These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6664#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 888 fasta sequence [CCGGTTTCGTGTTGTTAAATTCGTACCGCTTATTATCGTTACTAAATCGTTGCTAAAAACTGCCGCCAAAAGCATGGGAAATAGTGATACGGACAGCACAACGTCCGAATCGGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTTCAATCCACTGAAAGCACTGTATTCCGCCAAGCTCAAGGTGCCGGTTCCAAAGGCCCGCCTGCACGACAATATAAGCTCGCTGGAAGGGAAGCAACTCACGTTGGGCGGCTTTACGGAAAAGTTCGACGAGGCACGTATCA-GACAGATCCGAGCGGCCCAAAACAAACCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTGACACGCGTCAGGTCCATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTCCATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCAGGTGTGCTCGAGCTGTTCGACAAGCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGACAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTTGCGGAGGCTCGGGATCGTGCTGCCCGGGCTGAAGGTGCGCCCGGCGGACGGTAAAAAGAATGTGATAATCACCCGCAAGGTGCCTCAGTTGTTGGTTAAGGGCGAAATGGTGGTGCTGGTAACTCTCGAGCCGGGCGAACCGCAGGCAAGTACTTCGAA-AGGGACGAAATAAAACGCACCTATCTGTTTTCTGTAATCGGATAATGTTACCAT] [+] EMBL BM595406 [CCGGTTTCGTGTTGTTAAATTCGTACCGCTTATTATCGTTACTAAATCGTTGCTAAAAACTGCCGCCAAAAGCATGGGAAATAGTGATACGGACAGCACAACGTCCGAATCGGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTTCAATCCACTGAAAGCACTGTATTCCGCCAAGCTCAAGGTGCCGGTTCCAAAGGCCCGCCTGCACGACAATATAAGCTCGCTGGAAGGGAAGCAACTCACGTTGGGCGGCTTTACGGAAAAGTTCGACGAGGCACGTATCA GACAGATCCGAGCGGCCCAAAACAAACCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTGACACGCGTCAGGTCCATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTATCCATACGCAAACAGAAGGGTGTCCGGGGGCATGTTTCGGGTGTGCTCGAGCTGTTCGACAAGCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGCCAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCG ] [+] EMBL CNS097E0 [ GTGTTGTTGAATTCGTTCCGCT TTAT ATCGTTACTAAAAACTGCCGCCAAAAGCATGGGAAATAGTGATACGGACAGCACAACGTCCGAATCGGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGATTCAATCCACTGAAAGCACTGTATTCCGCCAAGCTGAAGGTGCCGGTTCCAAAGGCCCGCCTGCACGACAATATAAGCTCGCTGGAAGGGAAGCAACTCACGTTGGGCGGCTTTACGGAAAAGTTCGACGAGGCACGTATCATAACAGATCCGAGCGGCCCAAAACAAGCCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTGACACGCGTCAGGTCCATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTCCATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCAGGTGTGCTCGAGCTGTTCGAGCTGCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGACAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTTGCGGAGGCTCGGGATCGTGCTGCCCGGGCTGAAGGTGCGCCCGGCGGACGGTAAAAAGAATGTGATAATCACCCGCAAGGTGCCTCAGTTGTTGGTTAAGGGCGAAATGGTGGTGCTGGTAACTCTCGAGCCGGGCGAACCGCAGGCAAGTACTTCGAA AGGGACGAAATAAAACGCACCTATCTGTTTTCTGTAATCGGATAATGTTACCAT] [-] EMBL CNS097E1 [ accgAACGAAAGGCGACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTAACACGCGTCAGGTCCATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTCCATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCAGGTGTGCTCGAGCTGTTCGACAAGGACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGACAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTTGCGGAGGCTCGGGATCGTGCTGCCCGGGCTGAAGGTGCGCCCGGCGGACGGTAAAAAGAATGTGATAATCACCCGCAAGGTGCCTCAGTTGTTGGTTAAGGGCGAAATGGTGGTGCTGGTTATTCTCGAGCCGGGCGAACCGCAGGCAAGTACTTCGAACAGGGACGAAATAAAACGCACCTATCTGTTTTCTGTAAT ] consensusID : consensus_6664#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [ACCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTGACACGCGTCAGGTCTATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTCCATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCGGGTGTGCTCGAGCTGTTCGACAAGCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGCCAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTTGCGGCGGCTCGGGATCGTGCTGCCCGAGCTGAAGGTGCGCCCGGCGGACGGGAAAAAGAATGTGATAATCACCCGCAAGGTGCCTCAGTTGCTGGTTAAGGGCGAAATGGTGGTGCTGGTAATGCTCGAGCCGGGCGAACCGCAGCGCACAGTTCCTTCATCAGCTCTCCAAACCCTCCCAGAGCTCGACGCTCAGAAACA] [+] EMBL BM645813 [ACCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTGACACGCGTCAGGTCTATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTCCATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCGGGTGTGCTCGAGCTGTTCGACAAGCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGCCAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTTGCGGCGGCTCGGGATCGTGCTGCCCGAGCTGAAGGTGCGCCCGGCGGACGGGAAAAAGAATGTGATAATCACCCGCAAGGTGCCTCAGTTGCTGGTTAAGGGCGAAATGGTGGTGCTGGTAATGCTCGAGCCGGGCGAACCGCAGCGCACAGTTCCTTCATCAGCTCTCCAAACCCTCCCAGAGCTCGACGCTCAGAAACA] consensusID : consensus_6664#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence [NCAGCAGATCGCCAGGTTATATTCGTACCGGCTTATTATCCGCTTACTAAATCGTTGCTAAAAACTGCCGCCAAAAGCATGGGAAATAGTGATACGGACAGCACAACGTCCGAATCGGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTTCAATCCACTGAAAGCACTGTATTCCGCCAAGCTCAAGGTGCCGGTTCCAAAGGCCC] [+] EMBL BX466289 [NCAGCAGATCGCCAGGTTATATTCGTACCGGCTTATTATCCGCTTACTAAATCGTTGCTAAAAACTGCCGCCAAAAGCATGGGAAATAGTGATACGGACAGCACAACGTCCGAATCGGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTTCAATCCACTGAAAGCACTGTATTCCGCCAAGCTCAAGGTGCCGGTTCCAAAGGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6664#0 ------------------------------------------------------------ consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 ACCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGT 60 consensus_6664#0 ------------------------------------------------------------ consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 GACACGCGTCAGGTCTATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTT 120 consensus_6664#0 ------------------------------------------------------------ consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 CGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTC 180 consensus_6664#0 ---------CCGGTT--TCGTG--TTGTTAAATTC-----GTAC-CG-CTTATTATCG-- 38 consensus_6664#2 ---------NCAGCAGATCGCC--AGGTTATATTC-----GTAC-CGGCTTATTATCCGC 43 consensus_6664#1 CATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCGGGTGTGCTCGAGCTGTTCGACAA 240 * * * * * ** ** * ** * ** consensus_6664#0 TTACTAAATCGTTGCTAAAAACTGC---CGCCAAAAGCATGGGAAATAGTGATACGG--A 93 consensus_6664#2 TTACTAAATCGTTGCTAAAAACTGC---CGCCAAAAGCATGGGAAATAGTGATACGG--A 98 consensus_6664#1 GCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTA 300 *** * * * ** * * * ** *** * ** *** * * consensus_6664#0 CAGCACAA--CGTCCGAATC-GGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTT 150 consensus_6664#2 CAGCACAA--CGTCCGAATC-GGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTT 155 consensus_6664#1 CAGCGAGAACCGCCAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTT 360 **** * ** * * *** ****** * * ** * ** * * ** * ***** consensus_6664#0 CAATCCACTGAAAGCACTGTATTCCGCCAAGCTCAAGGTGCCGGTTCCAAAGGCCCGCCT 210 consensus_6664#2 CAATCCACTGAAAGCACTGTATTCCGCCAAGCTCAAGGTGCCGGTTCCAAAGGCCC---- 211 consensus_6664#1 GCGGCGGCTC--GGGATCGTGCTGC-CCGAGCTGAAGGTGCGCCCGGCGGACGGGAAAAA 417 * ** * * ** * * ** **** ******* * * * consensus_6664#0 GCACGACAATATAAGCTCGCTGGAAGGGAAGCAACTCACGTTGGGCGGCTTTACGGAAAA 270 consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 GAATGTGATAATCACCCGCAAGGTGCCTCAGTTGCTGGTTAAGGGCGAAATGGTGGTGCT 477 consensus_6664#0 GTTCGACGAGGCACGTATCAGACAGATCCGAGCGGCCCAAAACAAACCTAAGCTTGCAGA 330 consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 GGTAATGCTCGAGCCGGGCGAACCGCAGCGCACAGTTCCTTCATCAGCTCTCCAAACCCT 537 consensus_6664#0 AAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTGACACGCGTCAGGTC 390 consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 CCCAGAGCTCGACGCTCAGAAACA------------------------------------ 561 consensus_6664#0 CATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGG 450 consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 ------------------------------------------------------------ consensus_6664#0 CCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTCCATACGCAAACAGAA 510 consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 ------------------------------------------------------------ consensus_6664#0 GGGTGTCCGGGGGCACGTTTCAGGTGTGCTCGAGCTGTTCGACAAGCACTGGAACCTGGC 570 consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 ------------------------------------------------------------ consensus_6664#0 GCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGACA 630 consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 ------------------------------------------------------------ consensus_6664#0 GCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTTGCGGAGGCTCGGGAT 690 consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 ------------------------------------------------------------ consensus_6664#0 CGTGCTGCCCGGGCTGAAGGTGCGCCCGGCGGACGGTAAAAAGAATGTGATAATCACCCG 750 consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 ------------------------------------------------------------ consensus_6664#0 CAAGGTGCCTCAGTTGTTGGTTAAGGGCGAAATGGTGGTGCTGGTAACTCTCGAGCCGGG 810 consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 ------------------------------------------------------------ consensus_6664#0 CGAACCGCAGGCAAGTACTTCGAAAGGGACGAAATAAAACGCACCTATCTGTTTTCTGTA 870 consensus_6664#2 ------------------------------------------------------------ consensus_6664#1 ------------------------------------------------------------ consensus_6664#0 ATCGGATAATGTTACCAT 888 consensus_6664#2 ------------------ consensus_6664#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||