These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 780 fasta sequence [CCGCGGACGCGTGGGTCGGAATGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTTTCAAACTAATTGAACTGCTGAACCGTGACCGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGGAGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACACACGGCACCCTGCTGGAGCTGAAGGCCTTGGCGCTGCTTTACAACGCCAATGTACTCCTATTCGAACCGTTCGCCGAGGCTAAGTGGTTCCTGCACAGCGCGGCCAACGATACGGTTTGGCGAGTTTTCTACGGCCGAGACAATCATTTCGATTCAATTTACACCACGGAATACATGATCAATATGGCTGAGTGTCAATCGATAGTGTACGACATACTGTACACCAA-GGTGCTGGGCGTGCCGGACGTGCAGTACGCCGTCGAGCGGATGCTGCACGATCCCGACGACACGAAGACTACGTACAGCGAAGGATGAAGAGGGTCGCCAGATCGCCACCACCGAGGACGGCCGCCAGCTGGTGCTGAGCCAGCCGCACGAAACCAA] [+] EMBL BM617327 [CCGCGGACGCGTGGGTCGGAATGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTTTCAAACTAATTGAACTGCTGAACCGTGACCGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGGAGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACACACGGCACCCTGCTGGAGCTGAAGGCCTTGGCGCTGCTTTACAACGCCAATGTACTCCTATTCGAACCGTTCGCCGAGGCTAAGTGGTTCCTGCACAGCGCGGCCAACGATACGGTTTGGCGAGTTTTCTACGGCCGAGACAATCATTTCGATTCAATTTACACCACGGAATACATGATCAATATGGCTGAGTGTCAATCGATAGTGTACGACATACTGTACACCAAGGGTGCTGGGCGTGCCGGACGTGCAGTACGCCGTCGAGCGGATGCTGCACGATCCCGACGACACGAAGACTACGTACAGCGAAGGATGAAGAGGGTCGCC ] [+] EMBL BM608390 [ CCG ATTACGCTGCTCGTTTCAAACTAATTGAACTGCTGAACCGTGACTGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGGAGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACACACGGCACCCTGCTGGAGCTGAAGGCCTTGGCGCTGCTTTACAACGCCAATGTACTCCTATTCGAACCGTTCGCCGAGGCTAAGTGGTTCCTGCACAGCGCGGCCAACGATACGGTTTGGCGAGTTTACTACGGCCGAGACAATCATTTCGATTCAATTTACACCACGGAATACATGATCAATATGGCTGAGTGTCAATCGATAGTGTACGACATACTGTACACCAA GGTGCTGGGCGTGCCGGACGTGCAGTACGCCGTCGAGCGGATGCTGCACGATCCCGACGACACGAAGACTACGTACAGCG AGGATGAAGAGGGTCGCCAGATCGCCACCACCGAGGACG ] [+] EMBL BM595182 [ ccGACCGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGGAGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACACACGGCACCCTGCTGGAGCTGAAGGCCTTGGCGCTGCTTTACAACGCCAATGTACTCCTATTCGAACCGTTCGCCGAGGCTAAGTGGTTCCTGCACAGCGCGGCCAACGATACGGTTTGGCGAGTTTTCTACGGCCGAGACAATCATTTCGATTCAATTTACACCACGGAATACATGATCAATATGGCTGAGTGTCAATCGATAGTGTACGACATACTGTACACCAA GGTGCTGGGCGTGCCGGACGTGCAGTACGCCGTCGAGCGGATGCTGCACGATCCCGACGACACGAAGACTACGTACAGCGAGGGATGAAGAGGGTCGCCAGATCGCCACCACCGAGGACGGCCGCCAGCTGGTGCTGAGCCAGCCGCACGAAACCAA] consensusID : consensus_6646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGATACATACACACACACTGTACACCAACAATAGAAAGTGTTACCAACTGCCGTTAGGTTGGCGTCCTGTGTAATGATAATCGCGCTATCTCTGTCTTTCTAGTTCGTAACGTGTTATACGTCATCATACGTGTCTCTCGCTTTGGCTAGAAGCTTAGTCTCAGCTCAGTGTGGCATGCCCTTTCACTCTTTCTCGTTTGATGGACCTATTCCACAGCTAGATGCTGTTTCTTTTTTTTCTTGCACATCGTCACCTTTGGGCGCCATTTTGAACATTGATTTGCCGGTGGTATTCGGAATGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTTTCAAACTAATTGAACTGCTGAACCGTGACCGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGGAGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACACACGG] [+] EMBL BM595458 [CCGATACATACACACACACTGTACACCAACAATAGAAAGTGTTACCAACTGCCGTTAGGTTGGCGTCCTGTGTAATGATAATCGCGCTATCTCTGTCTTTCTAGTTCGTAACGTGTTATACGTCATCATACGTGTCTCTCGCTTTGGCTAGAAGCTTAGTCTCAGCTCAGTGTGGCATGCCCTTTCACTCTTTCTCGTTTGATGGACCTATTCCACAGCTAGATGCTGTTTCTTTTTTTTCTTGCACATCGTCACCTTTGGGCGCCATTTTGAACATTGATTTGCCGGTGGTATTCGGAATGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTTTCAAACTAATTGAACTGCTGAACCGTGACCGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGGAGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACACACGG] consensusID : consensus_6646#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [CCGAACTGCCGTTAGGTTGGCGTCCTGTGTAATGATAATCGCGCTATCTCTGTCTTTCTAGTTCGTAACGTGTTATACGTCATCATACGTGTCTCTCGCTTTGGCTACAAGCTTAGTCTCAGCTCAGTGTGGCACGCAACTATCTCAGGGAGAAAAAAAGCTACTTGCCCTTTCACTCTTTCTCGTTGGATGGTCCTTGTCCACAGCTAGATGCTGTTTCTTTTTTTTTCTTGCACATCGTCACCTTTGGGCGCCATTTTGAACATTGATTTTGCCGGTGGTATTCGGATTGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTT] [+] EMBL BM616391 [CCGAACTGCCGTTAGGTTGGCGTCCTGTGTAATGATAATCGCGCTATCTCTGTCTTTCTAGTTCGTAACGTGTTATACGTCATCATACGTGTCTCTCGCTTTGGCTACAAGCTTAGTCTCAGCTCAGTGTGGCACGCAACTATCTCAGGGAGAAAAAAAGCTACTTGCCCTTTCACTCTTTCTCGTTGGATGGTCCTTGTCCACAGCTAGATGCTGTTTCTTTTTTTTTCTTGCACATCGTCACCTTTGGGCGCCATTTTGAACATTGATTTTGCCGGTGGTATTCGGATTGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6646#1 CCGATACATACACACACACTGTACACCAACAATAGAAAGTGTTACCAACTGCCGTTAGGT 60 consensus_6646#2 -------------------------------------------CCGAACTGCCGTTAGGT 17 consensus_6646#0 -------------------------------------------CCGCGGACGCGT-GGGT 16 * *** *** consensus_6646#1 TGGCGTCCTGTGTAATGATAATCGCGCTATCTCTGTCTTTCTAGTTCGTAACGTGTTATA 120 consensus_6646#2 TGGCGTCCTGTGTAATGATAATCGCGCTATCTCTGTCTTTCTAGTTCGTAACGTGTTATA 77 consensus_6646#0 CGGAATGTTTTCGCATTAGACTTGCGCCCGAATTACGCTGCTCGTTTCAAACTAATTGAA 76 ** * * * ** * * * **** * * ** *** *** ** * consensus_6646#1 CGTCATCATACGTGTCTCTCGCT--TTGGCTAGAAGCTTAGTCTCAGCTCAGTGTGGCA- 177 consensus_6646#2 CGTCATCATACGTGTCTCTCGCT--TTGGCTACAAGCTTAGTCTCAGCTCAGTGTGGCAC 135 consensus_6646#0 C-TGCTGAACCGTGACCGTGACCGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGT 135 * * * * **** * * * ** * * * * ** * ** consensus_6646#1 ------------------------------TGCCCTTT----CACTCTTTCTCGTTTGAT 203 consensus_6646#2 GCAACTATCTCAGGGAGAAAAAAAGCTACTTGCCCTTT----CACTCTTTCTCGTTGGAT 191 consensus_6646#0 GGATTCGGCTTCGGGTGCCGGGAGAC-GCCCGACATTTATGACAAATTTCTCCAGGAGCT 194 * * *** ** ** * * * consensus_6646#1 GGACCTATTCCACAGCTAGATGCTGTTTCTTTTTTTT-C-TTGCACATCGTCACCTTTGG 261 consensus_6646#2 GGTCCTTGTCCACAGCTAGATGCTGTTTCTTTTTTTTTC-TTGCACATCGTCACCTTTGG 250 consensus_6646#0 CGGATACTACCGCAAGCACACGGCGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGA 254 * ** ** * * * *** * * * ** **** * * consensus_6646#1 GCGCCATTTTGAACATTGATTT-GCCGGTGGTA--TTCGGAATGTTTTCGCATTAGACTT 318 consensus_6646#2 GCGCCATTTTGAACATTGATTTTGCCGGTGGTA--TTCGGATTGTTTTCGCATTAGACTT 308 consensus_6646#0 GCAGCAGCACGGCATCCAGAAATACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACAT 314 ** ** * ** * * **** * * * ** * * ** * consensus_6646#1 GCGC--CCGAATTACGCTGCTCGTTTCAAACTAATTGAACTGCTGAACCGTGACCGTGAC 376 consensus_6646#2 GCGC--CCGAATTACGCTGCTCGTT----------------------------------- 331 consensus_6646#0 GCGCAGCCACAAGGCACAATTCGTAAAGGACATAAAGTGGGGATTCGAAGCATACATGAA 374 **** ** * * * **** consensus_6646#1 CGGCTGCCAGGATGGGTGACAACAAACCGCCCAAGCGTGGATTCGGCTTCGGGTGCCGGG 436 consensus_6646#2 ------------------------------------------------------------ consensus_6646#0 CAATATGAGCCGGATGCGCACACACGGCACCCTGCTGGAGCTGAAGGCCTTGGCGCTGCT 434 consensus_6646#1 AGACGCCCGACATTTATGACAAATTTCTCCAGGAGCTCGGATACTACCGCAAGCACACGG 496 consensus_6646#2 ------------------------------------------------------------ consensus_6646#0 TTACAACGCCAATGTACTCCTATTCGAACCGTTCGCCGAGGCTAAGTGGTTCCTGCACAG 494 consensus_6646#1 CGTTGGATACGTCCTCGCTGTTTCGCGTCGTTTCCGAGCAGCAGCACGGCATCCAGAAAT 556 consensus_6646#2 ------------------------------------------------------------ consensus_6646#0 CGCGGCCAACGATACGGTTTGGCGAGTTTTCTACGGCCGAGACAATCATTTCGATTCAAT 554 consensus_6646#1 ACCATGAGAAAGTTCGCAAGGACTGCGTAATGTACATGCGCAGCCACAAGGCACAATTCG 616 consensus_6646#2 ------------------------------------------------------------ consensus_6646#0 TTACACCACGGAATACATGATCAATATGGCTGAGTGTCAATCGATAGTGTACGACATACT 614 consensus_6646#1 TAAAGGACATAAAGTGGGGATTCGAAGCATACATGAACAATATGAGCCGGATGCGCACAC 676 consensus_6646#2 ------------------------------------------------------------ consensus_6646#0 GTACACCAAGGTGCTGGGCGTGCCGGACGTGCAGTACGCCGTCGAGCGGATGCTGCACGA 674 consensus_6646#1 ACGG-------------------------------------------------------- 680 consensus_6646#2 ------------------------------------------------------------ consensus_6646#0 TCCCGACGACACGAAGACTACGTACAGCGAAGGATGAAGAGGGTCGCCAGATCGCCACCA 734 consensus_6646#1 ---------------------------------------------- consensus_6646#2 ---------------------------------------------- consensus_6646#0 CCGAGGACGGCCGCCAGCTGGTGCTGAGCCAGCCGCACGAAACCAA 780 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||