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Anopheles gambiae
cluster # 6678 cluster # 6678       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6678#0 length = 772 sequences # 1  
consensus_6678#1 length = 769 sequences # 4  

consensusID : consensus_6678#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 772
fasta sequence
                              [GCCAAGAATTCGGCACGAGGGTGTGCGGAACATGAATGTTCGAGTATTACGGCAAAGTGTGTGCGAGTTTTTGAGTGGCGGTGGTGGGTATGGAGGGTTGGGAAATCGCTCATGCAACAATGAAAAACTGGAAACATTTATACACAACAATGCATACCGTCTAGTGTGTTAATGTATGTGAGCGTGTGTATGTATGTATGAAATTGTTGTTTTGAGGCTCACATTAAAACGTCGAATAAAAACCGCACACAATCAAAACAGGCCAAGTTACGAAACCAAAACAAAGTACCCCCCCCCCCCCCTGAAATCAGCTGTCAAACGCCTGGTGCTGTCAAAGCAGATCTGCTTTGGATATTTCAAAATCGAGAACAGGNACCCGGGAAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATTGTGGCCACCGGCACCGGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATTAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGGCAACTTCTTGAAGGCAAAAACGAATTTATCGGTCTCAAGGGTTGGTGTACGACAGAAGGGGATGCAACGGATTGTCCTACACGGCTGGATTACGCTGTCAAACGAANGGATCANACACTGGACCGAGGAAAGTACGTNGCAAGGACCGGTGTGAAAAGTACTGATCCAAAAAAGGGACAATGTCCCTTTAGGCACGGAAATGATACTTAAGTCNCTTTNATTTGTAATCNAATCAGGCATTGTTG]

[+] EMBL BX467592             [GCCAAGAATTCGGCACGAGGGTGTGCGGAACATGAATGTTCGAGTATTACGGCAAAGTGTGTGCGAGTTTTTGAGTGGCGGTGGTGGGTATGGAGGGTTGGGAAATCGCTCATGCAACAATGAAAAACTGGAAACATTTATACACAACAATGCATACCGTCTAGTGTGTTAATGTATGTGAGCGTGTGTATGTATGTATGAAATTGTTGTTTTGAGGCTCACATTAAAACGTCGAATAAAAACCGCACACAATCAAAACAGGCCAAGTTACGAAACCAAAACAAAGTACCCCCCCCCCCCCCTGAAATCAGCTGTCAAACGCCTGGTGCTGTCAAAGCAGATCTGCTTTGGATATTTCAAAATCGAGAACAGGNACCCGGGAAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATTGTGGCCACCGGCACCGGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATTAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGGCAACTTCTTGAAGGCAAAAACGAATTTATCGGTCTCAAGGGTTGGTGTACGACAGAAGGGGATGCAACGGATTGTCCTACACGGCTGGATTACGCTGTCAAACGAANGGATCANACACTGGACCGAGGAAAGTACGTNGCAAGGACCGGTGTGAAAAGTACTGATCCAAAAAAGGGACAATGTCCCTTTAGGCACGGAAATGATACTTAAGTCNCTTTNATTTGTAATCNAATCAGGCATTGTTG]


>consensus_6678#0 GCCAAGAATTCGGCACGAGGGTGTGCGGAACATGAATGTTCGAGTATTACGGCAAAGTGT GTGCGAGTTTTTGAGTGGCGGTGGTGGGTATGGAGGGTTGGGAAATCGCTCATGCAACAA TGAAAAACTGGAAACATTTATACACAACAATGCATACCGTCTAGTGTGTTAATGTATGTG AGCGTGTGTATGTATGTATGAAATTGTTGTTTTGAGGCTCACATTAAAACGTCGAATAAA AACCGCACACAATCAAAACAGGCCAAGTTACGAAACCAAAACAAAGTACCCCCCCCCCCC CCTGAAATCAGCTGTCAAACGCCTGGTGCTGTCAAAGCAGATCTGCTTTGGATATTTCAA AATCGAGAACAGGNACCCGGGAAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCC TCCAAGATTGTGGCCACCGGCACCGGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGAT TAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGGCAACTTCTTGAAG GCAAAAACGAATTTATCGGTCTCAAGGGTTGGTGTACGACAGAAGGGGATGCAACGGATT GTCCTACACGGCTGGATTACGCTGTCAAACGAANGGATCANACACTGGACCGAGGAAAGT ACGTNGCAAGGACCGGTGTGAAAAGTACTGATCCAAAAAAGGGACAATGTCCCTTTAGGC ACGGAAATGATACTTAAGTCNCTTTNATTTGTAATCNAATCAGGCATTGTTG



consensusID : consensus_6678#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 769
fasta sequence
                              [CCGGTGCGGCCGAAGGAAAACAATTGTTGTGAAATAGTGATCGAAAACGTAAATAAAATAGTCATCTCCACGCATCGCTCGCTACAGAACAGCACCCGGG-AAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAGAGGATGCAACGGATTGTCCTACACGCTGGATTACGCCGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGCAAATACGAAAAACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGGACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAACAAAGAGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTTGTTAGTAGCGTTATTTTGAGTGTAATAAATTAGCCGNGGTTGAGTACCT]

[+] EMBL BM612488             [CCGGTGCGGCCGAAGGAAAACAATTGTTGTGAAATAGTGATCGAAAACGTAAATAAAATAGTCATCTCCACGCATCGCTCGCTACAGAACAGCACCCGGG AAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAGAGGATGCAACGGATTGTCCTACACGCTGGATTACGCCGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGCAAATACGAAAAACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGGACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAAC                                                                                            ]
[+] EMBL BX615910             [                         GTTGTGAAATAGTGATCGAAAACGTAAATAAAATAGTCATCTCCACGCATCTCTCGCTACAGAACAGCACCCGGG AAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATTGTGGCCACCGCCACCGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGCAACTTCTTGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAGGGGATGCAACGGATTGTCCTACACGCTGGATTACGCTGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAAAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTCTTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGGCAGAGCAGCAAACACGAAACACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGTACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAACAAAGA                                                                                       ]
[+] EMBL BX623214             [                                                             TCATCTCCACGCATCGCTCGCTACAGAACAGCACCCGGGNAAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAGAGGATGCAACGGATTGTCCTACACGCTGGATTACGCCGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGCAAATACGAAAAACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGGACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAACAAAGAGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTTGTTAGTAGCGTTATTTTGAGTGTAATAAATTAGCCGNGGTTGA      ]
[+] EMBL BM630070             [                                                                                                                                                                                                                                                                                                               ccgGCAACGGATTGTCCTACACGCTGGATTACGCTGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGCAAAAACGAAACACTTTTAGACGTACCGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGGACGACGGTCCCGCAACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAACAAAGAGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTTGTTAGTAGCGTTATTTTGAGTGTAATAAATTAGCCG TGTTGAGTACCT]


>consensus_6678#1 CCGGTGCGGCCGAAGGAAAACAATTGTTGTGAAATAGTGATCGAAAACGTAAATAAAATA GTCATCTCCACGCATCGCTCGCTACAGAACAGCACCCGGGAAAGGGCGAGGGCAGTAAAT TTCCAGTGAAACAATGGCCTCCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAGCA TCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGAT AAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAG AGGATGCAACGGATTGTCCTACACGCTGGATTACGCCGCAACGAAAGATAAAATGGACGA GGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTT AGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCC CAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGC AAATACGAAAAACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCT CCCTTCCTTCTCGGGACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGT AAAATCTAGCGTTGAACAAAGAGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTT GTTAGTAGCGTTATTTTGAGTGTAATAAATTAGCCGNGGTTGAGTACCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6678#0      --------------GCCAAGAATTCGGCACGAGGGTGTG-CGGAACATGAATGTTCGAGT 45
consensus_6678#1      CCGGTGCGGCCGAAGGAAAACAATTGTTGTGAAATAGTGATCGAAAACGTAAATAAAATA 60
                                    *  **  * * *    **    ***   *** * * *  *   *  

consensus_6678#0      ATTACGGCAAAGTGTGTGCGAGTTTTTGAGTGGCGGTGGTGGGTATGGAGGGTTGGGAAA 105
consensus_6678#1      GTCATCTCCACGCAT-CGCTCGCTACAGAACAGCACCCGGGAAAGGGCGAGGGCAGTAAA 119
                       * *   * * *  *  **  * *   **   **    * *     *   **   * ***

consensus_6678#0      TCGCTCATGCAACAATGAAAAACTGGAAACATTTATAC-ACAACAATGCATACCGTCTAG 164
consensus_6678#1      TTTCCAGTGAAACAATGGCCT-CCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAG 178
                      *  *   ** *******     *    * * *    **  * **  *** * ****  **

consensus_6678#0      TGTGTTAATGTA-TGTGAGCGTGTGTATGTATGTATGAAATTGTTGTTTTGAGGCTCACA 223
consensus_6678#1      CATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGG 238
                        *   **  *  **     * * * *    ***     *     *          **  

consensus_6678#0      TTAAAACGTCGAATAAAAACCGCACACAATCAAAACAGGC-CAAGTTACGAAACCAAAAC 282
consensus_6678#1      ATAAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAG 298
                       **** *  *   *  **  *  * ** *    * * * * **** *  *    * * * 

consensus_6678#0      AAAGTACCCCCCCCCCCCCCTGAAATCAGCTGTCAAACGCCTGGTGCTGTCAAAGCAGAT 342
consensus_6678#1      AGAGGATGCAACGGATTGTCCTACAC--GCTGGATTACGCC--GCAACGAAAGATAAAAT 354
                      * ** *  *  *       *  * *   ****    *****  *    *  * *  * **

consensus_6678#0      CTGCTTTGGA-TATTTCAAAATCGAGAACAGGNACC---CGGGAAAGGGCGAGGGCAGTA 398
consensus_6678#1      GGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTC 414
                         *   * * ** * **  *  * *   * * **    **  **   *  *   * ** 

consensus_6678#0      AATTTCCAGTGAAACAATGGCCTCCAAGATTGTGGCCACCGGCACCGGTGCGTGCCGTGA 458
consensus_6678#1      CCTTTTAGGCACGGAAATGGATTACGTTGAAACGGAC-CTGTCGGCGGAATTTGTATTCA 473
                        ***   *      *****  * *        ** * * * *  ***    **   * *

consensus_6678#0      AGCATCGGAAGCTGCTGCCGATTAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACA 518
consensus_6678#1      ACAATCCCAA--CATCAAGGGCACGTGCGGC--TGTGGC-GAATCGTTCAGCATCTAAC- 527
                      *  ***  **         *    * ** **  *** ** **  *   *****   *** 

consensus_6678#0      GGATAAAGGCAACTTCTTGAAGGCAAAAACGAATTTATCGGTCTCAAGGGTTGGTGTACG 578
consensus_6678#1      GAGTCAGAGCAGC-----AAATACGAAAA-ACTTTTAGACGTACTGTAAGTTGCTTCGCG 581
                      *  * *  *** *      **  * ****    ****   **       **** *   **

consensus_6678#0      ACAGAAGGGGATGCAACGGATTGTCCTACACGGCTGGATTACGCTGTCAAACGAANGGAT 638
consensus_6678#1      ATAGAAAA--ATG----GGATCGCTCC-----------CTTCCTTCTCGGGACGACGGTC 624
                      * ****    ***    **** *  *             * *  * **      * **  

consensus_6678#0      CANACACTGGACCGAGGAAAGTACGTNGCAAGGACCGGTGTGAAA-AGTACTGATCCAAA 697
consensus_6678#1      CCGCTACTTTCTCGTGGCTTGT-TGTTTTA--GATTTGTAAAATCTAGCGTTGAACAAAG 681
                      *    ***    ** **   **  **   *  **   **   *   **   *** * ** 

consensus_6678#0      AAAGGGACAATGT-CCCTTTAGGCACGGAAATGATACTTA--AGTCNCTTTNATTTGTA- 753
consensus_6678#1      AGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTTGTTAGTAGCGTTATTTTGAGT 741
                      * **   **   *  *** **   *    ***    ***   ***  * **  ****   

consensus_6678#0      --ATCNAATCAGGCATTGTTG------- 772
consensus_6678#1      GTAATAAATTAGCCGNGGTTGAGTACCT 769
                        *   *** ** *   ****       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)