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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[CCGCACACACTTACACTGAGAAAGGGAGAGAAAGAGAAAGAGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAAATCGCCTAGTGTGTAAGGATGTTAAATGAAAGTAGCAGTATAAATGAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCACTCTTGAAGGAAAAAAATACGAATATGCAAAACTGATTTACTGAGCAACCACTACACCGCTCAGCAGGCGGGAAACGGAAAAGAGAGACAGAAGAGAAAAGCTTAAAGCTCTCCAGCTAGAGGGAGACCGCAGTAACCCTACCCGGCGAAGGAAGTAGCAGGCAGAAGCGAGATGTGCGATTCGTAGTGGCCGAGAATTCGAGAAAGTAGTAGTGAACACATACACAAACATACGTACACACACACATACATACACACATGAAACACAAAAACACCTAAAAGTTAAGATGTTAGTTGCAGACACCGTGTCGAGAAAATGTAGAGTGCGGAACGGCGAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCCAAAACTGGGTTGAAAACCT]
[+] EMBL BM641563 [CCGCACACACTTACACTGAGAAAGGGAGAGAAAGAGAAAGAGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAAATCGCCTAGTGTGTAAGGATGTTAAATGAAAGTAGCAGTATAAATGAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCACTCTTGAAGGAAAAAAATACGAATATGCAAAACTGATTTACTGAGCAACCACTACACCGCTCAGCAGGCGGGAAACGGAAAAGAGAGACAGAAGAGAAAAGCTTAAAGCTCTCCAGCTAGAGGGAGACCGCAGTAACCCTACCCGGCGAAGGAAGTAGCAGGCAGAAGCGAGATGTGCGATTCGTAGTGGCCGAGAATTCGAGAAAGTAGTAGTGAACACATACACAAACATACGTACACACACACATACATACACACATGAAACACAAAAACACCTAAAAGTTAAGATGTTAGTTGCAGACACCGTGTCGAGAAAATGTAGAGTGCGGAACGGCGAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCCAAAACTGGGTTGAAAACCT]
consensusID : consensus_6660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CCCAGGCTTTAACGATCTTCTGACTCACTTCCGGAAGCCGGATGTAAAAAGACGGAAACAAAAAAAAACTAAAACGATAGAAAAAGAAGAAGAATTAATGTTTGCAGATTATGCTGCATGCTGCTTATATGTTGCGTCATTAAGAATTAACACATACAAACACACACTTACACTGAGAAAGGGAGAGCAAAGAGCAAAGAGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAAATCGCCTAGTGTGTAAGGATGTTAAATGAANAGTAGCAGTATANNNATGAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCACTCTTGCAAGCGAAACAACATACGAATATGCAAACACTGACTTCTACTCGANCAACCACTACACCGCTCANCAGCGCGGCGNAAACGGCNAAGCAGAGACNNNCAAGAGAAACNCAGCTTANACAGCTCCTCCAGCTACAGGGAGACCCGCAGTAAACCCCTACCCGGCGCANCGGNACAGTACCCAGCGCCNCANGCGAGAATGTGCGATCGCAACNGGCACCGACGCAACTCCNAGCACAANGTACGTCACGTGAACACATACACAACAC]
[+] EMBL AL695900 [CCCAGGCTTTAACGATCTTCTGACTCACTTCCGGAAGCCGGATGTAAAAAGACGGAAACAAAAAAAAACTAAAACGATAGAAAAAGAAGAAGAATTAATGTTTGCAGATTATGCTGCATGCTGCTTATATGTTGCGTCATTAAGAATTAACACATACAAACACACACTTACACTGAGAAAGGGAGAGCAAAGAGCAAAGAGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAAATCGCCTAGTGTGTAAGGATGTTAAATGAANAGTAGCAGTATANNNATGAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCACTCTTGCAAGCGAAACAACATACGAATATGCAAACACTGACTTCTACTCGANCAACCACTACACCGCTCANCAGCGCGGCGNAAACGGCNAAGCAGAGACNNNCAAGAGAAACNCAGCTTANACAGCTCCTCCAGCTACAGGGAGACCCGCAGTAAACCCCTACCCGGCGCANCGGNACAGTACCCAGCGCCNCANGCGAGAATGTGCGATCGCAACNGGCACCGACGCAACTCCNAGCACAANGTACGTCACGTGAACACATACACAACAC]
consensusID : consensus_6660#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[ACGGCGAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCAAAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACAAAACAACAAAGAAGCAAAAACACACTCACACACACAAGAAATCGTAGTAGTAACAAAGAGAGACAAACAAAATGCAGAAACGTTGTAGCCTGTAAGGATTGATAATGGGATGTTGAAATCGAAAAAAGGGAAGAGAGCGCGAGAGAGAGAGAGCGTGAGTGGGAGAGGGAAGGACAGTTAAATGAAGATGAAAAATGAGAAAAAAAGAACCTTTAGCAGCTAAGTGAAACGAAGAAACGCAAACAAAACAAAACAGATGAAACACGGAACGGCGAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCAAAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACAAAACA]
[+] EMBL BX608336 [ACGGCGAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCAAAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACAAAACAACAAAGAAGCAAAAACACACTCACACACACAAGAAATCGTAGTAGTAACAAAGAGAGACAAACAAAATGCAGAAACGTTGTAGCCTGTAAGGATTGATAATGGGATGTTGAAATCGAAAAAAGGGAAGAGAGCGCGAGAGAGAGAGAGCGTGAGTGGGAGAGGGAAGGACAGTTAAATGAAGATGAAAAATGAGAAAAAAAGAACCTTTAGCAGCTAAGTGAAACGAAGAAACGCAAACAAAACAAAACAGATGAAACACGGAACGGCGAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCAAAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACAAAACA]
consensusID : consensus_6660#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence
[CAAATCGCCTAGTGTGTAAGGATGTTAAATGAAAGTAGCAGTATAAATGAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCACTCTTGAAGGAAAAAAATACGAATATGCAAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACAAAACA]
[+] EMBL BX610819 [CAAATCGCCTAGTGTGTAAGGATGTTAAATGAAAGTAGCAGTATAAATGAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCACTCTTGAAGGAAAAAAATACGAATATGCAAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACAAAACA]
consensusID : consensus_6660#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence
[TATGCTCGGATAGCTGTTTACCCTTTTTTATTTTTTACATACATACAACATACACACACACATACATACAATTCATAGAAGAAGAATTAATGTTTGCAGATTATGCTGCATGCTGCTTATATGTTGCGTCATTAAGAATTAACACATACAAACACACACTTACACTGAGAAAGAGGGAGAGAGAGAAAGAGAGAAAAGGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAAATCGCCT]
[+] EMBL BM637086 [TATGCTCGGATAGCTGTTTACCCTTTTTTATTTTTTACATACATACAACATACACACACACATACATACAATTCATAGAAGAAGAATTAATGTTTGCAGATTATGCTGCATGCTGCTTATATGTTGCGTCATTAAGAATTAACACATACAAACACACACTTACACTGAGAAAGAGGGAGAGAGAGAAAGAGAGAAAAGGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAAATCGCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6660#1 ----------------------------------------------------CCCAGGCT 8
consensus_6660#4 ------------------------------------------------------TATGCT 6
consensus_6660#0 CCGCACACACTTACACTGAGAAAGGGAGAGAAAGAGAAAGAGAAGCAGAAAACTTATTTT 60
consensus_6660#3 ------------------------------------------------------------
consensus_6660#2 -------------------------------------------------------ACGGC 5
consensus_6660#1 TTAACGATCTTCTGACTCACTTCCGGAAGCCGGATGT-AAAAAGACGGAAACAAAAAAAA 67
consensus_6660#4 CGGATAGCTGTTT-ACCCTTTTTTATTTTTTACATAC-ATACA-ACATACACACACACAT 63
consensus_6660#0 TGGTCTTATTTTCAAATCGCCTAGTGTGTAAGGATGTTAAATGAAAGTAGCAGTATAAAT 120
consensus_6660#3 ------------CAAATCGCCTAGTGTGTAAGGATGTTAAATGAAAGTAGCAGTATAAAT 48
consensus_6660#2 GAAATCACCGCGCCTACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAAC 65
* * * * * *
consensus_6660#1 ACTAAAACGATAGAAAAAGAAGAAGAATTAATGTTTGCAGAT---TATGC-TGCATGC-- 121
consensus_6660#4 AC--ATACAATTCAT--AGAAGAAGAATTAATGTTTGCAGAT---TATGC-TGCATGC-- 113
consensus_6660#0 GAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGT 180
consensus_6660#3 GAAGAAAAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGT 108
consensus_6660#2 GCAAAACAAGCAAACAAAAAACAACCAAAAACTGGTTTGAAA----ACCTCAACCTACCA 121
* * * * * * * * *
consensus_6660#1 -TGCTTATATGTTGCGTCATTAAGAATTAACACATACAAACACACACTTACACTGAGAAA 180
consensus_6660#4 -TGCTTATATGTTGCGTCATTAAGAATTAACACATACAAACACACACTTACACTGAGAAA 172
consensus_6660#0 GTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAA 240
consensus_6660#3 GTGGATGCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAA 168
consensus_6660#2 AAAAAAAAGAAAAGAAACACAAAACAAACAGACAAACAAATAAATGAAAATGCAATGACA 181
* * * * * * *
consensus_6660#1 GGG------AGAGCAAAGAGCAAAGAGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAA 234
consensus_6660#4 GAGGGAGAGAGAGAAAGAGAGAAAAGGAAGCAGAAAACTTATTTTTGGTCTTATTTTCAA 232
consensus_6660#0 ATGCACTCTTGAAGGAAAAAAATACGAATATGCAAAACTGATTTACTGAGCAACCACTAC 300
consensus_6660#3 ATGCACTCTTGAAGGAAAAAAATACGAATATGCAAAACTGGTTTGAAAACC--TCAACCT 226
consensus_6660#2 AAACAACAAAGAAGCAAAAACACACTCACACACACAAGAAATCGTAGTAGTAACAAAGAG 241
** * * * * * ** *
consensus_6660#1 AT-CGCCTAGTGTGTAAGGATGTTAAAT-----GAANAGTAGCAGTATANNNATGAAGAA 288
consensus_6660#4 AT-CGCCT---------------------------------------------------- 239
consensus_6660#0 AC-CGCTCAGCAGGCGGGAAACGGAAAA-----GAGAGACAGAAGAGAAAAGCTTAAAGC 354
consensus_6660#3 AC-CAAAAAAAAGAAAAGAAACACAAAA-----CAAACAGACAAACAAATAAATGAAAAT 280
consensus_6660#2 AGACAAACAAAATGCAGAAACGTTGTAGCCTGTAAGGATTGATAATGGGATGTTGAAATC 301
* *
consensus_6660#1 AAAATACACAAAGCATGATCATGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGGAT 348
consensus_6660#4 ------------------------------------------------------------
consensus_6660#0 TCTCCAGCTAGAGGGAGACCGCAGTAACCCTACCCGGCGAAGGAAGTAGCAGGCAGAAGC 414
consensus_6660#3 GCAATGACAAAACA---------------------------------------------- 294
consensus_6660#2 GAAAAAAGGGAAGAGAGCGCGAGAGAGAGAGAGCGTGAGTGGGAGAGGGAAGGACAGTTA 361
consensus_6660#1 GCATGTTTGGTAGTTACACGTTGAAGGCTCACAGGAAACCGGCGTAGGAATAAAATGCAC 408
consensus_6660#4 ------------------------------------------------------------
consensus_6660#0 GAGATGTGCGATTCGTAGTGGCCGAGAATTCGAGAAAGTAGTAGTGAACACATACACAAA 474
consensus_6660#3 ------------------------------------------------------------
consensus_6660#2 AATGAAGATGAAAAATGAGAAAAAAAGAACCTTTAGCAGCTAAGTGAAACGAAGAAACGC 421
consensus_6660#1 TCTTGCAAGCGAAACAACATACGAATATGCAAACACTGACTTCTACTCGANCAACCACTA 468
consensus_6660#4 ------------------------------------------------------------
consensus_6660#0 CATACGTACACACACACATACATACACACATGAAACACAAAAACACCTAAAAGTTAAGAT 534
consensus_6660#3 ------------------------------------------------------------
consensus_6660#2 AAACAAAACAAAACAGATGAAACACGGAACGGCGAAATCACCGCGCCTACTGTTGTAAGC 481
consensus_6660#1 CACCGCTCANCAGCGCGGCGNAAACGGCNAAGCAGAGACNNNCAAGAGAAACNCAGCTTA 528
consensus_6660#4 ------------------------------------------------------------
consensus_6660#0 GTTAGTTGCAGACACCGTGTCGAGAAAATGTAGAGTGCGGAACGGCGAAATCACCGCGCC 594
consensus_6660#3 ------------------------------------------------------------
consensus_6660#2 GCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAACAAAAAACAACCA 541
consensus_6660#1 NACAGCTCCTCCAGCTACAGGGAGACCCGCAGTAAACCCCTACCCGGCGCANCGGNACAG 588
consensus_6660#4 ------------------------------------------------------------
consensus_6660#0 TACTGTTGTAAGCGCAGATAGAAGTAGTAGATTAAAATTGAGAAACGCAAAACAAGCAAA 654
consensus_6660#3 ------------------------------------------------------------
consensus_6660#2 AAAACTGGTTTGAAAACCTCAACCTACCAAAAAAAAGAAAAGAAACACAAAACAAACAGA 601
consensus_6660#1 TACCCAGCGCCNCANGCGAGAATGTGCGATCGCAACNGGCACCGACGCAACTCCNAGCAC 648
consensus_6660#4 ------------------------------------------------------------
consensus_6660#0 CAAAAAACAACCCAAAACTGGGTTGAAAACCT---------------------------- 686
consensus_6660#3 ------------------------------------------------------------
consensus_6660#2 CAAACAAATAAATGAAAATGCAATGACAAAACA--------------------------- 634
consensus_6660#1 AANGTACGTCACGTGAACACATACACAACAC 679
consensus_6660#4 -------------------------------
consensus_6660#0 -------------------------------
consensus_6660#3 -------------------------------
consensus_6660#2 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||