTT] [+] EMBL AL695710 [CNGANGCAGAATCCCTGNGGTTATTACAGCTTCCAACCGAAATCACCTCCAACAAGCTCTACAAATCAAGATCCAGCTAAGATAACGAACGGAAATTCCTACTACAAACACACTTCCAAGGTGCAAATGGAGTATACGGCTTACGAAGTGCCACTCCCAAAACATCGACCGGAGCCATTCCGACTACGTACACTAGCACGTAAAAGTGTCCATCGGAAGTTTTGGAGATAGTTGCGTGGAGCCAGCTGGTTAATCCAAATGCGGGACTACGAAACGGAATCCTACCAAGTCCTACGAACCACTTAACCATCGATACGACATCGAAACGGGGGAGCAACACCTGCCCAATTCNGTTCGGCAACCAAGATCCGAAAGAACTTGCTGTACGCCCACCAGGGTACCNGAAGTTGGGTTGGCCCGCATNTACGATTAACGTGCCCTGTTACACCAGAATTCCGAACACCCCCTTTTAACCAAAGGGGCACGGGCACGTTGTNCTCGTTCCATGTTCACAACTGNGAACACATTCCCTTTGNNAAGGAACCTGGGGGGCCAAAAAACATNACTGGGNTTCCCAACNACAAATGNCCTTTGACCCTTGGTTAACACACTGGTANAGGAGGANCCATGNAAAANACATGGGGATGCCCCACCCCGGAGCTGAACCTTTGGGACGTTGGGCCTNATGGCTTGGANTTCTGACGACCTGGGATGATTTCAATCAGCNCGCCGAACCANGGATANATTGGTTGGGACCCANACATTACCGCGGCACACAAACGANAACCAACCACGGCCNGGCCCTCATTTNACCTTT] consensusID : consensus_6631#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGGGGAGCAAGCACCGCCAATTCGTCGCCAACCACTCCGAAAGAACTGCTGTCGCCACAGGTACGAAGTGGTGCCGCTTCGATACGGCCGTCACAGATTCGAACCCTTACCAAGGCGGGCAGTGTCGTCAGTCACACGGACATCCTGGAGACGGCCAAACCGGTCAACAAGCTGCCTGTAACGTTGGTCGAACCGGCCCCCGTACTGACTGCTGCTGCTGCCGTATCACCCCCACCGAAGGTGCCCATCGCCAACAACACGGCGCCTCTTCCTTCATCATCACCCGCCAAAGTGGAGCGTACTCCGTTGTTTGAGAAGGCTAACAAAGAGCCACCGAAAAGTTCATTGAATCGGTGGGCTGACAGTAGTAGTAGTAGTGGCAATAGTTCAGTTTCCGGCGGTACAGCACGCAAACTGTTGCTCACACACGGACGACCCAACTTTACGATCAAACGATCCAACTCACGGCAAGGGTTCGATGTGGATGTGGCAGATTCGAAAACCGATTCCGCTAAGCCGGTCTTTCGCATTCTAACAGACTTGGAGAAGATGGAACAGCAGGCAGATGAGGGTAACCAAACCGTAGTGACCGGTCCATCGCAACAAGCGTACGTTTCCTTTGCGAAGGATCTTGCGAACGCGCCAAACAACCATCCGGATGTAGTAGTG] [+] EMBL BM622337 [CCGCCCACGCGTCCGCCCACGCGTCCGGGGGGAGCAAGCACCGCCAATTCGTCGCCAACCACTCCGAAAGAACTGCTGTCGCCACAGGTACGAAGTGGTGCCGCTTCGATACGGCCGTCACAGATTCGAACCCTTACCAAGGCGGGCAGTGTCGTCAGTCACACGGACATCCTGGAGACGGCCAAACCGGTCAACAAGCTGCCTGTAACGTTGGTCGAACCGGCCCCCGTACTGACTGCTGCTGCTGCCGTATCACCCCCACCGAAGGTGCCCATCGCCAACAACACGGCGCCTCTTCCTTCATCATCACCCGCCAAAGTGGAGCGTACTCCGTTGTTTGAGAAGGCTAACAAAGAGCCACCGAAAAGTTCATTGAATCGGTGGGCTGACAGTAGTAGTAGTAGTGGCAATAGTTCAGTTTCCGGCGGTACAGCACGCAAACTGTTGCTCACACACGGACGACCCAACTTTACGATCAAACGATCCAACTCACGGCAAGGGTTCGATGTGGATGTGGCAGATTCGAAAACCGATTCCGCTAAGCCGGTCTTTCGCATTCTAACAGACTTGGAGAAGATGGAACAGCAGGCAGATGAGGGTAACCAAACCGTAGTGACCGGTCCATCGCAACAAGCGTACGTTTCCTTTGCGAAGGATCTTGCGAACGCGCCAAACAACCATCCGGATGTAGTAGTG] [+] EMBL BX609824 [ ACGTTGGTCGAACCGGCCCCCGTACTGACTGCTGGTGCTGTCGTATCACCCCCACCGAAGGTGCCCATCGCCAACAACACGGCGCCTCTTCCTTCATCATCACCCGCCAAAGTGGAGCGTACTCCGTTGTTTGAGAAGGCTAACAAAGAGCCACCGAAAAGTTCATTGAATCGGTGGGCTGACAGTAGTAGTAGTAGTGGCAATAGTTCAGTTTCCGGCGTTACAGCACGCAAACTGTTGCTCACTCACGGACGACCCAACTTTACGATCAAACGATCCAACTCACGGCAAGGGTTCGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6631#0 AAGAGCAACAAAGTCCAACACCAGTTCCGGTCGGTAAAGTGATCTCAAACGGGTCTTCTA 60 consensus_6631#2 ------------------------------------------------------------ consensus_6631#1 ------------------------------------------------------------ consensus_6631#0 CTGNGGCTAGTCCACAAGGTTCTCTCTTAACAGCCAGCGTAACGTCTAAAGCTGGTGCTA 120 consensus_6631#2 ------------------------------------------------------------ consensus_6631#1 ------------------------------------------------------------ consensus_6631#0 GTCAAACGGATTCGCCGATAAAGGTAACTCCTGGACGTATTAATNTGGCACCGTCTAGTC 180 consensus_6631#2 ------------------------------------------------------------ consensus_6631#1 ------------------------------------------------------------ consensus_6631#0 CTGCAAAGCTGNCAAATGGAAGTATTCCGACGGGTAGTTCTGTGTCGAACGGAANTGCAT 240 consensus_6631#2 ------------------------------------------------------------ consensus_6631#1 ------------------------------------------------------------ consensus_6631#0 TCAAAATTAACAGCTTCCAACCGAAATCACCTCCAACAAGCTCTACAAATCAAGATCCAG 300 consensus_6631#2 ------------------------------------------------------------ consensus_6631#1 ------------------------------------------------------------ consensus_6631#0 CTAAGATAACGAACGGAAATTCCTACTCAAACACACTTCCAAGGGCAAATGGAGTATCGG 360 consensus_6631#2 ------------------------------------------------------------ consensus_6631#1 ------------------------------------------------------------ consensus_6631#0 CTTCGAAGGCCACTCCCAAAACATCGACCGGAGCCATTCCGACTACGTACACNTAGCACC 420 consensus_6631#2 ------------------------------------------------------------ consensus_6631#1 ------------------------------------------------------------ consensus_6631#0 GTAAAAGTGTCCATCGGAAGTTTTGGAGATAGTTTGCGNGGAGCCAGCGGTAATCCAAAT 480 consensus_6631#2 ------------------------------------------------------------ consensus_6631#1 ------------------------------------------------------CNGANG 6 consensus_6631#0 GCGGGACTACGAAACGGCAATCCTACCAAGTCCTACGAACCACTTAC-CA-TCGATACGA 538 consensus_6631#2 ---------------------------------------CCGCCCACGCG-TCCGCCC-A 19 consensus_6631#1 CAGAATCCCTGNGGTTATTACAGCTTCCAACCGAAATCACCTCCAACAAGCTCTACAAAT 66 ** * ** ** consensus_6631#0 CATCGAACGGGGGGAGCAAGCACCGCCANATTC-GTCGCCAAC-CACTCCGAAAGAACTG 596 consensus_6631#2 CG-CGTCCGGGGGGAGCAAGCACCGCCAA-TTC-GTCGCCAAC-CACTCCGAAAGAACTG 75 consensus_6631#1 CAAGATCCAGCTAAGATAACGAACGGAAATTCCTACTACAAACACACTTCCAAGGTGCAA 126 * * * ** * ** * * * * *** **** * ** * * consensus_6631#0 CTGTCGC-CACAGGNTACGAAGTGGTGCTGCTTCGATA-CGGCCGTCACAGATTCGAACC 654 consensus_6631#2 CTGTCGC-CACAGGT-ACGAAGTGGTGCCGCTTCGATA-CGGCCGTCACAGATTCGAACC 132 consensus_6631#1 ATGGAGTATACGGCTTACGAAGTGCCACTCCCAAAACATCGACCGGAGCCATTCCGACTA 186 ** * ** * ******** * * * * ** *** * * *** consensus_6631#0 CTTACCAAGGCGGGCAGTGTCGTCAGTCACACGGACATCCTGGAGACGGCCAAACCG-GT 713 consensus_6631#2 CTTACCAAGGCGGGCAGTGTCGTCAGTCACACGGACATCCTGGAGACGGCCAAACCG-GT 191 consensus_6631#1 CGTACACTAGCACGTAAAAGTGTCCATC----GGAAGTTTTGGAGATAGTTGCGTGGAGC 242 * *** ** * * *** ** *** * ****** * * * consensus_6631#0 CAACAAGCTGCCTGTAACGTTGGTC---GAACCGGCCCCCGTACTGACTGCTGCTGCTGC 770 consensus_6631#2 CAACAAGCTGCCTGTAACGTTGGTC---GAACCGGCCCCCGTACTGACTGCTGCTGCTGC 248 consensus_6631#1 CAGCTGGTTAATCCAAATGCGGGACTACGAAACGGAATCC-TACCAAGTCCTACGA--AC 299 ** * * * ** * ** * *** *** ** *** * * ** * * consensus_6631#0 CGTATCACCCCCACCGAAGGTGCCCATCGCCAACAACACGGCGCCTCTTCCTTCATCATC 830 consensus_6631#2 CGTATCACCCCCACCGAAGGTGCCCATCGCCAACAACACGGCGCCTCTTCCTTCATCATC 308 consensus_6631#1 CACTTAACC---ATCGATACGACATCGAAACGGGGGAGCAACACCTGCCCAATTCNGTTC 356 * * *** * *** * * * * *** * * ** consensus_6631#0 ACCCGCCAAAGTGGAGCGTACTCCGTTGTTTG---AGAAGGCTAACAAAGAGCCA-CCGA 886 consensus_6631#2 ACCCGCCAAAGTGGAGCGTACTCCGTTGTTTG---AGAAGGCTAACAAAGAGCCA-CCGA 364 consensus_6631#1 GGCAACCAAGATCCGAAAGAACTTGCTGTACGCCCACCAGGGTACCNGAAGTTGGGTTGG 416 * **** * * * *** * * *** ** * * * consensus_6631#0 AAAGTTCATTGAATCGGTGGGCTGACAGTAGTAGTAGTAGTGGCAATAGTTCAGTTTCCG 946 consensus_6631#2 AAAGTTCATTGAATCGGTGGGCTGACAGTAGTAGTAGTAGTGGCAATAGTTCAGTTTCCG 424 consensus_6631#1 CCCGCATNTACGATTAACGTGCC--CTGTTACACCAG-AATTCCGAACACCCCCTTTTAA 473 * * ** * ** * ** * ** * * * * * *** consensus_6631#0 GCGGTACAGCACGCAAACTGTTGCTCACACACGGACGACCCAACTTTACGATCAAACGAT 1006 consensus_6631#2 GCGGTACAGCACGCAAACTGTTGCTCACACACGGACGACCCAACTTTACGATCAAACGAT 484 consensus_6631#1 CCAAAGGGGCACGGGCAC-GTTGTNCTCGTTCCATGTTCACAACTGNGAACACATTCCCT 532 * ***** ** **** * * * * ***** ** * * consensus_6631#0 CCAACTCACGGC--AAGGGNTCGATGTGGATG--TGGCAGATTCGAAAACCGAT------ 1056 consensus_6631#2 CCAACTCACGGC--AAGGGTTCGATGTGGATG--TGGCAGATTCGAAAACCGATTCCGCT 540 consensus_6631#1 TTGNNAAGGAACCTGGGGGGCCAAAAAACATNACTGGGNTTCCCAACNACAAATGNCCTT 592 * *** * * ** *** * * ** ** consensus_6631#0 ------------------------------------------------------------ consensus_6631#2 AAGCCGGTCTTTCGCATTCTAACAGACTTGGAGAAGATGGAACAGCAGGCAGATGAGGGT 600 consensus_6631#1 TGACCCTTGGTTAACACACTGGTANAGGAGGANCCATGNAAAANACATGGGGATGCCCCA 652 consensus_6631#0 ------------------------------------------------------------ consensus_6631#2 AACCAAACCGTAGTGACCGGTCCATCGCAACAA---GCGTACGTTTCCTTTG-CGAAGGA 656 consensus_6631#1 CCCCGGAGCTGAACCTTTGGGACGTTGGGCCTNATGGCTTGGANTTCTGACGACCTGGGA 712 consensus_6631#0 ------------------------------------------------------------ consensus_6631#2 TCTTGCGAACGCGCCAAACAACCATCCGGATGTAGTAGTG-------------------- 696 consensus_6631#1 TGATTTCAATCAGCNCGCCGAAC-CANGGATANATTGGTTGGGACCCANACATTACCGCG 771 consensus_6631#0 ---------------------------------------------- consensus_6631#2 ---------------------------------------------- consensus_6631#1 GCACACAAACGANAACCAACCACGGCCNGGCCCTCATTTNACCTTT 817 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||