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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1119 fasta sequence
[ACCATTACGAAGTGATTGACTATGGGCGCAAGCACGAGCAGTACATCCCCTCGACCCACGGCACTATCGTGAAGAGCAAGAACTCGTTCGAAAACTCGGGATTTGTCGATTACGATTATGAAGATCCGACACCGCTGATGGAATCGTACGCACACTTTGACGACATGGACTCGGGATATCAGGAACCGCAGGAGGTGCTGGGTTCGCTGAACCGCGCAGGTAGTGCTGCCAACCGTACCGCCACGCTGGTCTCATCGCCGACGCGCATCGAAAATCCCAACATGGCCCCGCTGAACCTGTACCCAACCATGCTCAGCTCCACGATGGGCAGGAAGGCACACGGCACAGGCACTGGTGCTGGATCACTGTCCCGGCGGATCAGTGACATCAAGAACTGAAGTGGTGGAGGAGGAGTGTGAGAATAGAGGCGAGAGAGGGCGAAGCGAAGGCGATTGAGTGAGAATGGAACACTTACATTCCTAATAGACGCGACACGTCCTCCTGCCAGGGGAGGAAGTGTTGGTTGAAAAGAACTACTTAGTACTTGCGTTGGACGTGCCGGGGTGGCTGGCAAAAGCAGTCTCAAAGCCACGGTACGATGGTGGTGGCACGCCGGATCGAATTGATACTGAATTGAGAAGAATGTTCCTCTAAGATGGTAGAACAGTGAAATGATTTATAACTTACTACTAAAGCAGAAGATACCAAACCAAACCCAACTAGACACACACACAGATATCTTCACCATTCACAGGCCCTTTTCCACGCGCGTAAACAAACCCTCCCGACTGCTTAACCTGCTACTGTATTACCACGCATCTTAACTATAACAATAATAACTACCACGCATAATGCAATGCCCCTACGTGCAGGTGCACAACAACAACTCTCATCTCCATTCAATGCAATGCAAACACTGAATGCGACATTTCATATTCTTAGTGGCTCAATTGCTGGCTATTGCTTTCATACAACAAGGCAGAGAGAATCGAATAGGAGGGTAGATCAGAGCAATGTTCATACTCCAGTCCAGGGCGAAGGCGATGAACATTTTGTGGGAATTTTAAAAGCAACAAAACATGGAAACAGCAAGCAACAAACAATAAACATAATACTCTA]
[+] EMBL BX627521 [ACCATTACGAAGTGATTGACTATGGGCGCAAGCACGAGCAGTACATCCCCTCGACCCACGGCACTATCGTGAAGAGCAAGAACTCGTTCGAAAACTCGGGATTTGTCGATTACGATTATGAAGATCCGACACCGCTGATGGAATCGTACGCACACTTTGACGACATGGACTCGGGATATCAGGAACCGCAGGAGGTGCTGGGTTCGCTGAACCGCGCAGGTAGTGCTGCCAACCGTACCGCCACGCTGGTCTCATCGCCGACGCGCATCGAAAATCCCAACATGGCCCCGCTGAACCTGTACCCAACCATGCTCAGCTCCACGATGGGCAGGAAGGCACACGGCACAGGCACTGGTGCTGGATCACTGTCCCGGCGGATCAGTGACATCAAGAACTGAAGTGGTGGAGGAGGAGTGTGAGAATAGAGGCGAGAGAGGGCGAAGCGAAGGCGATTGAGTGAGAATGGAACACTTACATTCCTAATAGACGCGACACGTCCTCCTGCCAGGGGAGGAAGTGTTGGTTGAAAAGAACTACTTAGTACTTGCGTTGGACGTGCCGGGGTGGCTGGCAAAAGCAGTCTCAAAGCCACGGTACGATGGTGGTGGCACGCCGGATCGAATTGATACTGAATTGAGAAGAATGTTCCTCTAAGATGGTAGAACAGTGAAATGATTTATAACTTACTACTAAAGCAGAAGATACCAAACCAAACCCAACTAGACACACACACAGATATCTTCACCATTCACAGGGCCTTTTCCACGCGCGTAAACAAACCCTCCCGACTGCTTAACCTGCTACTGTATT ]
[+] EMBL BX624971 [ TCGATTACGATTATGAAGATCCGACACCGCTGATGGAATCGTACGCACACTTTGACGACATGGACTCGGGATATCAGGAACCGCAGGAGGTGCTGGGTTCGCTGAACCGCGCAGGTAGTGCTGCCAACCGTACCGCCACGCTGGTCTCATCGCCGACGCGCATCGAAAATCCCAACATGGCCCCGCTGAACCTGTACCCAACCATGCTCAGCTCCACGATGGGCAGGAAGGCACACGGCACAGGCACTGGTGCTGGATCACTGTCCCGGCGGATCAGTGACATCAAGAACTGAAGTGGTGGAGGAGGAGTGTGAGAATAGAGGCGAGAGAGGGCGAAGCGAAGGCGATTGAGTGAGAATGGAACACTTACATTCCTAATAGACGCGACACGTCCTCCTGCCAGGGGAGGAAGTGTTGGTTGAAAAGAACTACTTAGTACTTGCGTTGGACGTGCCGGGGTGGCTGGCAAAAGCAGTCTCAAAGCCACGGTACGATGGTGGTGGCACGCCGGATCGAATTGATACTGAATTGAGAAGAATGTTCCTCTAAGATGGTAGAACAGTGAAATGATTTATAACTTACTACTAAAGCAGAAGATACCAAACCAAACCCAACTAGACACACACACAGATATCTTCACCATTCACAGGCCCTTTTCCACGCGCGTAAACAAACCCTCCCGACTGCTTAACCTGCTACTGTATTACCACGCATCTTAACTATAACAATAATAACTACCACGCATAATGCAAT ]
[+] EMBL BX623884 [ GGAGGTGCTGGGTTCGCTGAACCGCGCAGGTAGTGCTGCCAACCGTACCGCCACGCTGGTCTCATCGCCGACGCGCATCGAAAATCCCAACATGGCCCCGCTGAACCTGTACCCAACCATGCTCAGCTCCACGATGGGCAGGAAGGCACACGGCACAGGCACTGGTGCTGGATCACTGTCCCGGCGGATCAGTGACATCAAGAACTGAAGTGGTGGAGGAGGAGTGTGAGAATAGAGGCGAGAGAGGGCGAAGCGAAGGCGATTGAGTGAGAATGGAACACTTACATTCCTAATAGACGCGACACGTCCTCCTGCCAGGGGAGGAAGTGTTGGTTGAAAAGAACTACTTAGTACTTGCGTTGGACGTGCCGGGGTGGCT ]
[+] EMBL BX617503 [ ATGATTTATAACTTACTACTAAAGCAGAAGATACCAAACCAAACCCAACTAGACACACACACAGATATCTTCACCATTCACAGGCCCTTTTCCACGCGCGTAAACAAACCCTCCCGACTGCTTAACCTGCTACTGTATTACCACGCATCTTAACTATAACAATAATAACTACCACGCATAATGCAATGCCCCTACGTGCAGGTGCACAACAACAACTCTCATCTCCATTCAATGCAATGCAAACACTGAATGCGACATTTCATATTCTTAGTGGCTCAATTGCTGGCTATTGCTTTCATACAACAAGGCAGAGAGAATCGAATAGGAGGGTAGATCAGAGCAATGTTCATACTCCAGTCCAGGGCGAAGGCGATGAACATTTTGTGGGAATTTTAAAAGCAACAAAACATGGAAACAGCAAGCAACAAACAATAAACATAATACTCTA]
consensusID : consensus_6676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence
[CCCGAGGTAGCGCCAGCCATCCGGACATCGTACCTTTGGGCGGCCTTACACGCACGGCACGCAACACTTTATCACGGAATCGTACGGCGGCAATCCGGAGGACCATTACGAAGTGATTGACTATGGGCGCAAGCACGAGCAGTACATCCCCTCGACCCACGGCACTATCGTGAAGAGCAAGAACTCGTTCGAAAACTCGGGATTTGTCGATTACGATTATGAAGATCCGACACCGCTGATGGAATCGTACGCACACTTTGACGACATGGGACCTCGGGGAATAATTCCAAGGGAAAAC]
[+] EMBL AL930423 [CCCGAGGTAGCGCCAGCCATCCGGACATCGTACCTTTGGGCGGCCTTACACGCACGGCACGCAACACTTTATCACGGAATCGTACGGCGGCAATCCGGAGGACCATTACGAAGTGATTGACTATGGGCGCAAGCACGAGCAGTACATCCCCTCGACCCACGGCACTATCGTGAAGAGCAAGAACTCGTTCGAAAACTCGGGATTTGTCGATTACGATTATGAAGATCCGACACCGCTGATGGAATCGTACGCACACTTTGACGACATGGGACCTCGGGGAATAATTCCAAGGGAAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6676#0 ------------------------------------------------------------
consensus_6676#1 CCCGAGGTAGCGCCAGCCATCCGGACATCGTACCTTTGGGCGGCCTTACACGCACGGCAC 60
consensus_6676#0 -----------------------------------------ACCATTACGAAGTGATTGA 19
consensus_6676#1 GCAACACTTTATCACGGAATCGTACGGCGGCAATCCGGAGGACCATTACGAAGTGATTGA 120
*******************
consensus_6676#0 CTATGGGCGCAAGCACGAGCAGTACATCCCCTCGACCCACGGCACTATCGTGAAGAGCAA 79
consensus_6676#1 CTATGGGCGCAAGCACGAGCAGTACATCCCCTCGACCCACGGCACTATCGTGAAGAGCAA 180
************************************************************
consensus_6676#0 GAACTCGTTCGAAAACTCGGGATTTGTCGATTACGATTATGAAGATCCGACACCGCTGAT 139
consensus_6676#1 GAACTCGTTCGAAAACTCGGGATTTGTCGATTACGATTATGAAGATCCGACACCGCTGAT 240
************************************************************
consensus_6676#0 GGAATCGTACGCACACTTTGACGACATGGA--CTCGGGATATCAGGAACCGCAGGAGGTG 197
consensus_6676#1 GGAATCGTACGCACACTTTGACGACATGGGACCTCGGGGAAT----AATTCCAAGGGAAA 296
***************************** ****** ** ** ** * *
consensus_6676#0 CTGGGTTCGCTGAACCGCGCAGGTAGTGCTGCCAACCGTACCGCCACGCTGGTCTCATCG 257
consensus_6676#1 AC---------------------------------------------------------- 298
consensus_6676#0 CCGACGCGCATCGAAAATCCCAACATGGCCCCGCTGAACCTGTACCCAACCATGCTCAGC 317
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 TCCACGATGGGCAGGAAGGCACACGGCACAGGCACTGGTGCTGGATCACTGTCCCGGCGG 377
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 ATCAGTGACATCAAGAACTGAAGTGGTGGAGGAGGAGTGTGAGAATAGAGGCGAGAGAGG 437
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 GCGAAGCGAAGGCGATTGAGTGAGAATGGAACACTTACATTCCTAATAGACGCGACACGT 497
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 CCTCCTGCCAGGGGAGGAAGTGTTGGTTGAAAAGAACTACTTAGTACTTGCGTTGGACGT 557
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 GCCGGGGTGGCTGGCAAAAGCAGTCTCAAAGCCACGGTACGATGGTGGTGGCACGCCGGA 617
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 TCGAATTGATACTGAATTGAGAAGAATGTTCCTCTAAGATGGTAGAACAGTGAAATGATT 677
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 TATAACTTACTACTAAAGCAGAAGATACCAAACCAAACCCAACTAGACACACACACAGAT 737
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 ATCTTCACCATTCACAGGCCCTTTTCCACGCGCGTAAACAAACCCTCCCGACTGCTTAAC 797
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 CTGCTACTGTATTACCACGCATCTTAACTATAACAATAATAACTACCACGCATAATGCAA 857
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 TGCCCCTACGTGCAGGTGCACAACAACAACTCTCATCTCCATTCAATGCAATGCAAACAC 917
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 TGAATGCGACATTTCATATTCTTAGTGGCTCAATTGCTGGCTATTGCTTTCATACAACAA 977
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 GGCAGAGAGAATCGAATAGGAGGGTAGATCAGAGCAATGTTCATACTCCAGTCCAGGGCG 1037
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 AAGGCGATGAACATTTTGTGGGAATTTTAAAAGCAACAAAACATGGAAACAGCAAGCAAC 1097
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 AAACAATAAACATAATACTCTA 1119
consensus_6676#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||