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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1126 fasta sequence
[CCACCCCGAGAGGACGATGATAGCGAGGATGATGATGATGACGATGCCGGAGACAACTACGATGACGATGATGATGGTGAGGACGAATCGGACGGAGAGGATTACGAAGAGTCCTCGGACGAAGACGGAGAATCATCATCAGCGCGCACGGCAAGAAGCAAGCAGCAAGCATCCAAGCAACCGGAGCTCACCCTGCTCAAGGAAGAAAACCGCCAGGAAGCAATAAACAAAGGTTTAGCGGTCCAGAATCAGCTGAAAATATG-GGAACGCTTGCTGGAAATGCGCATCAAGGTGCAGCCCTGCTTGCTCGCTTCGAACGGTCTGCCACCGCCGGAAGCGTGCGAAAAGCTGCGCTCACAAAATGAAGAATTTCGAGACAAGGCACAGCAAGCGGTAGCGACCGTAACGGAAGCAATGGATCGAATGCTCGAGCTGCAGGAACTTCTGAT-GGGTCGATTCGCTGAGACGAAGGATCTGCTTAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATCGCACTGGACGGATACGAAGCGATGCTTGCT-GGCAGGTGCAA-GGAT-AT-GGAGGAGTATCGGAACAGTGTGCTGATGAA-GTGGCACGATCGGACAACGATCGCAT-CCAAGATGCGAAGTAACCCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAGCTGGTGC-GTAAGACGCAACTGTACCGTGGCGGTTATACGCTGCTCGGGCGGGAGGTTCCATCGGAGGCAGCGGGTCCAACACAACCCACCGATCGGGAGGATGGCCGGGATGCAGGGGAAGAACAAACACCGTCCTCGGTTTATGATGGGGAAATTTTCGACGATTCGGACTTTTACCACCAGATGCTGCGGGAATTGATTGAGTACAAAACCAGCACCACGGACAGTCCGCAGGAAATTGCCAGCAAGCTGGCGGAGCTGCAGAAACTTCGCAACAAGATGAAGAAAACGGTCGACACGAAAGCGTCCAAGGGTCGGAAAATACGATATGTGGTACACAAAAAGCTGGTTAACTTCATGGCCCCGGTTCCCGACTACGAATGGACGGATGAGGCAAAAGATGAGCTAT]
[+] EMBL BX623558 [CCACCCCGAGAGGACGATGATAGCGAGGATGATGATGATGACGATGCCGGAGACAACTACGATGACGATGATGATGGTGAGGACGAATCGGACGGAGAGGATTACGAAGAGTCCTCGGACGAAGACGGAGAATCATCATCAGCGCGCACGGCAAGAAGCAAGCAGCAAGCATCCAAGCAACCGGAGCTCACCCTGCTCAAGGAAGAAAACCGCCAGGAAGCAATAAACAAAGGTTTAGCGGTCCAGAATCAGCTGAAAATATG GGAACGCTTGCTGGAAATGCGCATCAAGGTGCAGCCCTGCTTGCTCGCTTCGAACGGTCTGCCACCGCCGGAAGCGTGCGAAAAGCTGCGCTCACAAAATGAAGAATTTCGAGACAAGGCACAGCAAGCGGTAGCGACCGTAACGGAAGCAATGGATCGAATGCTCGAGCTGCAGGAACTTCTGAT GGGTCGATTCGCTGAGACGAAGGATCTGCTTAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATCGCACTGGACGGATACGAAGCGATGCTTGCT GGCAGGTGCAA GGAT AT GGAGGAGTATCGGAACAGTGTGCTGATGAA GTGGCACGATCGGACAACGATCGCAT CCAAGAT ]
[+] EMBL AL695746 [ tTGCCCCAGGATTAAAA CGCCAGGAAGCAATAAACAAAGGTTTAGCGGTCCAGAATCAGCTGAAAATATGTGGAACGCTTGCTGGAAATGCGCATCAAGGTGCAGCCCTGCTTGCTCGCATCGAACGGTCTGCCACCGCCGGAAGCGTGCGAAAAGTTGCGCTCACAAAATGAAGAATTTCGAGACAAGGCACAGCAAGCGGTAGCGACCGTAACGGAAGCAATGGATCGAATGCTCGAACTGCAGGAACTTCTGATGGGGTCGGTTCGCTGAGACGAAGGATCTGCTCAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATCGCACTGGACGGATACGAAGCGATGCTTGCTGGGCAGGTGCAACGGATNNTGGGAGGAGTATCGGAACAGTGTGCTGATGAAGGTGGCACGATCGGACAACGATCGCATCCCAAGATGCGAAGTAACCCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAGCTGGTGCTGTAAG ]
[+] EMBL BX628111 [ ACGGATCGCACTGGACGGATACGAAGCGATGCTTGCT GGCAGGTGCAA GGAT AT GGAGGAGTATCGGAACAGTGTGCTGATGAA GTGGCACGATCGGACAACGATCGCAT CCAAGATGCGAAGCAACCCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAGCTGGTGC GTAAGACGCAACTGTACCGTGGCGGTTATACGCTGCTCGGGCGGGAGGTTCCATCGGAGGCAGCGGGTCCAACACAACCCACCGATCGGGAGGATGGCCGGGATGCAGGGGAAGAACAAACACCGTCCTCGGTTTATGATGGGGAAATTTTCGACGATTCGGACTTTTACCACCAGATGCTGCGGGAATTGATTGAGTACAAAACCAGCACCACGGACAGTCCGCAGGAAATTGCCAGCAAGCTGGCGGAGCTGCAGAAACTTCGCAACAAGATGAAGAAAACGGTCGACACGAAAGCGTCCAAGGGTCGGAAAATACGATATGTGGTACACAAAAAGCTGGTTAACTTCATGGCCCCGGTTCCCGACTACGAATGGACGGATGAGGCAAAAGATGAGCTAT]
consensusID : consensus_6640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence
[GCCAGAATCGGCACGNNGGAGCGGTAGCGACCGTAACGGAACGCAATGGATCGAATGCTCGAGCTGCAGGAACTTCTGATGGGTCGATTCGCTGAGACGAAGGATCTGCTTAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATCGCACTGGACGGATACGAAGCGATGCTTGCTGGCAGGTGCAAGGATATGGAGGAGTATCGGAACAGTGTGCTGATGAAGTGGCACGATCGGACAACGATCGCATCCAAGATGCGAAGCAACCCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAGCTGGTGCGTAAGACGCAACTGTACCGTGGCGGTTATACGCTGCTCGGGCGGGAGGTTCCATCGGATNCAGCGGGTCCAACACAACCACCGATCGGGAGGATGGCCGGGATGCAGGGGAAGAACAAACACCGTCCTCGGTTTATGATGGGGGAAATTTTCGACGATTCGGACTTTTACCACCAGATGCTGCGGGGAATTGATTGAGTACAAGAACCAAGCAACCACCGGACAGTTCCGCAGGAAATTGCCAGGCAAATGCNTNGGCCGGAGCTTGCAGAAAAACTTCGGCAACACGGATGAAGGAAGAACGGGTCGAACACCGAAAANGCGTTCCCACGGGGGTCGGNAAAAATACGACTATGTCGGTACACACAGAAAAGGCTGGGTNAACTTTCATGGCCCCCGG]
[+] EMBL BX468123 [GCCAGAATCGGCACGNNGGAGCGGTAGCGACCGTAACGGAACGCAATGGATCGAATGCTCGAGCTGCAGGAACTTCTGATGGGTCGATTCGCTGAGACGAAGGATCTGCTTAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATCGCACTGGACGGATACGAAGCGATGCTTGCTGGCAGGTGCAAGGATATGGAGGAGTATCGGAACAGTGTGCTGATGAAGTGGCACGATCGGACAACGATCGCATCCAAGATGCGAAGCAACCCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAGCTGGTGCGTAAGACGCAACTGTACCGTGGCGGTTATACGCTGCTCGGGCGGGAGGTTCCATCGGATNCAGCGGGTCCAACACAACCACCGATCGGGAGGATGGCCGGGATGCAGGGGAAGAACAAACACCGTCCTCGGTTTATGATGGGGGAAATTTTCGACGATTCGGACTTTTACCACCAGATGCTGCGGGGAATTGATTGAGTACAAGAACCAAGCAACCACCGGACAGTTCCGCAGGAAATTGCCAGGCAAATGCNTNGGCCGGAGCTTGCAGAAAAACTTCGGCAACACGGATGAAGGAAGAACGGGTCGAACACCGAAAANGCGTTCCCACGGGGGTCGGNAAAAATACGACTATGTCGGTACACACAGAAAAGGCTGGGTNAACTTTCATGGCCCCCGG]
consensusID : consensus_6640#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence
[ATCGCCCGAGGNTATCGGAAAANCAACTAAATCACTTGTGCTACTAAAGCCACCCGCAGAGGACGATGATAGCGAGGATGATGATGATGACGATGCCTGGAGACAACTACGATGACGATTATGATGGTGAGGACGAATCGGACGTGAGAGGATTACGAAGAGTCCTCGGACGAAGACGGAGAATCATCATACTANGCTGACACGGTGAAGAANNCAATGCCAGCAAGCATCCAATACAATCCGGAGCTCACCCTGTCTCAAGGAAGAAAACCGTCAGGAAGCNATAAAGCAAAGGTTTAGCGGTCCAGAATCAGCTGAAAATATGGAATCGCTTGCTGGAAATGCGCATTCATGGTGCAGCCCTGCTTGCTCGCTTCGAACGGTCTTGCCACCGCGGA]
[+] EMBL AL932884 [ATCGCCCGAGGNTATCGGAAAANCAACTAAATCACTTGTGCTACTAAAGCCACCCGCAGAGGACGATGATAGCGAGGATGATGATGATGACGATGCCTGGAGACAACTACGATGACGATTATGATGGTGAGGACGAATCGGACGTGAGAGGATTACGAAGAGTCCTCGGACGAAGACGGAGAATCATCATACTANGCTGACACGGTGAAGAANNCAATGCCAGCAAGCATCCAATACAATCCGGAGCTCACCCTGTCTCAAGGAAGAAAACCGTCAGGAAGCNATAAAGCAAAGGTTTAGCGGTCCAGAATCAGCTGAAAATATGGAATCGCTTGCTGGAAATGCGCATTCATGGTGCAGCCCTGCTTGCTCGCTTCGAACGGTCTTGCCACCGCGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6640#0 CCACCCCGAGAGGACGATGATAGCGAGGATGATGATGATGACGATGCCGGAGACAACTAC 60
consensus_6640#1 ------------------------------------------------------------
consensus_6640#2 ------------------------------------------------------------
consensus_6640#0 GATGACGATGATGATGGTGAGGACGAATCGGACGGAGAGGATTACGAAGAGTCCTCGGAC 120
consensus_6640#1 ------------------------------------------------------------
consensus_6640#2 ------------------------------------------------------------
consensus_6640#0 GAAGACGGAGAATCATCATCAGCGCGCACGGCAAGAAGCAAGCAGCAAGCATCCAAGCAA 180
consensus_6640#1 ------------------------------------------------------------
consensus_6640#2 ------------------------------------------------------------
consensus_6640#0 CCGGAGCTCACCCTGCTCAAGGAAGAAAACCGCCAGGAAGCAATAAACAAAGGTTTAGCG 240
consensus_6640#1 ------------------------------------------------------------
consensus_6640#2 ------------------------------------------------------------
consensus_6640#0 GTCCAGAATCAGCTGAAAATATGGGAACGCTTGCTGGAAATGCGCATCAAGGTGCAGCCC 300
consensus_6640#1 ------------------------------------------------------------
consensus_6640#2 ------------------------------------------------------------
consensus_6640#0 TGCTTGCTCGCTTCGAACGGTCTGCCACCGCCGGAAGCGTGCGAAAAGCTGCGCTCACAA 360
consensus_6640#1 ------------------------------------------------------------
consensus_6640#2 ------------------------------------------------------------
consensus_6640#0 AATGAAGAATTTCGAGACAAGGCACAGCA-AGCGGTAGCGACCGTAACGGAA-GCAATGG 418
consensus_6640#1 -----------GCCAGAATCGGCACGNNGGAGCGGTAGCGACCGTAACGGAACGCAATGG 49
consensus_6640#2 ------------------------------ATCGCC--CGAGGNTATCGGAA---AANCA 25
* ** *** ** ***** **
consensus_6640#0 ATCGAAT-GCTCGAGCTGCAGGAACTTCTGATGGGTCGATTCGCTGAGACGAAGGATCTG 477
consensus_6640#1 ATCGAAT-GCTCGAGCTGCAGGAACTTCTGATGGGTCGATTCGCTGAGACGAAGGATCTG 108
consensus_6640#2 ACTAAATCACTTGTGCTACTAAAGCCACCCGCAGAGGACGATGATAGCGAGGATGATGAT 85
* *** ** * *** * * * * * * * * * ***
consensus_6640#0 CTTAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATC 537
consensus_6640#1 CTTAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATC 168
consensus_6640#2 GATGACGATGCCTGGAGACA-ACTACGATGACGATTATGATGGTGAGGACGAATCGGA-- 142
* * ** * * ** *** * * * * * **** ****
consensus_6640#0 GCACTGGACGGATACGAAGCGATGCTTGCTGGCAGGTGCAAGGATATGGAGGAGTATCGG 597
consensus_6640#1 GCACTGGACGGATACGAAGCGATGCTTGCTGGCAGGTGCAAGGATATGGAGGAGTATCGG 228
consensus_6640#2 -CGTGAGAGGATTACGAAG-AGTCCTCGG----------ACGAAGACGGAGAATCATC-- 188
* ** * ******* * ** * * * * * **** * ***
consensus_6640#0 AACAGTGTGCTGATGAAGTGGCACGATCGGACAACGATCGCATCCAAGATGCGAAGTAAC 657
consensus_6640#1 AACAGTGTGCTGATGAAGTGGCACGATCGGACAACGATCGCATCCAAGATGCGAAGCAAC 288
consensus_6640#2 -ATACTANGCTGACACGGTGA-------AGAANNCAATGCCAGCAAGCATCCAATACAAT 240
* * * ***** *** ** * ** ** * * ** * * **
consensus_6640#0 CCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAG 717
consensus_6640#1 CCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAG 348
consensus_6640#2 CCGGAGCTCACCCTGTCT-CAAGGAAGAAAACCGTCAGGAAGCN-ATAAAGCA--AAGGT 296
** ** * * *** ******** ** * * ** ** * * *
consensus_6640#0 CTGGTGCGTAAGACGCAACTGTACCGTGGCGGTTATACGCTGCTCGGGCGGGAGGTTCCA 777
consensus_6640#1 CTGGTGCGTAAGACGCAACTGTACCGTGGCGGTTATACGCTGCTCGGGCGGGAGGTTCCA 408
consensus_6640#2 TTAGCGGTCCAGAATCAGCTGAAAATATGGAATCGCTTGCTG----GAAATGCGCATTCA 352
* * * *** ** *** * * * **** * * * * **
consensus_6640#0 TCGGAGGCAGCGGGTCCAACACAACCCACCGATCGGGAGGATGGCCGGGATGCAGGGGAA 837
consensus_6640#1 TCGGATNCAGCGGGTCCAACACAACC-ACCGATCGGGAGGATGGCCGGGATGCAGGGGAA 467
consensus_6640#2 T--GGTGCAGCCCTGCTTGCTCGCTT---CGAACGGTCTTGCCACCGCGGA--------- 398
* * **** * * * *** *** *** *
consensus_6640#0 GAACAAACACCGTCCTCGGTTTATGATGGGG-AAATTTTCGACGATTCGGACTTTTACCA 896
consensus_6640#1 GAACAAACACCGTCCTCGGTTTATGATGGGGGAAATTTTCGACGATTCGGACTTTTACCA 527
consensus_6640#2 ------------------------------------------------------------
consensus_6640#0 CCAGATGCTGCGGG-AATTGATTGAGTACAA-AACCAGC--ACCAC-GGACAGT-CCGCA 950
consensus_6640#1 CCAGATGCTGCGGGGAATTGATTGAGTACAAGAACCAAGCAACCACCGGACAGTTCCGCA 587
consensus_6640#2 ------------------------------------------------------------
consensus_6640#0 GGAAATTGCCAG-CAAG---CTGG--CGGAGCT-GCAGAAA--CTTCG-CAACA-AGATG 999
consensus_6640#1 GGAAATTGCCAGGCAAATGCNTNGGCCGGAGCTTGCAGAAAAACTTCGGCAACACGGATG 647
consensus_6640#2 ------------------------------------------------------------
consensus_6640#0 AAGAAAAC---GGTCGA----CACGAAAGCGTCC----AAGGGTCGGAAAA--TACGA-T 1045
consensus_6640#1 AAGGAAGAACGGGTCGAACACCGAAAANGCGTTCCCACGGGGGTCGGNAAAAATACGACT 707
consensus_6640#2 ------------------------------------------------------------
consensus_6640#0 ATGT-GGTACACAAAAAGCTGGTTAACTTCATGGCCCCGGTTCCCGACTACGAATGGACG 1104
consensus_6640#1 ATGTCGGTACACACAGAAAAGGCTGGGTNAACTTTCATGGCCCCCGG------------- 754
consensus_6640#2 ------------------------------------------------------------
consensus_6640#0 GATGAGGCAAAAGATGAGCTAT 1126
consensus_6640#1 ----------------------
consensus_6640#2 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||