These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [GCCAAGAATTCGGCACGAGGGTGTGCGGAACATGAATGTTCGAGTATTACGGCAAAGTGTGTGCGAGTTTTTGAGTGGCGGTGGTGGGTATGGAGGGTTGGGAAATCGCTCATGCAACAATGAAAAACTGGAAACATTTATACACAACAATGCATACCGTCTAGTGTGTTAATGTATGTGAGCGTGTGTATGTATGTATGAAATTGTTGTTTTGAGGCTCACATTAAAACGTCGAATAAAAACCGCACACAATCAAAACAGGCCAAGTTACGAAACCAAAACAAAGTACCCCCCCCCCCCCCTGAAATCAGCTGTCAAACGCCTGGTGCTGTCAAAGCAGATCTGCTTTGGATATTTCAAAATCGAGAACAGGNACCCGGGAAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATTGTGGCCACCGGCACCGGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATTAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGGCAACTTCTTGAAGGCAAAAACGAATTTATCGGTCTCAAGGGTTGGTGTACGACAGAAGGGGATGCAACGGATTGTCCTACACGGCTGGATTACGCTGTCAAACGAANGGATCANACACTGGACCGAGGAAAGTACGTNGCAAGGACCGGTGTGAAAAGTACTGATCCAAAAAAGGGACAATGTCCCTTTAGGCACGGAAATGATACTTAAGTCNCTTTNATTTGTAATCNAATCAGGCATTGTTG] [+] EMBL BX467592 [GCCAAGAATTCGGCACGAGGGTGTGCGGAACATGAATGTTCGAGTATTACGGCAAAGTGTGTGCGAGTTTTTGAGTGGCGGTGGTGGGTATGGAGGGTTGGGAAATCGCTCATGCAACAATGAAAAACTGGAAACATTTATACACAACAATGCATACCGTCTAGTGTGTTAATGTATGTGAGCGTGTGTATGTATGTATGAAATTGTTGTTTTGAGGCTCACATTAAAACGTCGAATAAAAACCGCACACAATCAAAACAGGCCAAGTTACGAAACCAAAACAAAGTACCCCCCCCCCCCCCTGAAATCAGCTGTCAAACGCCTGGTGCTGTCAAAGCAGATCTGCTTTGGATATTTCAAAATCGAGAACAGGNACCCGGGAAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATTGTGGCCACCGGCACCGGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATTAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGGCAACTTCTTGAAGGCAAAAACGAATTTATCGGTCTCAAGGGTTGGTGTACGACAGAAGGGGATGCAACGGATTGTCCTACACGGCTGGATTACGCTGTCAAACGAANGGATCANACACTGGACCGAGGAAAGTACGTNGCAAGGACCGGTGTGAAAAGTACTGATCCAAAAAAGGGACAATGTCCCTTTAGGCACGGAAATGATACTTAAGTCNCTTTNATTTGTAATCNAATCAGGCATTGTTG] consensusID : consensus_6678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 769 fasta sequence [CCGGTGCGGCCGAAGGAAAACAATTGTTGTGAAATAGTGATCGAAAACGTAAATAAAATAGTCATCTCCACGCATCGCTCGCTACAGAACAGCACCCGGG-AAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAGAGGATGCAACGGATTGTCCTACACGCTGGATTACGCCGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGCAAATACGAAAAACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGGACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAACAAAGAGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTTGTTAGTAGCGTTATTTTGAGTGTAATAAATTAGCCGNGGTTGAGTACCT] [+] EMBL BM612488 [CCGGTGCGGCCGAAGGAAAACAATTGTTGTGAAATAGTGATCGAAAACGTAAATAAAATAGTCATCTCCACGCATCGCTCGCTACAGAACAGCACCCGGG AAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAGAGGATGCAACGGATTGTCCTACACGCTGGATTACGCCGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGCAAATACGAAAAACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGGACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAAC ] [+] EMBL BX615910 [ GTTGTGAAATAGTGATCGAAAACGTAAATAAAATAGTCATCTCCACGCATCTCTCGCTACAGAACAGCACCCGGG AAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATTGTGGCCACCGCCACCGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGCAACTTCTTGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAGGGGATGCAACGGATTGTCCTACACGCTGGATTACGCTGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAAAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTCTTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGGCAGAGCAGCAAACACGAAACACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGTACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAACAAAGA ] [+] EMBL BX623214 [ TCATCTCCACGCATCGCTCGCTACAGAACAGCACCCGGGNAAAGGGCGAGGGCAGTAAATTTCCAGTGAAACAATGGCCTCCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAGCATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGGATAAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAGAGAGGATGCAACGGATTGTCCTACACGCTGGATTACGCCGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGCAAATACGAAAAACTTTTAGACGTACTGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGGACGACGGTCCCGCTACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAACAAAGAGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTTGTTAGTAGCGTTATTTTGAGTGTAATAAATTAGCCGNGGTTGA ] [+] EMBL BM630070 [ ccgGCAACGGATTGTCCTACACGCTGGATTACGCTGCAACGAAAGATAAAATGGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTCCCTTTTAGGCACGGAAATGGATTACGTTGAAACGGACCTGTCGGCGGAATTTGTATTCAACAATCCCAACATCAAGGGCACGTGCGGCTGTGGCGAATCGTTCAGCATCTAACGAGTCAGAGCAGCAAAAACGAAACACTTTTAGACGTACCGTAAGTTGCTTCGCGATAGAAAAATGGGATCGCTCCCTTCCTTCTCGGGACGACGGTCCCGCAACTTTCTCGTGGCTTGTTGTTTTAGATTTGTAAAATCTAGCGTTGAACAAAGAGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTTGTTAGTAGCGTTATTTTGAGTGTAATAAATTAGCCG TGTTGAGTACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6678#0 --------------GCCAAGAATTCGGCACGAGGGTGTG-CGGAACATGAATGTTCGAGT 45 consensus_6678#1 CCGGTGCGGCCGAAGGAAAACAATTGTTGTGAAATAGTGATCGAAAACGTAAATAAAATA 60 * ** * * * ** *** *** * * * * * consensus_6678#0 ATTACGGCAAAGTGTGTGCGAGTTTTTGAGTGGCGGTGGTGGGTATGGAGGGTTGGGAAA 105 consensus_6678#1 GTCATCTCCACGCAT-CGCTCGCTACAGAACAGCACCCGGGAAAGGGCGAGGGCAGTAAA 119 * * * * * * ** * * ** ** * * * ** * *** consensus_6678#0 TCGCTCATGCAACAATGAAAAACTGGAAACATTTATAC-ACAACAATGCATACCGTCTAG 164 consensus_6678#1 TTTCCAGTGAAACAATGGCCT-CCAAGATCGTGGCCACCGCCACCGTGCGTGCCGTGAAG 178 * * ** ******* * * * * ** * ** *** * **** ** consensus_6678#0 TGTGTTAATGTA-TGTGAGCGTGTGTATGTATGTATGAAATTGTTGTTTTGAGGCTCACA 223 consensus_6678#1 CATCGGAAGCTGCTGCCGATGAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACAGG 238 * ** * ** * * * * *** * * ** consensus_6678#0 TTAAAACGTCGAATAAAAACCGCACACAATCAAAACAGGC-CAAGTTACGAAACCAAAAC 282 consensus_6678#1 ATAAAGCAACTTCTGGAAGGCAAAAACGAATTTATCGGTCTCAAGGTTGGTGTACGACAG 298 **** * * * ** * * ** * * * * * **** * * * * * consensus_6678#0 AAAGTACCCCCCCCCCCCCCTGAAATCAGCTGTCAAACGCCTGGTGCTGTCAAAGCAGAT 342 consensus_6678#1 AGAGGATGCAACGGATTGTCCTACAC--GCTGGATTACGCC--GCAACGAAAGATAAAAT 354 * ** * * * * * * **** ***** * * * * * ** consensus_6678#0 CTGCTTTGGA-TATTTCAAAATCGAGAACAGGNACC---CGGGAAAGGGCGAGGGCAGTA 398 consensus_6678#1 GGACGAGGAAGTAGTGCAGGACGGTGTGAAAGTACTGATCGACAAGAAGGCACAACTGTC 414 * * * ** * ** * * * * * ** ** ** * * * ** consensus_6678#0 AATTTCCAGTGAAACAATGGCCTCCAAGATTGTGGCCACCGGCACCGGTGCGTGCCGTGA 458 consensus_6678#1 CCTTTTAGGCACGGAAATGGATTACGTTGAAACGGAC-CTGTCGGCGGAATTTGTATTCA 473 *** * ***** * * ** * * * * *** ** * * consensus_6678#0 AGCATCGGAAGCTGCTGCCGATTAGAGCAGCACTGTCGCTGACACCGGCAGCAGTAAACA 518 consensus_6678#1 ACAATCCCAA--CATCAAGGGCACGTGCGGC--TGTGGC-GAATCGTTCAGCATCTAAC- 527 * *** ** * * ** ** *** ** ** * ***** *** consensus_6678#0 GGATAAAGGCAACTTCTTGAAGGCAAAAACGAATTTATCGGTCTCAAGGGTTGGTGTACG 578 consensus_6678#1 GAGTCAGAGCAGC-----AAATACGAAAA-ACTTTTAGACGTACTGTAAGTTGCTTCGCG 581 * * * *** * ** * **** **** ** **** * ** consensus_6678#0 ACAGAAGGGGATGCAACGGATTGTCCTACACGGCTGGATTACGCTGTCAAACGAANGGAT 638 consensus_6678#1 ATAGAAAA--ATG----GGATCGCTCC-----------CTTCCTTCTCGGGACGACGGTC 624 * **** *** **** * * * * * ** * ** consensus_6678#0 CANACACTGGACCGAGGAAAGTACGTNGCAAGGACCGGTGTGAAA-AGTACTGATCCAAA 697 consensus_6678#1 CCGCTACTTTCTCGTGGCTTGT-TGTTTTA--GATTTGTAAAATCTAGCGTTGAACAAAG 681 * *** ** ** ** ** * ** ** * ** *** * ** consensus_6678#0 AAAGGGACAATGT-CCCTTTAGGCACGGAAATGATACTTA--AGTCNCTTTNATTTGTA- 753 consensus_6678#1 AGAGAATCACCTTGTCCTGTACATAACATAATTTAGCTTGTTAGTAGCGTTATTTTGAGT 741 * ** ** * *** ** * *** *** *** * ** **** consensus_6678#0 --ATCNAATCAGGCATTGTTG------- 772 consensus_6678#1 GTAATAAATTAGCCGNGGTTGAGTACCT 769 * *** ** * **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||