These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 988 fasta sequence [GTGCGCTGTACCATAACCGCCACAGTAACCGTGTAAGGATAAGAAAGAGGGCAATCAATATGTACCGGATAGGGTGGAACTGTTCCAAGCAGCTTATGCACGCGATGGAACAGGAAAGGATTCTGTTTTTTTTCGTTCGTTTAAAGTAAAAGCAAAGGGCAGCAAAGTATTTGNATTTTCATTGTTTTGTTCGAGGGGGGAAGGGAATAACATTCCTACTTGCAGTTTGTTTTGTCACCCACTTCCAACCGCATCAATCGCACAATCAATGACAATAGAACGCAGCATAAAAAGCAACGCACACCTACCGCACGACCGCACCAATAGGAAAGTATTAAAATCCGAACGAAACTGTTCCAATCGGATTTATGATCTGCCAGAACCGATTGAAGCAAAGGTACACGCAGCAACTACTACTACTACTACTACCACTACTACTATTACTACCACTCTCGTGGAGCAGTAGAAAAGCATACTTTAGAGAAGCATTATGTAGGCAACATTACAAAAAAAACGAATAAATACAGAAAATAGCAAACTAAAAAACGCGCACGAACAATCCTCAACATAGTGAGTAGCGAGCAGTGAAGGGCAGATGTGTCGGGACACGCGGCTATACGCGTATGTGTGTATGTGAGTAATAGTTTGAGTTAGGATGAGGATCAGCAGAGCATGTGTGTGTGTGTGTGGGTGTGGAGTAAAACTAGTAGAGATACTTTACAATCAATTAGCTAGCGGTTTTGGTGGGAACCTGTTGGACAGTTCAGCAGGTTCAACACTCTGGGAGTTAAAAGTGCCCAACAAATCCTCCCCCACTTCCTCCCTTTCACCCCCTCGATTACGATATGGTTACGTGTGTGTGTGTTTAGAATGTGTTTAGTGAAACTCTGGCGCAAACGCTAAATGGAAAATTGCATGCGCGTGTGCATGTTGCTCTGTTTGTATGTTTGCATACCTTTGGTGTGCCGGCGCTTGGCCGGCNATATTT] [+] EMBL BX628328 [GTGCGCTGTACCATAACCGCCACAGTAACCGTGTAAGGATAAGAAAGAGGGCAATCAATATGTACCGGATAGGGTGGAACTGTTCCAAGCAGCTTATGCACGCGATGGAACAGGAAAGGATTCTGTTTTTTTTCGTTCGTTTAAAGTAAAAGCAAAGGGCAGCAAAGTATTTGNATTTTCATTGTTTTGTTCGAGGGGGGAAGGGAATAACATTCCTACTTGCAGTTTGTTTTGTCACCCACTTCCAACCGCATCAATCGCACAATCAATGACAATAGAACGCAGCATAAAAAGCAACGCACACCTACCGCACGACCGCACCAATAGGAAAGTATTAAAATCCGAACGAAACTGTTCCAATCGGATTTATGATCTGCCAGAACCGATTGAAGCAAAGGTACACGCAGCAACTACTACTACTACTACTACCACTACTACTATTACTACCACTCTCGTGGAGCAGTAGAAAAGCATACTTTAGAGAAGCATTATGTAGGCAACATTACAAAAAAAACGAATAAATACAGAAAATAGCAAACTAAAAAACGCGCACGAACAATCCTCAACATAGTGAGTAGCGAGCAGTGAAGGGCAGATGTGTCGGGACACGCGGCTATACGCGTATGTGTGTATGTGAGTAATAGTTTGAGTTAGG ] [+] EMBL BX625013 [ gGTCACCCACTTCCAACCGCATCAATCGCACAATCAATGACAATAGAACGCAGCATAAAAAGCAACGCACACCTACCGCACGACCGCACCAATAGGAAAGTATTAAAATCCGAACGAAACTGTTCCAATCGGATTTATGATCTGCCAGAACCGATTGAAGCAAAGGTACACGCAGCAACTACTACTACTACTACTACCACTACTACTATTACTACCACTCTCGTGGAGCAGTAGAAAAGCATACTTTAGAGAAGCATTATGTAGGCAACATTACAAAAAAAACGAATAAATACAGAAAATAGCAAACTAAAAAACGCGCACGAACAATCCTCAACATAGTGAGTAGCGAGCAGTGAAGGGCAGATGTGTCGGGACACGCGGCTATACGCGTATGTGTGTATGTGAGTAATAGTTTGAGTTAGGATGAGGATCAGCAGAGCATGTGTGTGTGTGTGTGGGTGTGGAGTAAAACTAGTAGAGATACTTTACAATCAATTAGCTAGCGGTTTTGGTGGGAACCTGTTGGACAGTTCAGCAGGTTCAACACTCTGGGAGTTAAAAGTGCCCAACAAATCCTCCCCCACTTCCTCCCTTTCACCCCCTCGATTACGATATGGTTACGTGTGTGTGTGTTTAGAATGTGTTTAGTGAAACTCTGGCGCAAACGCTAAATGGAAAATTGCATGCGCGTGTGCATGTTGCTCTGTTTGTATGTTTGCATACCTTTGGTGTGCCGGCGCTT ] [+] EMBL BX625767 [ TTTCACCCCCTCTATTACGATATGGTTACGTGTGTGTGTGTTNANAATGTGTTTACTGAAACTCTGGCGCATACGCTAAATGGAAAATTGCATGCGCGTGTGCATGTTGCTCTGNTTGTATGNTTGCATACCTTTGGTGTGCCGGCGCTTGGCCGGCNATATTT] consensusID : consensus_6663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [ACAGTCTCCAGCCAGGTTCAACACTCTGGGGTNAAAAAGTGCCCAACAAATACGTCCCCCATTCCTCCCTTTCACCCCTCGATTACGATATGGTTACGTGTGTGTAGTGTTAGAATGTGTTTAGTGAAACTCTGGCGCAAACGCTAAATGGAACAATTGCATGCGCGTGTGCATGTTGCTCTGTTGTATGTTGCGATACCTTTGGTGTGCCGGCGCTTGGCCGGCGATATTTACCAATTAACGAGGNAGCTAGGGCAGACTTCCATTCAACCACTTAACCAATTCCAGGTATGGCTCANGTAGAAGGCAGGGAAGCCATGGGGAAAAAANAAGGGGATCTTCAGCACTGTGCGACAGGGCGCCAAGCAACGGAAAGAGAAAACCCACAAGAGNAAGCTAAGCGCCACA] [+] EMBL AL930705 [ACAGTCTCCAGCCAGGTTCAACACTCTGGGGTNAAAAAGTGCCCAACAAATACGTCCCCCATTCCTCCCTTTCACCCCTCGATTACGATATGGTTACGTGTGTGTAGTGTTAGAATGTGTTTAGTGAAACTCTGGCGCAAACGCTAAATGGAACAATTGCATGCGCGTGTGCATGTTGCTCTGTTGTATGTTGCGATACCTTTGGTGTGCCGGCGCTTGGCCGGCGATATTTACCAATTAACGAGGNAGCTAGGGCAGACTTCCATTCAACCACTTAACCAATTCCAGGTATGGCTCANGTAGAAGGCAGGGAAGCCATGGGGAAAAAANAAGGGGATCTTCAGCACTGTGCGACAGGGCGCCAAGCAACGGAAAGAGAAAACCCACAAGAGNAAGCTAAGCGCCACA] consensusID : consensus_6663#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence [AATCGCACGAGGGTNANNTTATGCACGCGATGGAACAGCCAAAGGATTCTGTTTTTTTTCGTTCGTTTAAAGCAAAAGCAAAGGGCAGCAAAGGTATTTGATTTCATTGTTTTGTTCGACGGGGGGACAGGGCAATAACATTCCTACTTGCAGTTATGTTATTGTCACCCACTTCCAACCGCATCAATCGCACAAATCAACTGACAATAGAACGCAGCAGTAAAAAGCAACGCACACCTAACCGCACAGACCGCACCAATAGAGANAGGTATTAAAATCCGAACGAAANCATGTATCCAATCTGNGATTTNTA] [+] EMBL BX469253 [AATCGCACGAGGGTNANNTTATGCACGCGATGGAACAGCCAAAGGATTCTGTTTTTTTTCGTTCGTTTAAAGCAAAAGCAAAGGGCAGCAAAGGTATTTGATTTCATTGTTTTGTTCGACGGGGGGACAGGGCAATAACATTCCTACTTGCAGTTATGTTATTGTCACCCACTTCCAACCGCATCAATCGCACAAATCAACTGACAATAGAACGCAGCAGTAAAAAGCAACGCACACCTAACCGCACAGACCGCACCAATAGAGANAGGTATTAAAATCCGAACGAAANCATGTATCCAATCTGNGATTTNTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6663#0 GTGCGCTGTACCATAACCGCCACAGTAACCGTGTAAGGATAAGAAAGAGGGCAATCAATA 60 consensus_6663#2 ------------------------------------------------------------ consensus_6663#1 -----------------------------------------------------------A 1 consensus_6663#0 TGTACCGGATAGGGTGGAACTGTTCCAAG--CAGCTTATGCACGCGATGGAACAGG-AAA 117 consensus_6663#2 -----------------AATCGCACGAGGGTNANNTTATGCACGCGATGGAACAGCCAAA 43 consensus_6663#1 CAGTCTCCAGCCAGGTTCAACACTCTGGGGTNAAA--AAGTGCCCAACAAATACGTCCCC 59 * * * * * * * * * * * consensus_6663#0 GGATTCTGTTTTTTTTCGTTCGTTTAAAGTAAAAGCAAAGG---GCAGCAAAG-TATTTG 173 consensus_6663#2 GGATTCTGTTTTTTTTCGTTCGTTTAAAGCAAAAGCAAAGG---GCAGCAAAGGTATTTG 100 consensus_6663#1 CATTCCTCCCTTTCACCCCTCGATTACGATATGGTTACGTGTGTGTAGTGTTAGAATGTG 119 * ** *** * *** *** * * * * ** ** ** consensus_6663#0 NATTTTCATTGTTTTGTTCGAGGGGGGAA---GGGAATAACATTCCTACTTGCA----GT 226 consensus_6663#2 A--TTTCATTGTTTTGTTCGACGGGGGGACAGGGCAATAACATTCCTACTTGCA----GT 154 consensus_6663#1 TTTAGTGAAACTCTGGCGCAAACGCTAAATGGAACAATTGCATGCGCGTGTGCATGTTGC 179 * * * * * * * * * *** *** * **** * consensus_6663#0 T-TGTT-----TTGTCACCCACTTCCAACCGCATCAATCGCACAA-TCAA-TGACAATAG 278 consensus_6663#2 TATGTTA----TTGTCACCCACTTCCAACCGCATCAATCGCACAAATCAACTGACAATAG 210 consensus_6663#1 TCTGTTGTATGTTGCGATACCTTTGGTGTGCCGGCGCTTGGCCGGCGATATTTACCAATT 239 * **** *** * * ** * * * * * * * ** * consensus_6663#0 AACGCAGCA-TAAAAAGCAACGCACACCTA-CCGCAC-GACCGCACCAATAGGAAA--GT 333 consensus_6663#2 AACGCAGCAGTAAAAAGCAACGCACACCTAACCGCACAGACCGCACCAATAGAGANAGGT 270 consensus_6663#1 AACGAGGNAGCTAGGGCAGACTTCCATTCAACCACTTAACCAATTCCAGGTATGGCTCAN 299 **** * * * ** ** * ** * * *** consensus_6663#0 ATTAAAATCCGAACGAAACTGTTCCAATCGGATTTATGATCTGCCAGAACCGATTGAAGC 393 consensus_6663#2 ATTAAAATCCGAACGAAANCATGT--ATCCAATCTGNGATTTNTA--------------- 313 consensus_6663#1 GTAGAAGGC--AGGGAAGCCATGGGGAAAAAANAAGGGGATCTTCAGCACTGTGCGACAG 357 * ** * * *** * * * * consensus_6663#0 AAAGGTACACGCAGCAACTACTACTACTACTACTACCACTACTACTATTACTACCACTCT 453 consensus_6663#2 ------------------------------------------------------------ consensus_6663#1 GGCGCCAAGCAACGGAAAGAGAAAACCCACAAGAGNAAGCTAAGCGCCACA--------- 408 consensus_6663#0 CGTGGAGCAGTAGAAAAGCATACTTTAGAGAAGCATTATGTAGGCAACATTACAAAAAAA 513 consensus_6663#2 ------------------------------------------------------------ consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 ACGAATAAATACAGAAAATAGCAAACTAAAAAACGCGCACGAACAATCCTCAACATAGTG 573 consensus_6663#2 ------------------------------------------------------------ consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 AGTAGCGAGCAGTGAAGGGCAGATGTGTCGGGACACGCGGCTATACGCGTATGTGTGTAT 633 consensus_6663#2 ------------------------------------------------------------ consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 GTGAGTAATAGTTTGAGTTAGGATGAGGATCAGCAGAGCATGTGTGTGTGTGTGTGGGTG 693 consensus_6663#2 ------------------------------------------------------------ consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 TGGAGTAAAACTAGTAGAGATACTTTACAATCAATTAGCTAGCGGTTTTGGTGGGAACCT 753 consensus_6663#2 ------------------------------------------------------------ consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 GTTGGACAGTTCAGCAGGTTCAACACTCTGGGAGTTAAAAGTGCCCAACAAATCCTCCCC 813 consensus_6663#2 ------------------------------------------------------------ consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 CACTTCCTCCCTTTCACCCCCTCGATTACGATATGGTTACGTGTGTGTGTGTTTAGAATG 873 consensus_6663#2 ------------------------------------------------------------ consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 TGTTTAGTGAAACTCTGGCGCAAACGCTAAATGGAAAATTGCATGCGCGTGTGCATGTTG 933 consensus_6663#2 ------------------------------------------------------------ consensus_6663#1 ------------------------------------------------------------ consensus_6663#0 CTCTGTTTGTATGTTTGCATACCTTTGGTGTGCCGGCGCTTGGCCGGCNATATTT 988 consensus_6663#2 ------------------------------------------------------- consensus_6663#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||