These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 739 fasta sequence [AACAAGCCACGGCTACTTTCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCACGGAATTGGTAAAACAAACGAATGGTGAAATGGCTACCATAACGCTCCCCAGCGCGGACTGTACGAAGTTTTGCCGCTTCTGTCTGTCAGAGATTAATCTGCTAAACGTGATCGGTCCCAGCGCGGTCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTAGTGAAAACCTATCTGAAGCTGGAGCTGGTTCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCTGCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCAGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAAAGCGAGGACGTATTGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGTGGAGGTGTACGAACCGCCGCCGGTGGTGCTGATCGACACCGGGAACAACGTGGTGGAGGTGAACACGGACGATCAGATCGTGCTGGAGGATGGC-AGTGTGGAGGGCGAAATCTAAACGAACAGGAGGAGGCAACAGATCGATGTGTACCATGTCGATGGTCAGCTGCAGCACATCGT-CATGG-AGGGTGGCACGTACATCGATTTACAGCCTTACCGGCCACCGAAACCAGCACCTGTACCAATCGTAACACCAGTACCACGATCACTACGTACTAATAATGTACTGAACACTTCCATCCCGAACCACGGTTCGC] [+] EMBL CNS08S6E [AACAAGCCACGGCTACTTTCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCACGGAATTGGTAAAACAAACGAATGGTGAAATGGCTACCATAACGCTCCCCAGCGCGGACTGTACGAAGTTTTGCCGCTTCTGTCTGTCAGAGATTAATCTGCTAAACGTGATCGGTCCCAGCGCGGTCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTAGTGAAAACCTATCTGAAGCTGGAGCTGGTTCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCTGCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCAGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAAAGCGAGGACGTATTGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGTGGAGGTGTACGAACCGCCGCCGGTGGTGCTGATCGACACCGGGAACAACGTGGTGGAGGTGAACACGGACGATCAGATCGTGCTGGAGGATGGC AGTGTGGAGGGCGAAATCTAAACGAACAGGAGGAGGCAACAGATCGATGTGTACCATGTCGATGGTCAGCTGCAGCACATCGT CATGG AGGGTGGCACGTACATCGATTTACAGCCTTACCGGCCACCGAAACCAGCACCTGTACCAATCGTAACACCAGTACCACGATCACTACGTACTAATAATGTACTGAACACTTCCATCCCGAACCACGGTTCGC] [+] EMBL BM592921 [ ccgGCCACGGCTACTTCCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCACGGGATTGGTAATACAAACGAATGGTGAAATGGCTACCATAACGCT CGCGGACTGTACGAAGTTTTGCCGCTTCTGTCTGTCGGAGATTAATCTGCTGAACGTGATCGGTCCCAGCGCGGCCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTGGTGAAAACCTATCTGAAGCTGGAGCTGGTGCCCGCCAAGGACTTCCCAAGCGCGGTGTGTGAGATGTGTATCGCGCTGCTTCACGATTTCGACACGCTGTACCAGAACGTGCATGACCACCGGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAGAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGTGGAGGTATACGAACCGCCGCCGGTGGTGCTGATCGACACCGGGAACAACGTGGTGGAGGTGAACACGGACGATCAGATTGTGCTGGAGGATGGCAAGTGTGGAGGGCG AATCT AACGAACAGGAGGAGGC ACAGATCGACGTGTACCATGTCGATGGTCAGCTGCAGCACTTCGTCCATGGAAGGGTGGCACTTACATCGATTTACAGCCTTACCGGCCACCGAAACCAGCACCTGTACCAATCGTAACAC ] consensusID : consensus_6673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CCCGCTGACTTTACACACACACACACACATACCCTTAGGGGGGTAATTAATACTACAGCGTTCGATTACAGAATCTTCACGAAGCTCACGCCCGGCTTCGGGTGTATTGCTCGCATGTGCAGCTGATAGTCCTGCCGCTGGGAGAACAGCTTGTGGCAAATCGTACACTTGATGCCAAAGTTTTCATTGCTTATTCTGTGCACCTCGTACTCGTGCTTCTGGTACTGGAGCTTCGTGCGGTAGGACATGTCGCACAGGTTGCACTGAAACCGCTGGCCCTCGCTCGTGATGGTGACGGCCGAGCCCCCCGTCCGGGCCGGTTGGCTTTGGTTGTTGCTGCTGGCAACGGCGACACCATCCTGCGCGGGTGCCTTCGTGCAGCTGTGGTTGTAAAAGTTGGTTAGCTCGACAAACAGATTGCCGCAGGGGGACCAACGGTACAGATGATGGTTCGTCGGAGCAGCGGCCGTGTCGAGCTGCTGCACTTTCGGTCGTTGCATCTGGGACGACGATGGGCGCTGGCTGGCCGGTTCTCCGTTCAGCATCCGGGTTGGCGTGCCCGTCGGAACCAGTTGATAGGAGACTGTCGTGGATTTTTTAGAATAATGAGCCGCCCCAGCAGTTGCATTCGCTGCGTTGGTTCGCTTTCTACTCTGCATCTGCGAACCGTGGTTCGGGATGGAA] [+] EMBL CNS08KTW [CCCGCTGACTTTACACACACACACACACATACCCTTAGGGGGGTAATTAATACTACAGCGTTCGATTACAGAATCTTCACGAAGCTCACGCCCGGCTTCGGGTGTATTGCTCGCATGTGCAGCTGATAGTCCTGCCGCTGGGAGAACAGCTTGTGGCAAATCGTACACTTGATGCCAAAGTTTTCATTGCTTATTCTGTGCACCTCGTACTCGTGCTTCTGGTACTGGAGCTTCGTGCGGTAGGACATGTCGCACAGGTTGCACTGAAACCGCTGGCCCTCGCTCGTGATGGTGACGGCCGAGCCCCCCGTCCGGGCCGGTTGGCTTTGGTTGTTGCTGCTGGCAACGGCGACACCATCCTGCGCGGGTGCCTTCGTGCAGCTGTGGTTGTAAAAGTTGGTTAGCTCGACAAACAGATTGCCGCAGGGGGACCAACGGTACAGATGATGGTTCGTCGGAGCAGCGGCCGTGTCGAGCTGCTGCACTTTCGGTCGTTGCATCTGGGACGACGATGGGCGCTGGCTGGCCGGTTCTCCGTTCAGCATCCGGGTTGGCGTGCCCGTCGGAACCAGTTGATAGGAGACTGTCGTGGATTTTTTAGAATAATGAGCCGCCCCAGCAGTTGCATTCGCTGCGTTGGTTCGCTTTCTACTCTGCATCTGCGAACCGTGGTTCGGGATGGAA] consensusID : consensus_6673#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [AATGCCCGAGGGTNAGGCTACTTCCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCACGGGATTGGTAAAACAAACGAATGGTGAAATGGCTACCATAACGCTCCCCAGCGCAGACTGTACGAAGTTTTGCCGCTTCTGTCTGTCGGAGATTAATCTGCTGAACGTGATCGGTCCCAGCGCGGCCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTGGTGAAAACCTATCTGAAGCTGGAGCTGGTGCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCTGCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCGGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAAAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGCTGNGAGGTGTACGAACCGCCGCCGGCTGGTGCTGATCGACACCGGGAACAACGTGGTGGCAGGTGAACCACGGGACGCACTCAGACTTGCTGCCTGGNNNCGCACTGGCTCACGCTGCTGCGACGGGCGAANTCTAACGAACAGCGCACGGCANGCACAGATCGACTGCTGTACCAATGNTCCNACTCGCNTCCACGCTGCCACGCC] [+] EMBL AL930463 [AATGCCCGAGGGTNAGGCTACTTCCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCACGGGATTGGTAAAACAAACGAATGGTGAAATGGCTACCATAACGCTCCCCAGCGCAGACTGTACGAAGTTTTGCCGCTTCTGTCTGTCGGAGATTAATCTGCTGAACGTGATCGGTCCCAGCGCGGCCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTGGTGAAAACCTATCTGAAGCTGGAGCTGGTGCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCTGCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCGGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAAAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGCTGNGAGGTGTACGAACCGCCGCCGGCTGGTGCTGATCGACACCGGGAACAACGTGGTGGCAGGTGAACCACGGGACGCACTCAGACTTGCTGCCTGGNNNCGCACTGGCTCACGCTGCTGCGACGGGCGAANTCTAACGAACAGCGCACGGCANGCACAGATCGACTGCTGTACCAATGNTCCNACTCGCNTCCACGCTGCCACGCC] consensusID : consensus_6673#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [CCCAGCGCGGCCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTAGTGAAAACCTATCTGAAGCTGGAGCTGGTTCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCTGCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCGGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAAAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGTGGAGGTGTACGAACCGCCGCCGGTGGTGCTGATCGACACCGGGAACAACGTGGTGGAGGTGAACACGGACGATCAGATCGTGCTGGAGGATGGCAGTGTGGAGGGCGAATCTAACGAACAGGAGGAGGGTGGCACGTACATCGATTTACAGCCTTACCGGCCACCGAAACCAGCACCTGTACCAATCGTAACACCAGTACCACGATCACTACGTACTAATAATGTACTGAACACTTCCATCCCGAACCACGGTTCGCAGATGCAGAGTAG] [+] EMBL CNS08KTV [CCCAGCGCGGCCGAACAAGAATCTCACGCGGAGTTGTTCCGGCTAGTGAAAACCTATCTGAAGCTGGAGCTGGTTCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCTGCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCGGTACGCGCTGCGGTTGCTTCTGGAGACGCAGAAAAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCGAACCGAACCTGGTGGAGGTGTACGAACCGCCGCCGGTGGTGCTGATCGACACCGGGAACAACGTGGTGGAGGTGAACACGGACGATCAGATCGTGCTGGAGGATGGCAGTGTGGAGGGCGAATCTAACGAACAGGAGGAGGGTGGCACGTACATCGATTTACAGCCTTACCGGCCACCGAAACCAGCACCTGTACCAATCGTAACACCAGTACCACGATCACTACGTACTAATAATGTACTGAACACTTCCATCCCGAACCACGGTTCGCAGATGCAGAGTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6673#0 -----AACAAGCCACGGCTACTTTCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCA 55 consensus_6673#3 ------------------------------------------------------------ consensus_6673#2 AATGCCCGAGGGTNAGGCTACTTCCAGCGGCGTTTCGATTCGGCATCAAAAAACGAATCA 60 consensus_6673#1 -------CCCGCTGACTTTACACACACACACACACATACCCTTAGGGGGGTAATTAAT-A 52 consensus_6673#0 CGGAATTGGTAAAACAAACGAATGGTGAAATGGCTACCATAACGCTCCCCA-GCGCGGAC 114 consensus_6673#3 ------------------------------------------------------------ consensus_6673#2 CGGGATTGGTAAAACAAACGAATGGTGAAATGGCTACCATAACGCTCCCCA-GCGCAGAC 119 consensus_6673#1 CTACAGCGTTCGATTACA-GAATCTTCACGAAGCTCACGCCCGGCTTCGGGTGTATTGCT 111 consensus_6673#0 TGTACGAAGTTTTGCCGCTTCTGTCTGTCAGAGATTAATCTGCTAAACGTGATCGGTCCC 174 consensus_6673#3 ---------------------------------------------------------CCC 3 consensus_6673#2 TGTACGAAGTTTTGCCGCTTCTGTCTGTCGGAGATTAATCTGCTGAACGTGATCGGTCCC 179 consensus_6673#1 CGCATGTGCAGCTGATAGTCCTGCCGCTGGGAGAACAGCTTGTGGCAAATCGT-ACACTT 170 * consensus_6673#0 AGCGCGGTCGAACAAGAATCTCAC-GCGGAGTTGTTCCGGCTAGTGAAAACCTATCTGAA 233 consensus_6673#3 AGCGCGGCCGAACAAGAATCTCAC-GCGGAGTTGTTCCGGCTAGTGAAAACCTATCTGAA 62 consensus_6673#2 AGCGCGGCCGAACAAGAATCTCAC-GCGGAGTTGTTCCGGCTGGTGAAAACCTATCTGAA 238 consensus_6673#1 GATGC-------CAAAGTTTTCATTGCTTATTCTGTGCACCTCGTACTCGTGCTTCTGGT 223 ** *** * *** ** * * * * ** ** **** consensus_6673#0 GCTGGAGCTGGTTCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCT 293 consensus_6673#3 GCTGGAGCTGGTTCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCT 122 consensus_6673#2 GCTGGAGCTGGTGCCCGCCAAGGACTTCCCGAGCGCGGTGTGCGAGATGTGTATCGCGCT 298 consensus_6673#1 ACTGGAGCTTCGTGCGGT--AGGACATGTCGCACAGGTTGCACTGAAACCGC-TGGCCCT 280 ******** * * ***** * ** * * ** * * * * ** ** consensus_6673#0 GCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCAGTACGCGCTG-CGGT 352 consensus_6673#3 GCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCGGTACGCGCTG-CGGT 181 consensus_6673#2 GCTGCACGATTTCGACACGCTGTACCAGAACGTGCACGACCACCGGTACGCGCTG-CGGT 357 consensus_6673#1 CGCTCGTGATGGTGACG-GCCGAGCCC---CCCGTCCGG--GCCGGTTGGCTTTGGTTGT 334 * *** *** ** * ** * * ** ** ** ** ** ** consensus_6673#0 TGCTTCTGGAGACGCAGAAAAGCGAGGACGTATTGTCGTCGATTCCGGTGAGCACGATCG 412 consensus_6673#3 TGCTTCTGGAGACGCAGAAAAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCG 241 consensus_6673#2 TGCTTCTGGAGACGCAGAAAAGCGAGGACGTAGAGTCGTCGATTCCGGTGAGCACGATCG 417 consensus_6673#1 TGCTGCTGGCAACG--GCGACACCATCCTGCGCGGGTGCC--TTCGTGCAGCTGTGGTTG 390 **** **** *** * * * * * * * * *** * * * * consensus_6673#0 AACCGAACCTGGT---GGAGGTGTACGAACCGCCGCCGG-TGGTGCTGATCGACACCGGG 468 consensus_6673#3 AACCGAACCTGGT---GGAGGTGTACGAACCGCCGCCGG-TGGTGCTGATCGACACCGGG 297 consensus_6673#2 AACCGAACCTGGCT-GNGAGGTGTACGAACCGCCGCCGGCTGGTGCTGATCGACACCGGG 476 consensus_6673#1 TA--AAAGTTGGTTAGCTCGACAAACAGATTGCCGCAGG--GGGACCAA-CGGTACAGAT 445 * ** *** * ** * ***** ** ** * * ** ** * consensus_6673#0 AACAACGTGGTGG-AGGTGAACACGGACGATCAGATCGTGCTGGAGGATGGCAGTGTGGA 527 consensus_6673#3 AACAACGTGGTGG-AGGTGAACACGGACGATCAGATCGTGCTGGAGGATGGCAGTGTGGA 356 consensus_6673#2 AACAACGTGGTGGCAGGTGAACCACGGGACGCACTCAGACTTGCTGCCTGGNNNCGCACT 536 consensus_6673#1 GATGGTTCGTCGGAGCAGCGGCCGTGTCGAGCTGCTGCACTTTCGG--TCGTTGCATCTG 503 * * ** * * * * * * * consensus_6673#0 GGGCGAAA-TCTAAACGAACAGGAGGAGGCAACAGATCGATGTGTACCATGTCGATGGTC 586 consensus_6673#3 GGGCGAA--TCTAA-CGAACAGGAGGAGG------------------------------- 382 consensus_6673#2 GGCTCAC--GCTGCTGCGACGGGCGAAN-------------------------------- 562 consensus_6673#1 GGACGACGATGGGCGCTGGCTGGCCGGTTCTCCGT----------------TCAGCATCC 547 ** * * ** consensus_6673#0 AGCTGCAGCACATCGTCATGGAGGGTGGCACGTACATCGATTTACAGCCTTACCGGCCAC 646 consensus_6673#3 ------------------------GTGGCACGTACATCGATTTACAGCCTTACCGGCCAC 418 consensus_6673#2 -------------------------TCTAACGAACAGCG---CACGGC------ANGCAC 588 consensus_6673#1 GGGTTGGCGTGCCCGTCGGAACCAGTTGATAGGAGACTGTCGTGGATTTTTTAGAATAAT 607 * * * * * * consensus_6673#0 CGAAACCAGCACCTGTACCAATCGTAACACCAGTACCACGATCACTACGTACTAATAATG 706 consensus_6673#3 CGAAACCAGCACCTGTACCAATCGTAACACCAGTACCACGATCACTACGTACTAATAATG 478 consensus_6673#2 --AGATCGACTGCTGTACCAATGNTCCNACTCGCNTCCACGCTGCCACGCC--------- 637 consensus_6673#1 GAGCCGCCCCAGCAGTTGCATTCGCTGCGTTGGTTCGCTTTCTACTCTGCATCTGCGAAC 667 * * * ** ** * * * * consensus_6673#0 TACTGAACACTTCCATCCCGAACCACGGTTCGC------------- 739 consensus_6673#3 TACTGAACACTTCCATCCCGAACCACGGTTCGCAGATGCAGAGTAG 524 consensus_6673#2 ---------------------------------------------- consensus_6673#1 CGTGGTTCGGGATGGAA----------------------------- 684 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||