These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1358 fasta sequence [CCGCAACTTCTCTCGGCTAGGCAATGGAAAAATGATCTTCCCCGTGGAGCCTGCGTGATAGTGGAGGTGTCGATATCGCACGAAAATGCCACCACGCTGCTAGGGGGAGTGAACGGTGTTGTGCTGGCCTCGCGGTACCTAATCGAACCCTGCGGCAGTGGCAAGTGCAAGCTAATGCATCTATCCCGCGTAGACATGAAAGGCCGTACGCCCGACTGGTACAACAAAAACTACGGACACATCTGTCAGCAATATCTTTCGAAGATCAAAAAGTTCTTTGAACACTGCACCGAGGGACCTGAAACGAAAGTATAATAGCATCATCACAAAACGGAGTTGGAGCTCAGTGTTCACAGACACACACACACACTGTCTAAACCCTCCACGCCCTCCACCCGAGACCCGAGATATTATATCTTTAATGCGATTTGTACGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGCTGTACCATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTGTGATGGATTGATGGAAAACCTTTTAACCCTTTTTGCTATAAATCCAGCCAAACACACACACACACACATACGCAGACACAAAAAGACCACACAAACAATATTAAAACACGCCTCGAGGAAACGTGAAACTTATACAAGAAGATGCGCACGAGTGAAAGAACCAACCAGTTGATTGTCCTAAAACATTCCAGAACATTTCATTACCAAGTGCCTAATGTAACCAACTCACAAAACAAAACAAAACAAAACAAGAAAGGAACAAACTAATAATATTAAATGTTTGGTAGTTGACGGTAGAAAGGGGAAAAACAAACGTTAGTTAAAAAAAACACAGACGGAAAAGGCAAACAATTAAAGACACGAAAGAAGCGACACAAACTCATGTGTTGAAAGCAAAAGGGGAGAAAACAAAACAATTGTTATCGAAGCACAACGTTTTTTCTTTTGCTTCTTCTGCGCTCTTTGATAAGCGTATGGTGAAGCTTTTGCGCAATCCCTTCGCGCCCTACCAATGACACCCTGCACTGCAGCCTCCCCGCCTTTCGTATAGTAGCCAGCAGAGACAGAGAAAGAGAGAAAGATGGAAGGATATATAAATCTTTTTTATGTATCGTTTATAGCAGCACACATACATACATGCATACACACGCAACAACTAAAACTAGTCCAAACACAAAACTTAACCAATATTTAGCAAAGCCTGTTTTTGTTTTTTTTTATTAATAATATACGAAAAAGATATGTTTTT] [+] EMBL BM597391 [CCGCAACTTCTCTCGGCTAGGCAATGGAAAAATGATCTTCCCCGTGGAGCCTGCGTGATAGTGGAGGTGTCGATATCGCACGAAAATGCCACCACGCTGCTAGGGGGAGTGAACGGTGTTGTGCTGGCCTCGCGGTACCTAATCGAACCCTGCGGCAGTGGCAAGTGCAAGCTAATGCATCTATCCCGCGTAGACATGAAAGGCCGTACGCCCGACTGGTACAACAAAAACTACGGACACATCTGTCAGCAATATCTTTCGAAGATCAAAAAGTTCTTTGAACACTGCACCGAGGGACCTGAAACGAAAGTATAATAGCATCATCACAAAACGGAGTTGGAGCTCAGTGTTCACAGACACACACACACACTGTCTAAACCCTCCACGCCCTCCACCCGAGACCCGAGATATTATATCTTTAATGCGATTTGTACGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGCTGTACCATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTGTGATGGATTGATGGAAAACCTTTTAACCCTTTTTGCTATAAATCC ] [+] EMBL BM619396 [ ccgGCGATTTGTACGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGCTGTACCATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTGTGATGGATTGATGGAAAACCTTTTAACCCTTTTTGCTATAAATCCAGCCAAACACACACACACACACATACGCAGACACAAAAAGACCACACAAACAATATTAAAACACGCCTCGAGGAAACGTGAAACTTATACAAGAAGATGCGCACGAGTGAAAGAACCAACCAGTTGATTGTCCTAAAACATTCCAGAACATTTCATTACCAAGTGCCTAATGTAACCAACTCACAAAACAAAACAAAACAAAACAAGAAAGGAACAAACTAATAATATTAAATGTTTGGTAGTTGACGGTAGAAAGGGGAAAAACAAACGTTAGTTAAAAAAAACACAGACGGAAAAGGCAAACAATTAAAGACACGAAAGAAGCGACACAAACTCATGTGTTGAAAGCAAAAGGGGAGAAAACAAAACAATTGTTATCGAAGCACAACGTTTTTTCTTTTGCTTCTTCTGCGCTCTTTGATAAGCGTATGGTGAAGCTTTTGCG ] [+] EMBL BM604341 [ ccgCGCAGACACAAAAAGACCACACAAACAATATTAAAACACGCCTCGAGGAAACGTGAAACTTATACAAGAAGATGCGCACGAGTGAAAGAACCAACCAGTTGATTGTCCTAAAACATTCCAGAACATTTCATTACCAAGTGCCTAATGTAACCAACTCACAAAACAAAACAAAACAAAACAAGAAAGGAACAAACTAATAATATTAAATGTTTGGTAGTTGACGGTAGAAAGGGGAAAAACAAACGTTAGTTAAAAAAAACACAGACGGAAAAGGCAAACAATTAAAGACACGAAAGAAGCGACACAAACTCATGTGTTGAAAGCAAAAGGGGAGAAAACAAAACAATTGTTATCGAAGCACAACGTTTTTTCTTTTGCTTCTTCTGCGCTCTTTGATAAGCGTATGGTGAAGCTTTTGCGCAATCCCTTCGCGCCCTACCAATGACACCCTGCACTGCAGCCTCCCCGCCTTTCGTATAGTAGCCAGCAGAGACAGAGAAAGAGAGAAAGATGGAAGGATATATAAATCTTTTTTATGTATCGTTTATAGCAGCACACATACATACATGCATACACACGCAACAACTAAAACTAGTCCAAACACAAAACTTAACCAATATTTAGCAAAGCCTGTTTTTGTTTTTTTTTATTAATAATATACGAAAAAGATATGTTTTT] consensusID : consensus_6652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [CCGAGGACACCGACGTCTTCCAGTATGCGTGCGGCCAACCCGTCACGGAGTACTGTGTCGTTAGGCAATGGAAAAATGATCTTCCCCGTGGAGCCTGCGTGATAGTGGAGGTGTCGATATCGCACGAAAATGCCACCACGCTGCTAGGGGGAGTGAACGGTGTTGTGCTGGCCTCGCGGTACCTAATCGAACCCTGCGGCAGTGGCAAGTGCAAGCTAATGCATCTATCCCGCGTAGACATGAAAGGCCGTACGCCCGACTGGTACAACAAAAACTACGGACACATCTGTCAGCAATATCTTTCGAAGATCAAAAAGTTCTTTGAACACTGCACCGAGGGACCTGAAACGAAAGTATAATAGCATCATCACAAAACGGAGTTGGAGCTCAGTGTTCACAGACACACACACACACTATCTAAACCCTCCACGCCCTCCACCCGAGACCCGAGATATTCTATCTTTAATGCGATTTGTACGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGC] [+] EMBL BM595278 [CCGAGGACACCGACGTCTTCCAGTATGCGTGCGGCCAACCCGTCACGGAGTACTGTGTCGTTAGGCAATGGAAAAATGATCTTCCCCGTGGAGCCTGCGTGATAGTGGAGGTGTCGATATCGCACGAAAATGCCACCACGCTGCTAGGGGGAGTGAACGGTGTTGTGCTGGCCTCGCGGTACCTAATCGAACCCTGCGGCAGTGGCAAGTGCAAGCTAATGCATCTATCCCGCGTAGACATGAAAGGCCGTACGCCCGACTGGTACAACAAAAACTACGGACACATCTGTCAGCAATATCTTTCGAAGATCAAAAAGTTCTTTGAACACTGCACCGAGGGACCTGAAACGAAAGTATAATAGCATCATCACAAAACGGAGTTGGAGCTCAGTGTTCACAGACACACACACACACTATCTAAACCCTCCACGCCCTCCACCCGAGACCCGAGATATTCTATCTTTAATGCGATTTGTACGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGC] consensusID : consensus_6652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [GCAGAATCGGCACGAGGGTATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGCTGTACCATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTNNTGATGGATTGCATGGAAAAACCTTTTTAACCCTTTTTGCTATAAATCCAGGCCCAAACACACAAGCAACACACACAATACGCCAAGAACACAAAAAGAACCACACAAAACAATTATTTAAAAAACAACGCCCTTCGAAGGAAACGTGAAAACTTTAATACCAAAGGAAGATGCCGCACNCGAGGTGAAAAGAAACCCAAACCAAGGTTGGATTTGTCCCTAAAAAACATTTCCCAGA] [+] EMBL BX468668 [GCAGAATCGGCACGAGGGTATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAATATTTATATCTTTGCTGTACCATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTNNTGATGGATTGCATGGAAAAACCTTTTTAACCCTTTTTGCTATAAATCCAGGCCCAAACACACAAGCAACACACACAATACGCCAAGAACACAAAAAGAACCACACAAAACAATTATTTAAAAAACAACGCCCTTCGAAGGAAACGTGAAAACTTTAATACCAAAGGAAGATGCCGCACNCGAGGTGAAAAGAAACCCAAACCAAGGTTGGATTTGTCCCTAAAAAACATTTCCCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6652#0 --------------------------------------------CCGCAACTTCTCTCGG 16 consensus_6652#1 CCGAGGACACCGACGTCTTCCAGTATGCGTGCGGCCAACCCGTCACGGAGTACTGTGTCG 60 consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 CTAGGCAATGGAAAAATGATCTTCCCCGTGGAGCCTGCGTGATAGTGGAGGTGTCGATAT 76 consensus_6652#1 TTAGGCAATGGAAAAATGATCTTCCCCGTGGAGCCTGCGTGATAGTGGAGGTGTCGATAT 120 consensus_6652#2 ---------------------------GCAGAATCGGCACGAGGGTATTGTTAGAAAGA- 32 * ** * ** ** ** * * * * consensus_6652#0 CGCACGAAAATGCCACCACGCTGCTAGGGGGAGTGAACGGTGTTGTGCTGGCCTCG-CGG 135 consensus_6652#1 CGCACGAAAATGCCACCACGCTGCTAGGGGGAGTGAACGGTGTTGTGCTGGCCTCG-CGG 179 consensus_6652#2 CACTAGAAAGTTACACATACACGTCACAATCATACAAAGAAGACAGTCTGACACAGACAG 92 * * **** * *** * * * ** * * *** * * * * consensus_6652#0 TACCTAATCGAACCCTGCGGCAGTGGCAAGTGCAAGCTAATGCATCTATCCCGCGTAGAC 195 consensus_6652#1 TACCTAATCGAACCCTGCGGCAGTGGCAAGTGCAAGCTAATGCATCTATCCCGCGTAGAC 239 consensus_6652#2 GAGAAAATGTAATCTCATACAGGAAACAAAGATACAC-AATATTTATATCTTT------- 144 * *** ** * * *** * * *** * **** consensus_6652#0 ATGAAAGGCCGTACGCCCGACTGGTACAACAAAAACTACGGACACATCTGTCAGCAATAT 255 consensus_6652#1 ATGAAAGGCCGTACGCCCGACTGGTACAACAAAAACTACGGACACATCTGTCAGCAATAT 299 consensus_6652#2 -------GCTGTAC-CATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTNNTGATGG 196 ** **** * ** * * *** * ** * ** ** ** consensus_6652#0 CTTTCGAAGATCAAAAAGTTCTTTGAACACTGCACCGAGGGACCTGAAACGAAAGTATAA 315 consensus_6652#1 CTTTCGAAGATCAAAAAGTTCTTTGAACACTGCACCGAGGGACCTGAAACGAAAGTATAA 359 consensus_6652#2 ATTGCATGG---AAAAACCTTTTTAACCCTTTTTGCTATAAATCC-AGGCCCAAACACAC 252 ** * * ***** * *** * * * * * * * * * ** * * consensus_6652#0 TAGCATCATCACAAAACGGAGTTGGAGCTCAGTGTTCACAGACACACACACACACTGTCT 375 consensus_6652#1 TAGCATCATCACAAAACGGAGTTGGAGCTCAGTGTTCACAGACACACACACACACTATCT 419 consensus_6652#2 AAGCAACA-CACACAATACGCCAAGAACACAAAA---AGAACCACACAAAACAATTATTT 308 **** ** **** ** ** * ** * * ****** * * * * * consensus_6652#0 AAACCCTCCACGCCCTCCACCCGAGACCCGAGATATTATATCTTTAATGCGATT--TGTA 433 consensus_6652#1 AAACCCTCCACGCCCTCCACCCGAGACCCGAGATATTCTATCTTTAATGCGATT--TGTA 477 consensus_6652#2 AAAAAA-CAACGCCCTTCGAAGGAAACGTGAAAACTTTAATACCAAAGGAAGATGCCGCA 367 *** * ******* * ** ** ** * ** ** ** * * * * consensus_6652#0 CGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAA 493 consensus_6652#1 CGAGGGATTGTTAGAAAGACACTAGAAAGTTACACATACACGTCACAATCATACAAAGAA 537 consensus_6652#2 CNCGAGGTGAAAAGAAACCCAAACCAAGGTTGGATTTGTCCCTAAAAAACATTTCCCAGA 427 * * * * ***** ** ** *** * * * * * ** *** * consensus_6652#0 GACAGTCTGACACAGACAGGG-AGAAAATGTAATCTCATACAGGAAACAAAGATACACAA 552 consensus_6652#1 GACAGTCTGACACAGACAGGGGAGAAAATGTAATCTCATACAGGAAACAAAGATACACAA 597 consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 TATTTATATCTTTGCTGTACCATTTTTGCTTGTAAAAACAACACAGTGGTATGTGGTGTG 612 consensus_6652#1 TATTTATATCTTTGC--------------------------------------------- 612 consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 ATGGATTGATGGAAAACCTTTTAACCCTTTTTGCTATAAATCCAGCCAAACACACACACA 672 consensus_6652#1 ------------------------------------------------------------ consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 CACACATACGCAGACACAAAAAGACCACACAAACAATATTAAAACACGCCTCGAGGAAAC 732 consensus_6652#1 ------------------------------------------------------------ consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 GTGAAACTTATACAAGAAGATGCGCACGAGTGAAAGAACCAACCAGTTGATTGTCCTAAA 792 consensus_6652#1 ------------------------------------------------------------ consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 ACATTCCAGAACATTTCATTACCAAGTGCCTAATGTAACCAACTCACAAAACAAAACAAA 852 consensus_6652#1 ------------------------------------------------------------ consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 ACAAAACAAGAAAGGAACAAACTAATAATATTAAATGTTTGGTAGTTGACGGTAGAAAGG 912 consensus_6652#1 ------------------------------------------------------------ consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 GGAAAAACAAACGTTAGTTAAAAAAAACACAGACGGAAAAGGCAAACAATTAAAGACACG 972 consensus_6652#1 ------------------------------------------------------------ consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 AAAGAAGCGACACAAACTCATGTGTTGAAAGCAAAAGGGGAGAAAACAAAACAATTGTTA 1032 consensus_6652#1 ------------------------------------------------------------ consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 TCGAAGCACAACGTTTTTTCTTTTGCTTCTTCTGCGCTCTTTGATAAGCGTATGGTGAAG 1092 consensus_6652#1 ------------------------------------------------------------ consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 CTTTTGCGCAATCCCTTCGCGCCCTACCAATGACACCCTGCACTGCAGCCTCCCCGCCTT 1152 consensus_6652#1 ------------------------------------------------------------ consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 TCGTATAGTAGCCAGCAGAGACAGAGAAAGAGAGAAAGATGGAAGGATATATAAATCTTT 1212 consensus_6652#1 ------------------------------------------------------------ consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 TTTATGTATCGTTTATAGCAGCACACATACATACATGCATACACACGCAACAACTAAAAC 1272 consensus_6652#1 ------------------------------------------------------------ consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 TAGTCCAAACACAAAACTTAACCAATATTTAGCAAAGCCTGTTTTTGTTTTTTTTTATTA 1332 consensus_6652#1 ------------------------------------------------------------ consensus_6652#2 ------------------------------------------------------------ consensus_6652#0 ATAATATACGAAAAAGATATGTTTTT 1358 consensus_6652#1 -------------------------- consensus_6652#2 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||