These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1055 fasta sequence [CCGGGCAGGCTACAGCTTCCAGGACTGTCCAGTCTATCCCGGCTGCAACTACTCACTGCTCAGCTGTCGCTACATGGAGTTCCTGAAGAATAGGAGCGTAGTATTGGAGCTCTTTTCTTCCGAAAGTGACGCGTTACAGCAAGTCAGCAGGGGCAACGCATGGGGCGCACTGGTGTTTGCTTCCAACTACTCCGACTCGCTAGTGGAGCGTACCGAACGAGGTCGCGATGTAGACGATTTCACCATAGACTCAGCCAATCTGGCCGTGACGATGGATATGTCAAATCAACAAATAGGAACGCTTCTGTACCGAGACATCCAGTATGCCTACTTTGACTTTATCGAAAACATACTGATCGACTGTGAGGTGAACCCGTCGAACGGGCGCATACCCTTCCAGTGGAACAAACCCGTGTACGGCGATCGGAAGCCGAACTTTACCGACTTTGCGGCGCCCGGTGTCATTCTCACCATCATTTTCTTCCTCTCCGTTGCGCTTACCTCCGGCGCCATGCTGATCGAGCGCAACGAAGGCATTCTCGAGCGTTGCCTCGTGTCCGGCATTACCGGTATAGAAATACTGTTCTCCCATGTCACCACCCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGTGTTCAACCTTACGAATCGGGGCGACATCGTGTGGGTGATCCTGCTCACCATCCTGACCGGGCTGTGTGGCATGTGTTTCGGATTCGTCGTATCGTGCTCCTGTGATAACGAGCGCTCCGCCACGTACATGGCGATGGGCAGCTTCCTGCCGATCGTCATGCTGTGCGGCATCATCTGGCCGATCGAGGGCATGCATCCGCTGGTGCGCGTGTTTTCCGTCTTTCTACCGCTCACCAAATCGACCGAATCGCTGCGCTCCATACTGCAGCGCGGCTGGCTGATCGAGGACCCGAACGTGTACATCGGTTTCGCCTCCACTGCCATCTGGATCGTGATCTTCCTTACCATTAGTATACTGTTGCTCAAGTTCAAGAANGGATAAGCTGCGCCGCTTGCGC] [+] EMBL BM633453 [CCGGGCAGGCTACAGCTTCCAGGACTGTCCAGTCTATCCCGGCTGCAACTACTCACTGCTCAGCTGTCGCTACATGGAGTTCCTGAAGAATAGGAGCGTAGTATTGGAGCTCTTTTCTTCCGAAAGTGACGCGTTACAGCAAGTCAGCAGGGGCAACGCATGGGGCGCACTGGTGTTTGCTTCCAACTACTCCGACTCGCTAGTGGAGCGTACCGAACGAGGTCGCGATGTAGACGATTTCACCATAGACTCAGCCAATCTGGCCGTGACGATGGATATGTCAAATCAACAAATAGGAACGCTTCTGTACCGAGACATCCAGTATGCCTACTTTGACTTTATCGAAAACATACTGATCGACTGTGAGGTGAACCCATCGAACGGGCGCATACCCTTCCAGTGGAACAAACCCGTGTACGGCGATCGGAAGCCGAACTTTACCGACTTTGCGGCGCCCGGTGTCATTCTCACCATCATTTTCTTCCTCTCCGTAGCGCTTACCTCCGGCGCCATGCTGATCGAGCGCAACGAAGGCATTCTCGAGCGTTGCCTCGTGTCCGGCATTACCGGTATAGAAATACTGTTCTCCCATGTCACCACCCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGTGTTCAACCTTACGAATCGGGG ] [+] EMBL BX621864 [ GATGGATATGTCAAATCAACAAATAGGAACGCTTCTGTACCGAGACATCCAGTATGCCTACTTTGACTTTATCGAAAACATACTGATCGACTGTGAGGTGAACCCGTCGAACGGGCGCATACCCTTCCAGTGGAACAAACCCGTGTACGGCGATCGGAAGCCGAACTTTACCGACTTTGCGGCGCCCGGTGTCATTCTCACCATCATTTTCTTCCTCTCCGTTGCGCTTACCTCCGGCGCCATGCTGATCGAGCGCAACGAAGGCATTCTCGAGCGTTGCCTCGTGTCCGGCATTACCGGTATAGAAATACTGTTCTCCCATGTCACCACCCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGTGTTCAACCTTACGAATCGGGGCGACATCGTGTGGGTGATCCTGCTCACCATCCTGACCGGGCTGTGTGGCATGTGTTTCGGATTCGTCGTATCGTGCTCCTGTGATAACGAGCGCTCCGCCACGTACATGGCGATGGGCAGCTTCCTGCCGATCGTCATGCTGTGCGGCATCATCTGGCCGATCGAGGGCATGCATCCGCTGGTGCGCGTGTTTTCCGTCTTTCTACCGCTCACCAAATCGACCGAATCGCTGCGCTCCATACTGCAGCGCGGCTGGCTGATCGAGGACCCGAACGTGTACATCGGTTTCGCCTCCACTGCCATCTGGATCGTGATCTTCCTTACCATTAGTATACTGTTGCTCAAGTTCAAGAANGGATAAGCTGCGCCGCTTGCGC] [+] EMBL BX616498 [ GATATGTCAAATCAACAAATAGGAACGCTTCTGTACCGAGACATCCAGTATGCCTACTTTGACTTTATCGAAAACATACTGATCGACTGTGAGGTGAACCCGTCGAACGGGCGCATACCCTTCCAGTGGAACAAACCCGTGTACGGCGATCGGAAGCCGAACTTTACCGACTTTGCGGCGCCCGGTGTCATTCTCACCATCATTTTCTTCCTCTCCGTTGCGCTTACCTCCGGCGCCATGCTGATCGAGCGCAACGAAGGCATTCTCGAGCGTTGCCTCGTGTCCGGCATTACCGGTATAGAAATACTGTTCTCCCATGTCACCACCCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGTGTTCAACCTTACGAATCGGGGCGACATCGTGTGGGTGATCCTGCTCACCATCCTGACCGGGCTGTGTGGCATGTGTTTCGGATTCGTCGTATCGTGCTCCTGTGATAACGAGCGCTCCGCCACGTACATGGCGATGGGCAGCTTCCTGCCGATCGTCATGCTGTGCGGCATCATCTGGCCGATCGAGGGCATGCATCCGCTGGTGCGCGTGTTTTCCGTCTTTCTACCGCTCACCAAATCGACCGAATCGCTGCGCTCCATACTGCAGCGCGG ] [+] EMBL BM590830 [ ccGATCGAGCGCAACGAAGGCATTCTCGAGCGTTGCCTCGTGTCCGGCATCACCGGTATAGAAATACTGTTCTCCCATGTCACCACCCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGTGTTCAACCTTACGAATCGGGGCGACATCGTGTGGGTGATCCTGCTCACCATCCTGACCGGGCTGTGTGGCATGTGTTTCGGATTCGTCGTATCGTGCTCCTGTGATAACGAGCGCTCCGCCACGTACATGGCGATGGGCAGCTTCCTGCCGATCGTCATGCTGTGCGGCATCATCTGGCCGATCGAGGGCATGCATCCGCTGGTGCGCGTGTTTTCCGTCTTTCTACCGCTCACCAAATCGACCGAATCGCTGCGCTCCATACTGCAGCGCGGCTGGCTGATCGAGGACCCGAACGTGTACATCGGTTTCGCCTCCACTGCCATCTGGATCGTGATCTTCCTTACCATTAGTATACTGCTGCTCAAGTTCAAGAAGGGATAAGCTGCGCCGCTTGCG ] consensusID : consensus_6641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CCGGTGACGACGCACTACATCGAGGAGACGCGCCAGGCGCACGTGATCGGGCTGATGCGCGGCGGCAAGTTTCTGGCCGAGGAGTCGCCGGCCGACCTGCTCGCCCAGTACCAGGCGGAATCGCTCGAGGACGTGTTTCTGAAGCTGTCCGTCCTGCAGAACATGGGCAAGCGGAGACGCTCGTCGATCGCGCAGGAGGTGGTGGAGCACGTGCGCATACCGGCCATCAGCAATCCGGCCCTGGACCTGTCGCCCGAGGAGGACCATGGCGAAATATCCGGCGAGTTCGGCGACAACATCTCGATGTCATCGCGCGGACCGGACGCGGTGACGCCGGAAATACAGGCGCCCCCGTTACCGCCGGAGGAGGACACCAAGACGCCGCTCGTCGAGTACTTGAAGTTCATCAAGCCGAACCATATGCGGGCACTGATCTGGAAAAACTTCCTCTGGATGTGGCGTAACGTCGGTGTGATGGCATTCATCATTGGACTGCCGGTAGCACAGATCATTCTGTTCTGCTGGGCGATCGGGCACGAATCCGGTCGGTTTGAAGCTGGCCGTTGCCAACTACTCCGACTCGCTTAGTGGAGCGTACCGAACGAGGTCGCGATGTGGACGATTTCACCATAGACTCAGCCCAATCTGGCCGTGAACGA] [+] EMBL BM582914 [CCGGTGACGACGCACTACATCGAGGAGACGCGCCAGGCGCACGTGATCGGGCTGATGCGCGGCGGCAAGTTTCTGGCCGAGGAGTCGCCGGCCGACCTGCTCGCCCAGTACCAGGCGGAATCGCTCGAGGACGTGTTTCTGAAGCTGTCCGTCCTGCAGAACATGGGCAAGCGGAGACGCTCGTCGATCGCGCAGGAGGTGGTGGAGCACGTGCGCATACCGGCCATCAGCAATCCGGCCCTGGACCTGTCGCCCGAGGAGGACCATGGCGAAATATCCGGCGAGTTCGGCGACAACATCTCGATGTCATCGCGCGGACCGGACGCGGTGACGCCGGAAATACAGGCGCCCCCGTTACCGCCGGAGGAGGACACCAAGACGCCGCTCGTCGAGTACTTGAAGTTCATCAAGCCGAACCATATGCGGGCACTGATCTGGAAAAACTTCCTCTGGATGTGGCGTAACGTCGGTGTGATGGCATTCATCATTGGACTGCCGGTAGCACAGATCATTCTGTTCTGCTGGGCGATCGGGCACGAATCCGGTCGGTTTGAAGCTGGCCGTTGCCAACTACTCCGACTCGCTTAGTGGAGCGTACCGAACGAGGTCGCGATGTGGACGATTTCACCATAGACTCAGCCCAATCTGGCCGTGAACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6641#0 CCGGGCAGGCTACAGCTTCCAGGACTGTCCAGTCTATCCCGGCTGCAACTACTCACTGCT 60 consensus_6641#1 ------------------------------------------------------------ consensus_6641#0 CAGCTGTCGCTACATGGAGTTCCTGAAGAATAGGAGCGTAGTATTGGAGCTCTTTTCTTC 120 consensus_6641#1 ------------------------------------------------------------ consensus_6641#0 CGAAAGTGACGCGTTACAGCAAGTCAGCAGGGGCAACGCATGGGGCGCACTGGTGTTTGC 180 consensus_6641#1 ------------------------------------------------------------ consensus_6641#0 TTCCAACTACTCCGACTCGCTAGTGGAGCGTACCGAACGAGGTCGCGATGTAGACGATTT 240 consensus_6641#1 --------------------------------------------------CCGGTGACGA 10 * ** consensus_6641#0 CACCATAGACTCAGCCAATCTGGCCGTGACGATGGATATGTCAAATCAACAAATAGGAAC 300 consensus_6641#1 CGCACTACATCGAGGAGACGCGCCAGGCGCACGTGATCGGGCTGATGCGCGGC--GGCAA 68 * * ** * ** * * * * * *** * * ** * ** * consensus_6641#0 GCTTCTGTACCGAGACATCCAGTATGCCTACTTTGACTTTATCGAAAACATACTGATCGA 360 consensus_6641#1 GTTTCTG-GCCGAGGAGTC--GCCGGCCGACCT--GCTCGCCCAGTACCAGGCGGAATCG 123 * ***** ***** ** * *** ** * ** * * ** * ** consensus_6641#0 CTGTGAGGTGAACCCGTCGAACGGGCGCATACCCTTCCAGTGGAACAAACCCG--TGTAC 418 consensus_6641#1 CTCGAGGACGTGTTTCTGAAGCTGTC-CGTCCTGCAGAACATGGGCAAGCGGAGACGCTC 182 ** * * * * * * * * * * * * *** * * * consensus_6641#0 GGCGATCGGAAGCCGAACTTTACCGACTTTGCG-GCGCCCGGTGTCATTCTCACCATCAT 477 consensus_6641#1 GTCGATCG--CGCAGGAGGTGGTGGAGCACGTGCGCATACCG-GCCATCAGCAATCCGGC 239 * ****** ** * * * ** * * ** * * * *** ** consensus_6641#0 TTTCTTCCTCTCCGTTGCGCTTACCTCCGGCGCCATGCTGATCGAGCGCAACGAAGGCAT 537 consensus_6641#1 CCTGGACCTGTCGCCCGAGGAGGACCATGGCGAAATATCCGGCGAGTTCGGCGACAACAT 299 * *** ** * * * **** ** **** * *** *** consensus_6641#0 TCTCGAGCGTTGCCTCGTGTCCGGCATTACCGGTATAGAAATACTGTTCTCCCATGTCAC 597 consensus_6641#1 CTCGATGTCATCGCGCGGACCGGACGCGGTGACGCCGGAAATACAGG-CGCCCCCGTTAC 358 * * * ** * * * ******* * * *** ** ** consensus_6641#0 CACCCAGTTCCTGGTGATGTGCTTCCAGACCGCGCTCGTCATGGTGTTTAGCTTCTCCGT 657 consensus_6641#1 CGCC--------GGAGGAGGACACCAAGACGCCGCTCGTCGAGTACTTGAAGTTCATCAA 410 * ** ** * * * * **** ******** * ** * *** * consensus_6641#0 GTTCAACCTTACGAATCGGGGCGACATCGTGTGGGTGATCCTGCTCACCAT--CCTGACC 715 consensus_6641#1 GCCGAACCATATGC----GGGCACTGATCTGGAAAAACTTCCTCTGGATGTGGCGTAACG 466 * **** ** * **** ** * * ** * * * ** consensus_6641#0 GGGCTGTG-TGGCATGTGTT-TCGGATTCGTCGTATCGTGC----TCCTGTGATAACGAG 769 consensus_6641#1 TCGGTGTGATGGCATTCATCATTGGACTGCCGGTAGCACAGATCATTCTGTTCTGCTGGG 526 * **** ****** * * *** * *** * * **** * * * consensus_6641#0 CGCTCCGCCACGTACATGG-CGATGGGCAGCTTCCTGCCGATCGTCATGCTGTGCGGCAT 828 consensus_6641#1 CGATCGGGCACGAATCCGGTCGGTTTGAAGCTGGCCGTTGCCAACTACTCCGACTCGCTT 586 ** ** * **** * ** ** * * **** * * * * * * ** * consensus_6641#0 CATCTGGCCGATCGAGGGCATGCATCCGCTGGTGCGCGTGTTTTCCGTCTTTCTACCGCT 888 consensus_6641#1 AGTGGAGCGTACCGA----ACGAGGTCGC-GATGTGGACGATTTCACCATAGACTCAGC- 640 * ** * *** * * *** * ** * * **** * * ** consensus_6641#0 CACCAAATCGACCG-AATCGCTGCGCTCCATACTGCAGCGCGGCTGGCTGATCGAGGACC 947 consensus_6641#1 --CCAATCTGGCCGTGAACGA--------------------------------------- 659 **** * *** * ** consensus_6641#0 CGAACGTGTACATCGGTTTCGCCTCCACTGCCATCTGGATCGTGATCTTCCTTACCATTA 1007 consensus_6641#1 ------------------------------------------------------------ consensus_6641#0 GTATACTGTTGCTCAAGTTCAAGAANGGATAAGCTGCGCCGCTTGCGC 1055 consensus_6641#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||