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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1358 fasta sequence
[CCGCAACTTCTCTCGGCTAGGCAATGGAAAAATGATCTTCCCCGTGGAGCCTGCGTGATAGTGGAGGTGTCGATATCGCACGAAAATGCCACCACGCTGCTAGGGGGAGTGAACGGTGTTGTGCTGGCCTCGCGGTACCTAATCGAACCCTGCGGCAGTGGCAAGTGCAAGCTAATGCATCTATCCCGCGTAGACATGAAAGGCCGTACGCCCGACTGGTACAACAAAAACTACGGACACATCTGTCAGCAATATCTTTCGAAGATCAAAAAGTTCTTTGAACACTGCACCGAGGGACCTGAAACGAAAGTATAATAGCATCATCACAAAACGGAGTTGGAGCTCAGTGTTCACAGACACACACACACACTGTCTAAACCCTCCACGCCCTCCACCCGAGACCCGAGATATTATATCTTTAATGCGATTTGTACGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGCTGTACCATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTGTGATGGATTGATGGAAAACCTTTTAACCCTTTTTGCTATAAATCCAGCCAAACACACACACACACACATACGCAGACACAAAAAGACCACACAAACAATATTAAAACACGCCTCGAGGAAACGTGAAACTTATACAAGAAGATGCGCACGAGTGAAAGAACCAACCAGTTGATTGTCCTAAAACATTCCAGAACATTTCATTACCAAGTGCCTAATGTAACCAACTCACAAAACAAAACAAAACAAAACAAGAAAGGAACAAACTAATAATATTAAATGTTTGGTAGTTGACGGTAGAAAGGGGAAAAACAAACGTTAGTTAAAAAAAACACAGACGGAAAAGGCAAACAATTAAAGACACGAAAGAAGCGACACAAACTCATGTGTTGAAAGCAAAAGGGGAGAAAACAAAACAATTGTTATCGAAGCACAACGTTTTTTCTTTTGCTTCTTCTGCGCTCTTTGATAAGCGTATGGTGAAGCTTTTGCGCAATCCCTTCGCGCCCTACCAATGACACCCTGCACTGCAGCCTCCCCGCCTTTCGTATAGTAGCCAGCAGAGACAGAGAAAGAGAGAAAGATGGAAGGATATATAAATCTTTTTTATGTATCGTTTATAGCAGCACACATACATACATGCATACACACGCAACAACTAAAACTAGTCCAAACACAAAACTTAACCAATATTTAGCAAAGCCTGTTTTTGTTTTTTTTTATTAATAATATACGAAAAAGATATGTTTTT]
[+] EMBL BM597391 [CCGCAACTTCTCTCGGCTAGGCAATGGAAAAATGATCTTCCCCGTGGAGCCTGCGTGATAGTGGAGGTGTCGATATCGCACGAAAATGCCACCACGCTGCTAGGGGGAGTGAACGGTGTTGTGCTGGCCTCGCGGTACCTAATCGAACCCTGCGGCAGTGGCAAGTGCAAGCTAATGCATCTATCCCGCGTAGACATGAAAGGCCGTACGCCCGACTGGTACAACAAAAACTACGGACACATCTGTCAGCAATATCTTTCGAAGATCAAAAAGTTCTTTGAACACTGCACCGAGGGACCTGAAACGAAAGTATAATAGCATCATCACAAAACGGAGTTGGAGCTCAGTGTTCACAGACACACACACACACTGTCTAAACCCTCCACGCCCTCCACCCGAGACCCGAGATATTATATCTTTAATGCGATTTGTACGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGCTGTACCATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTGTGATGGATTGATGGAAAACCTTTTAACCCTTTTTGCTATAAATCC ]
[+] EMBL BM619396 [ ccgGCGATTTGTACGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGCTGTACCATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTGTGATGGATTGATGGAAAACCTTTTAACCCTTTTTGCTATAAATCCAGCCAAACACACACACACACACATACGCAGACACAAAAAGACCACACAAACAATATTAAAACACGCCTCGAGGAAACGTGAAACTTATACAAGAAGATGCGCACGAGTGAAAGAACCAACCAGTTGATTGTCCTAAAACATTCCAGAACATTTCATTACCAAGTGCCTAATGTAACCAACTCACAAAACAAAACAAAACAAAACAAGAAAGGAACAAACTAATAATATTAAATGTTTGGTAGTTGACGGTAGAAAGGGGAAAAACAAACGTTAGTTAAAAAAAACACAGACGGAAAAGGCAAACAATTAAAGACACGAAAGAAGCGACACAAACTCATGTGTTGAAAGCAAAAGGGGAGAAAACAAAACAATTGTTATCGAAGCACAACGTTTTTTCTTTTGCTTCTTCTGCGCTCTTTGATAAGCGTATGGTGAAGCTTTTGCG ]
[+] EMBL BM604341 [ ccgCGCAGACACAAAAAGACCACACAAACAATATTAAAACACGCCTCGAGGAAACGTGAAACTTATACAAGAAGATGCGCACGAGTGAAAGAACCAACCAGTTGATTGTCCTAAAACATTCCAGAACATTTCATTACCAAGTGCCTAATGTAACCAACTCACAAAACAAAACAAAACAAAACAAGAAAGGAACAAACTAATAATATTAAATGTTTGGTAGTTGACGGTAGAAAGGGGAAAAACAAACGTTAGTTAAAAAAAACACAGACGGAAAAGGCAAACAATTAAAGACACGAAAGAAGCGACACAAACTCATGTGTTGAAAGCAAAAGGGGAGAAAACAAAACAATTGTTATCGAAGCACAACGTTTTTTCTTTTGCTTCTTCTGCGCTCTTTGATAAGCGTATGGTGAAGCTTTTGCGCAATCCCTTCGCGCCCTACCAATGACACCCTGCACTGCAGCCTCCCCGCCTTTCGTATAGTAGCCAGCAGAGACAGAGAAAGAGAGAAAGATGGAAGGATATATAAATCTTTTTTATGTATCGTTTATAGCAGCACACATACATACATGCATACACACGCAACAACTAAAACTAGTCCAAACACAAAACTTAACCAATATTTAGCAAAGCCTGTTTTTGTTTTTTTTTATTAATAATATACGAAAAAGATATGTTTTT]
consensusID : consensus_6652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[CCGAGGACACCGACGTCTTCCAGTATGCGTGCGGCCAACCCGTCACGGAGTACTGTGTCGTTAGGCAATGGAAAAATGATCTTCCCCGTGGAGCCTGCGTGATAGTGGAGGTGTCGATATCGCACGAAAATGCCACCACGCTGCTAGGGGGAGTGAACGGTGTTGTGCTGGCCTCGCGGTACCTAATCGAACCCTGCGGCAGTGGCAAGTGCAAGCTAATGCATCTATCCCGCGTAGACATGAAAGGCCGTACGCCCGACTGGTACAACAAAAACTACGGACACATCTGTCAGCAATATCTTTCGAAGATCAAAAAGTTCTTTGAACACTGCACCGAGGGACCTGAAACGAAAGTATAATAGCATCATCACAAAACGGAGTTGGAGCTCAGTGTTCACAGACACACACACACACTATCTAAACCCTCCACGCCCTCCACCCGAGACCCGAGATATTCTATCTTTAATGCGATTTGTACGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGC]
[+] EMBL BM595278 [CCGAGGACACCGACGTCTTCCAGTATGCGTGCGGCCAACCCGTCACGGAGTACTGTGTCGTTAGGCAATGGAAAAATGATCTTCCCCGTGGAGCCTGCGTGATAGTGGAGGTGTCGATATCGCACGAAAATGCCACCACGCTGCTAGGGGGAGTGAACGGTGTTGTGCTGGCCTCGCGGTACCTAATCGAACCCTGCGGCAGTGGCAAGTGCAAGCTAATGCATCTATCCCGCGTAGACATGAAAGGCCGTACGCCCGACTGGTACAACAAAAACTACGGACACATCTGTCAGCAATATCTTTCGAAGATCAAAAAGTTCTTTGAACACTGCACCGAGGGACCTGAAACGAAAGTATAATAGCATCATCACAAAACGGAGTTGGAGCTCAGTGTTCACAGACACACACACACACTATCTAAACCCTCCACGCCCTCCACCCGAGACCCGAGATATTCTATCTTTAATGCGATTTGTACGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGC]
consensusID : consensus_6652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence
[GCAGAATCGGCACGAGGGTATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGCTGTACCATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTNNTGATGGATTGCATGGAAAAACCTTTTTAACCCTTTTTGCTATAAATCCAGGCCCAAACACACAAGCAACACACACAATACGCCAAGAACACAAAAAGAACCACACAAAACAATTATTTAAAAAACAACGCCCTTCGAAGGAAACGTGAAAACTTTAATACCAAAGGAAGATGCCGCACNCGAGGTGAAAAGAAACCCAAACCAAGGTTGGATTTGTCCCTAAAAAACATTTCCCAGA]
[+] EMBL BX468668 [GCAGAATCGGCACGAGGGTATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGCTGTACCATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTNNTGATGGATTGCATGGAAAAACCTTTTTAACCCTTTTTGCTATAAATCCAGGCCCAAACACACAAGCAACACACACAATACGCCAAGAACACAAAAAGAACCACACAAAACAATTATTTAAAAAACAACGCCCTTCGAAGGAAACGTGAAAACTTTAATACCAAAGGAAGATGCCGCACNCGAGGTGAAAAGAAACCCAAACCAAGGTTGGATTTGTCCCTAAAAAACATTTCCCAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6652#0 --------------------------------------------CCGCAACTTCTCTCGG 16
consensus_6652#1 CCGAGGACACCGACGTCTTCCAGTATGCGTGCGGCCAACCCGTCACGGAGTACTGTGTCG 60
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 CTAGGCAATGGAAAAATGATCTTCCCCGTGGAGCCTGCGTGATAGTGGAGGTGTCGATAT 76
consensus_6652#1 TTAGGCAATGGAAAAATGATCTTCCCCGTGGAGCCTGCGTGATAGTGGAGGTGTCGATAT 120
consensus_6652#2 ---------------------------GCAGAATCGGCACGAGGGTATTGTTAGAAAGA- 32
* ** * ** ** ** * * * *
consensus_6652#0 CGCACGAAAATGCCACCACGCTGCTAGGGGGAGTGAACGGTGTTGTGCTGGCCTCG-CGG 135
consensus_6652#1 CGCACGAAAATGCCACCACGCTGCTAGGGGGAGTGAACGGTGTTGTGCTGGCCTCG-CGG 179
consensus_6652#2 CACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAG 92
* * **** * *** * * * ** * * *** * * * *
consensus_6652#0 TACCTAATCGAACCCTGCGGCAGTGGCAAGTGCAAGCTAATGCATCTATCCCGCGTAGAC 195
consensus_6652#1 TACCTAATCGAACCCTGCGGCAGTGGCAAGTGCAAGCTAATGCATCTATCCCGCGTAGAC 239
consensus_6652#2 GAGAAAATGTAATCTCATACAGGAAACAAAGATACAC-AATATTTATATCTTT------- 144
* *** ** * * *** * * *** * ****
consensus_6652#0 ATGAAAGGCCGTACGCCCGACTGGTACAACAAAAACTACGGACACATCTGTCAGCAATAT 255
consensus_6652#1 ATGAAAGGCCGTACGCCCGACTGGTACAACAAAAACTACGGACACATCTGTCAGCAATAT 299
consensus_6652#2 -------GCTGTAC-CATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTNNTGATGG 196
** **** * ** * * *** * ** * ** ** **
consensus_6652#0 CTTTCGAAGATCAAAAAGTTCTTTGAACACTGCACCGAGGGACCTGAAACGAAAGTATAA 315
consensus_6652#1 CTTTCGAAGATCAAAAAGTTCTTTGAACACTGCACCGAGGGACCTGAAACGAAAGTATAA 359
consensus_6652#2 ATTGCATGG---AAAAACCTTTTTAACCCTTTTTGCTATAAATCC-AGGCCCAAACACAC 252
** * * ***** * *** * * * * * * * * * ** * *
consensus_6652#0 TAGCATCATCACAAAACGGAGTTGGAGCTCAGTGTTCACAGACACACACACACACTGTCT 375
consensus_6652#1 TAGCATCATCACAAAACGGAGTTGGAGCTCAGTGTTCACAGACACACACACACACTATCT 419
consensus_6652#2 AAGCAACA-CACACAATACGCCAAGAACACAAAA---AGAACCACACAAAACAATTATTT 308
**** ** **** ** ** * ** * * ****** * * * * *
consensus_6652#0 AAACCCTCCACGCCCTCCACCCGAGACCCGAGATATTATATCTTTAATGCGATT--TGTA 433
consensus_6652#1 AAACCCTCCACGCCCTCCACCCGAGACCCGAGATATTCTATCTTTAATGCGATT--TGTA 477
consensus_6652#2 AAAAAA-CAACGCCCTTCGAAGGAAACGTGAAAACTTTAATACCAAAGGAAGATGCCGCA 367
*** * ******* * ** ** ** * ** ** ** * * * *
consensus_6652#0 CGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAA 493
consensus_6652#1 CGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAA 537
consensus_6652#2 CNCGAGGTGAAAAGAAACCCAAACCAAGGTTGGATTTGTCCCTAAAAAACATTTCCCAGA 427
* * * * ***** ** ** *** * * * * * ** *** *
consensus_6652#0 GACAGTCTGACACAGACAGGG-AGAAAATGTAATCTCATACAGGAAACAAAGATACACAA 552
consensus_6652#1 GACAGTCTGACACAGACAGGGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAA 597
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 TATTTATATCTTTGCTGTACCATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTGTG 612
consensus_6652#1 TATTTATATCTTTGC--------------------------------------------- 612
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 ATGGATTGATGGAAAACCTTTTAACCCTTTTTGCTATAAATCCAGCCAAACACACACACA 672
consensus_6652#1 ------------------------------------------------------------
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 CACACATACGCAGACACAAAAAGACCACACAAACAATATTAAAACACGCCTCGAGGAAAC 732
consensus_6652#1 ------------------------------------------------------------
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 GTGAAACTTATACAAGAAGATGCGCACGAGTGAAAGAACCAACCAGTTGATTGTCCTAAA 792
consensus_6652#1 ------------------------------------------------------------
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 ACATTCCAGAACATTTCATTACCAAGTGCCTAATGTAACCAACTCACAAAACAAAACAAA 852
consensus_6652#1 ------------------------------------------------------------
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 ACAAAACAAGAAAGGAACAAACTAATAATATTAAATGTTTGGTAGTTGACGGTAGAAAGG 912
consensus_6652#1 ------------------------------------------------------------
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 GGAAAAACAAACGTTAGTTAAAAAAAACACAGACGGAAAAGGCAAACAATTAAAGACACG 972
consensus_6652#1 ------------------------------------------------------------
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 AAAGAAGCGACACAAACTCATGTGTTGAAAGCAAAAGGGGAGAAAACAAAACAATTGTTA 1032
consensus_6652#1 ------------------------------------------------------------
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 TCGAAGCACAACGTTTTTTCTTTTGCTTCTTCTGCGCTCTTTGATAAGCGTATGGTGAAG 1092
consensus_6652#1 ------------------------------------------------------------
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 CTTTTGCGCAATCCCTTCGCGCCCTACCAATGACACCCTGCACTGCAGCCTCCCCGCCTT 1152
consensus_6652#1 ------------------------------------------------------------
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 TCGTATAGTAGCCAGCAGAGACAGAGAAAGAGAGAAAGATGGAAGGATATATAAATCTTT 1212
consensus_6652#1 ------------------------------------------------------------
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 TTTATGTATCGTTTATAGCAGCACACATACATACATGCATACACACGCAACAACTAAAAC 1272
consensus_6652#1 ------------------------------------------------------------
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 TAGTCCAAACACAAAACTTAACCAATATTTAGCAAAGCCTGTTTTTGTTTTTTTTTATTA 1332
consensus_6652#1 ------------------------------------------------------------
consensus_6652#2 ------------------------------------------------------------
consensus_6652#0 ATAATATACGAAAAAGATATGTTTTT 1358
consensus_6652#1 --------------------------
consensus_6652#2 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||