cluster # 6665

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Anopheles gambiae
cluster # 6665 cluster # 6665 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6665#0 length = 873 sequences # 4

consensus_6665#1 length = 575 sequences # 1

consensusID : consensus_6665#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 873
fasta sequence

                              [CCGGTTCGCGAATGTCATGCAGCGATTCATTGGTTGGAAGTGGCACAAGCTCGGATAAAATCGACAGTCAACCGCAGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCACCAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCGGCAATTCCAGGCGATGGGCTGCTGTCGGTGGTATCTGGTGGTGGGATTAGGTTTGGGAAAAGTAGGAACAGGATTGATATTTCTGTTCGCTTGGAGGGACATTTTCGACATACTGGTGACAGAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAACGATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGAT-GGAACCGTTGCGCAAGTTAGTCTGCCCCACCAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCGCACGTTCAACGTTACCCGACGTGCTAGCGAAGT]

[+] EMBL BM611090             [CCGGTTCGCGAATGTCATGCAGCGATTCATTGGTTGGAAGTGGCACAAGCTCGGATAAAATCGACAGTCAACCGCAGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCACCAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCGGCAATTCCAGGCGATGGGCTGCTGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX622655             [                     GCGATTCATTGGTTGGAAGTGGCACAAGCTCGGATAAAATCGACAGTCAACCGCAGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCACCAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCGGCAATTCCAGGCGATGGGCTGCTGTCGGTGGTATCTGGTGGTGGGATTAGGTTTGGGAAAAGTAGGAACAGGATTGATATTTCTGTTCGCTTGGAGGGACATTTTCGACATACTGGTGACAGAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAACGATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGAT GGAACCGTTGCGCAAGTTAGTCTGCCCCACCAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCGCACGTTCAACGTTACCCGACGTGCTAGCGAAGT]
[+] EMBL BX615764             [                                     AAGTGGCACAAGCTCGGATAAAATCGACAGTCAACCGCAGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCACCAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCGGCAATTCCAGGCGATGGGCTGCTGTCGGTGGTATCTGGTGGTGGGATTAGGTTTGGGAAAAGTAGGAACAGGATTGATATTTCTGTTCGCTTGGAGGGACATTTTCGACATACTGGTGACAGAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGA                                                                                                                                                                 ]
[+] EMBL BX625465             [                                                                           AGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCACCAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCGGCAATTCCAGGCGATGGGCTGCTGTCGGTGGTATCTGGTGGTGGGATTAGGTTTGGGAAAAGTAGGAACAGGATTGATATTTCTGTTCGCTTGGAGGGACATTTTCGACATACTGGTGACAGAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAACGATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGATGGGAACCGTTGCGCNAGTTAGTCTG CCCACCAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCGCACGTTCAACGTTACCCGACGT           ]




>consensus_6665#0
CCGGTTCGCGAATGTCATGCAGCGATTCATTGGTTGGAAGTGGCACAAGCTCGGATAAAA
TCGACAGTCAACCGCAGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCAC
CAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCG
GCAATTCCAGGCGATGGGCTGCTGTCGGTGGTATCTGGTGGTGGGATTAGGTTTGGGAAA
AGTAGGAACAGGATTGATATTTCTGTTCGCTTGGAGGGACATTTTCGACATACTGGTGAC
AGAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGA
GCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCA
TCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGA
GGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTT
CTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCAT
CAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGT
GCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAAC
GATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGATGGAACCGTTGCGCAAGTT
AGTCTGCCCCACCAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCG
CACGTTCAACGTTACCCGACGTGCTAGCGAAGT

consensusID : consensus_6665#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [AGAATCGCCCGAGGTNTTCTAAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAACGATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGATGGAACCGTTGCGCAAGTTAGTCTGGCCCACAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCGCACGTTCAACGTTACCC]

[+] EMBL AL930669             [AGAATCGCCCGAGGTNTTCTAAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAACGATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGATGGAACCGTTGCGCAAGTTAGTCTGGCCCACAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCGCACGTTCAACGTTACCC]




>consensus_6665#1
AGAATCGCCCGAGGTNTTCTAAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAG
AATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATG
CGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTC
AGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGT
CATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTA
CCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCC
ACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGA
CCGTTACCGTGACTAGAACGATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGA
TGGAACCGTTGCGCAAGTTAGTCTGGCCCACAAACGTCGCAGTGTGGCATGTCAGGATGA
ACGGCTTGCCTACTTTCGCACGTTCAACGTTACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6665#0      CCGGTTCGCGAATGTCATGCAGCGATTCATTGGTTGGAAGTGGCACAAGCTCGGATAAAA 60
consensus_6665#1      ------------------------------------------------------------
                                                                                  

consensus_6665#0      TCGACAGTCAACCGCAGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCAC 120
consensus_6665#1      ------------------------------------------------------------
                                                                                  

consensus_6665#0      CAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCG 180
consensus_6665#1      ------------------------------------------------------------
                                                                                  

consensus_6665#0      GCAATTCCAGGCGATGGGCTGCTGTCGGTGGTATCTGGTGGTGGGATTAGGTTTGGGAAA 240
consensus_6665#1      ------------------------------------------------------------
                                                                                  

consensus_6665#0      AGTAGGAACAGGATTGATATTTCTGTTCGCTTGGAGGGACATTTTCGACATACTGGTGAC 300
consensus_6665#1      ------------------------------------AGAATCGCCCGAGGTNTT-----C 19
                                                           **      ***  *  *     *

consensus_6665#0      AGAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGA 360
consensus_6665#1      TAAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGA 79
                        **********************************************************

consensus_6665#0      GCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCA 420
consensus_6665#1      GCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCA 139
                      ************************************************************

consensus_6665#0      TCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGA 480
consensus_6665#1      TCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGA 199
                      ************************************************************

consensus_6665#0      GGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTT 540
consensus_6665#1      GGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTT 259
                      ************************************************************

consensus_6665#0      CTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCAT 600
consensus_6665#1      CTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCAT 319
                      ************************************************************

consensus_6665#0      CAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGT 660
consensus_6665#1      CAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGT 379
                      ************************************************************

consensus_6665#0      GCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAAC 720
consensus_6665#1      GCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAAC 439
                      ************************************************************

consensus_6665#0      GATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGATGGAACCGTTGCGCAAGTT 780
consensus_6665#1      GATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGATGGAACCGTTGCGCAAGTT 499
                      ************************************************************

consensus_6665#0      AGTCTGCCCCACCAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCG 840
consensus_6665#1      AGTCTGGCCCAC-AAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCG 558
                      ****** ***** ***********************************************

consensus_6665#0      CACGTTCAACGTTACCCGACGTGCTAGCGAAGT 873
consensus_6665#1      CACGTTCAACGTTACCC---------------- 575
                      *****************