These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 928 fasta sequence [GCCTAGGTTTTGTTCCCGTAGCAGCAGGGACGGTTCGTTTTATCGATTTTTGGTTTCCATATCTCTGGTGCGAGTTAGTACAAGGGAGGAGTGAAAAAAGCCCTTCCCGTTTCTTGGTGAAAACGTGGCCATGAGTGACGGAAGCGGTGGTGGCAGTGTGCGACAGCGCAAGAAAAGCTCCGGCGATGGCACCGGTACCAGGGCACGCAAATCAAAAGCAACGGGCAGCACCGCTTCCGGCAGCACGCCGAGTGCCGCCCAGCAGCACCAGATGTGGGCCCGGATCGTACTGATGGTGGGCATCGCGGCCATCGTGTACTTTACCACGTTCCGCACGCGGGAGAAAAAGTTTGCCACCCAGCGGGAGGTGCTCGAGCTGCACATCCCCCCGCTCGACTGCTCCCGCCCCTATCTGGAGGAAATATCCAAGTTTGCCGGCTGCATCCCGAAACGGTGCGGCCGGTTCGTGAGCGACAAGATCGTTTCGCCGGCCGAGGCCGGCATACTGCTCGATCTCGCCCGGGCCGGCTTCGCCCTCGGCCAGTCGGCGGGCGGCGCCTCCATACTGTACCTGCACTCGGGCGCCCTCTCCAAGGGGACGCAGTTCGTGAACGTGTACCGGTTGCCGGAAGCGAAGCAGCTCTTCACCAGCCAACATATCAACGTGTACCGGCACGTCAAGGCGAAGGTGCAGCAGGCGGTGGCGGAAAACTTCCGCCTTAGCGCGGACGCACTGCACCTCACCCATCCGACCTTCTTCTCCCGGCTGACGAACGCGACCGCCAAAACGATCCACGACGAGTACTGGCACGAGCACGTAGACAAGGAAACGTACAACTCGTTCCACTACACCACGCTGCTGTACCTGACAGACTATGGGAAGGATTTTACCGGAGGTCGGTTCGTGTTTATCGACAACGAGGGTAAG] [+] EMBL CNS09578 [GCCTAGGTTTTGTTCCCGTAGCAGCAGGGACGGTTCGTTTTATCGATTTTTGGTTTCCATATCTCTGGTGCGAGTTAGTACAAGGGAGGAGTGAAAAAAGCCCTTCCCGTTTCTTGGTGAAAACGTGGCCATGAGTGACGGAAGCGGTGGTGGCAGTGTGCGACAGCGCAAGAAAAGCTCCGGCGATGGCACCGGTACCAGGGCACGCAAATCAAAAGCAACGGGCAGCACCGCTTCCGGCAGCACGCCGAGTGCCGCCCAGCAGCACCAGATGTGGGCCCGGATCGTACTGATGGTGGGCATCGCGGCCATCGTGTACTTTACCACGTTCCGCACGCGGGAGAAAAAGTTTGCCACCCAGCGGGAGGTGCTCGAGCTGCACATCCCCCCGCTCGACTGCTCCCGCCCCTATCTGGAG ] [+] EMBL CNS09DER [ GAAAACGTGGCCATGAGTGACGGAAGCGGTGGTGGCAGTGTGCGACA CGCAAGAAAAGCTCCGGCGATGGCACCGGTACCAGGGCACGCAAATCAAAAGCAACGGGCAGCACCGCTTCCGGCAGCACGCCGAGTGCCGCCCAGCAGCACCAGATGTGGGCCCGGATCGTACTGATGGTGGGCATCGCGGCCATCGTGTACTTTACCACGTTCCGCACGCGGGAGAAAAAGTTTGCCACCCAGCGGGTGGTGCTCGAGCTG ] [+] EMBL BX611863 [ GGAAGCGGTGGTGGCAGTGTGCGACAGCGCAAGAAAAGCTCCGGCGATGGCACCGGTACCAGGGCACGCAAATCAAAAGCAACGGGCAGCACCGCTTCCGGCAGCACGCCGAGTGCCGCCCAGCAGCACCAGATGTGGGCCCGGATCGTACTGATGGTGGGCATCGCGGCCATCGTGTACTTTACCACGTTCCGCACGCGGGAGAAAAAGTTTGCCACCCAGCGGGAGGTGCTCGAGCTGCGCACCCAGCCGCTCGACTGCTCCCGCCCCTATCTGGAGGAAATATCCAAGTTTGCCGGCTGCATCCCGAAACGGTGCGGCCGGTTCGTGAGCGACAAGATCGTTTCGCCGGCCGAGGCCGGCATACTGCTCGATCTCGCCCGGGCCGGCTTCGCCCTCGGCCAGTCGGCGGGCGGCGCCTCCATACTGTACCTGCACTCGGGCGCCCTCTCCAAGGGGACGCAGTTCGTGAACGTGTACCGGTTGCCGGAAGCGAAGCAGCTCTTCACCAGCCAACATATCAACGTGTACCGGCACGTCAAGGC ] [+] EMBL BX609496 [ GCCCCTATCTGGAGGAAATATCCAAGTTTGCCGGCTGCATCCCGAAACGGTGCGGCCGGTTCGTGAGCGACAAGATCGTTTCGCCGGCCGAGGCCGGCATACTGCTCGATCTCGCCCGGGCCGGCTTCGCCCTCGGCCAGTCGGCGGGCGGCGCCTCCATACTGGACCTGCACTCGGGCGCCCTCTCCAAGGGGACGCAGTTCGTGAACGTGTACCGGTTGCCGGAAGCGAAGCAGCTCTTCACCAGCCAACATATCAACGTGTACCGGCACGTCAAGGCGAAGGTGCAGCAGGCGGTGGCGGAAAACTTCCGCCTTAGCGCGGACGCACTGCACCTCACCCATCCGACCTTCTTCTCCCGGCTGACGAACGCGACCGCCAAAACGATCCACGACGAGTACTGGCACGAGCACGTAGACAAGGAAACGTACAACTCGTTCCACTACACCACGCTGCTGTACCTGACAGACTATGGGAAGGATTTTACCGGAGGTCGGTTCGTGTTTATCGACAACGAGGGTAAG] consensusID : consensus_6680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [AATACTGTTTTTCTCGCAATACTTAAAATCATAGCAATACTATAATACAGCTTCCATTTTGGTTAAAACTAAAAAAAACAAAACAGCGTCTCTCTGTAACGTAGGAAGAAGGAACATAAGGAACACTGGAACGCAACATGGAATGTAAGCAGTCGTCTACGCACTAAACTCCTCCAGCGTACGGATCACTAGCACCGTGTCCGCCCTATCTCACGGTTCGGCCGATCTCTCCTCCGCGTTCTGATCGTCCTCATCGTCGTCCAGCGCAAACTTCGGATCGGCCATTGCGTACTCCCGGTCGCACGTGAACGAAATGGTGATCGCGTACCGCACCCCACCCGTCACCTGCTCCACGTGGTGCATATTTTCGGCGCCGGACGTGAACCCACTGACCCGGGCCCGCTTCGGCTCGATGTACACGTGCGTCCGGTTGTGCTTACCCTCGTTGTCGATAAACACGAACCGACCTCCGGT] [+] EMBL CNS09DES [AATACTGTTTTTCTCGCAATACTTAAAATCATAGCAATACTATAATACAGCTTCCATTTTGGTTAAAACTAAAAAAAACAAAACAGCGTCTCTCTGTAACGTAGGAAGAAGGAACATAAGGAACACTGGAACGCAACATGGAATGTAAGCAGTCGTCTACGCACTAAACTCCTCCAGCGTACGGATCACTAGCACCGTGTCCGCCCTATCTCACGGTTCGGCCGATCTCTCCTCCGCGTTCTGATCGTCCTCATCGTCGTCCAGCGCAAACTTCGGATCGGCCATTGCGTACTCCCGGTCGCACGTGAACGAAATGGTGATCGCGTACCGCACCCCACCCGTCACCTGCTCCACGTGGTGCATATTTTCGGCGCCGGACGTGAACCCACTGACCCGGGCCCGCTTCGGCTCGATGTACACGTGCGTCCGGTTGTGCTTACCCTCGTTGTCGATAAACACGAACCGACCTCCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6680#0 GCCTAGGTTTTGTTCCCGTAGCAGCAGGGACGGTTCGTTTTATCGATTTTTGGTTTCCAT 60 consensus_6680#1 ----------------------------------------------------AATACTGT 8 * * * consensus_6680#0 ATCTCTGGTGCGAGTTAGTACAAGGGAGGAGTGAAAAAAGCCCTTCCCGTTTCTTGGTGA 120 consensus_6680#1 TTTTCTCGCAATACTTAAAATCATAGCAATACTATAATACAGCTTCCA---TTTTGGTTA 65 * *** * * *** * * * * ** * ***** * ***** * consensus_6680#0 AAACGTGGCCATGAGTGACGGAAGCGGTGGTGGCAGTGTGCGACAGCGCAAGAAAAGCTC 180 consensus_6680#1 AAAC-----TAAAAAAAACAAAA----CAGCGTCTCTCTGTAACGTAGGAAGAAGGAACA 116 **** * * ** ** * * * * ** ** * ***** consensus_6680#0 CGGCGATGGCACCGGTACCAGGGCACGCAAATCAAAAGCAACGGGCAGCACCGCTTCCGG 240 consensus_6680#1 TAAGGA--ACACTGGAAC---GCAACATGGAATGTAAGCAGTCGTCTACGCA----CTAA 167 ** *** ** ** * ** * ***** * * * * * consensus_6680#0 CAGCACGCCGAGTGCCGCCCAGCAGCACCAGATGTGGGCCCGGATCGTACTGATGGTGGG 300 consensus_6680#1 ACTCCTCCAGCGTACGGATCACTAGCACCG--TGTCCGCCCT-ATCTCACGGTT------ 218 * * * ** * * ** ****** *** **** *** ** * * consensus_6680#0 CATCGCGGCCATCGTGTACTTTACCACGTTCCGCACGCGGGAGAAAAAGTTTGCCACCCA 360 consensus_6680#1 -----CGGCCGATCT---CTCCTCCGCGTTCTGATCGTCCTCA-------TCGTCGTCCA 263 ***** * ** ** ***** * ** * * * *** consensus_6680#0 GCGGGAGGTGCTCGAGCTGCACATCCCCCCGCTCGACTGCTCCCGCCCCTATCTGGAGGA 420 consensus_6680#1 GCG---------CAAACTTCGGATCGGCC--ATTGCGTACTCCCGGTCGCACGTGAACGA 312 *** * * ** * *** ** * * * ****** * * ** * ** consensus_6680#0 AATATCCAAGTTTGCCGGCTGCATCCCGAAACGGTGCGGCCGGTTCGTGAGCGACAAGAT 480 consensus_6680#1 AATG---GTGATCGCGTACCGCACCCC--ACCCGT-CACCTGCTCCACGTGGTGC---AT 363 *** * * ** * *** *** * * ** * * * * * * * * ** consensus_6680#0 CGTTTCGCCGGCCGAGGCCGGCATACTG-CTCGATCTCGCCCGGGCCGGCTTCGCCCTCG 539 consensus_6680#1 ATTTTCGGCGCCGGACGTGAACCCACTGACCCGGGCCCGCTTCGGCTCGATGTACACGTG 423 ***** ** * ** * * **** * ** * *** *** * * * * * consensus_6680#0 GCCAGTCGGCGGGCGGCGCCTCCATACTGTACCTGCACTCGGGCGCCCTCTCCAAGGGGA 599 consensus_6680#1 ------CGTCCGGTTGTGCTTACCCTCGTTGTCGATAAACACGAACCGACCTCCGGT--- 474 ** * ** * ** * * * * * * * * ** * * * consensus_6680#0 CGCAGTTCGTGAACGTGTACCGGTTGCCGGAAGCGAAGCAGCTCTTCACCAGCCAACATA 659 consensus_6680#1 ------------------------------------------------------------ consensus_6680#0 TCAACGTGTACCGGCACGTCAAGGCGAAGGTGCAGCAGGCGGTGGCGGAAAACTTCCGCC 719 consensus_6680#1 ------------------------------------------------------------ consensus_6680#0 TTAGCGCGGACGCACTGCACCTCACCCATCCGACCTTCTTCTCCCGGCTGACGAACGCGA 779 consensus_6680#1 ------------------------------------------------------------ consensus_6680#0 CCGCCAAAACGATCCACGACGAGTACTGGCACGAGCACGTAGACAAGGAAACGTACAACT 839 consensus_6680#1 ------------------------------------------------------------ consensus_6680#0 CGTTCCACTACACCACGCTGCTGTACCTGACAGACTATGGGAAGGATTTTACCGGAGGTC 899 consensus_6680#1 ------------------------------------------------------------ consensus_6680#0 GGTTCGTGTTTATCGACAACGAGGGTAAG 928 consensus_6680#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||