These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1339 fasta sequence [CCGGAAAAGTGTGTACACGGGGTGGTACGCTAGAGTGAGTGCGTATGCGTGGACAAAATCTCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAGATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGAGGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAGGTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGAATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAGCGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGTGCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTATGTGTTGACGTGTGTGTCATTTTTTCGGCCCTTTTGCGTGAAAAGCAAGAGCAGAGAAGAACAGTGTAGTGTGTAAGCGCAGTGCCTACTGTTCATTGCTGGTAGCACGAAAAAGGGGCAAAGAAACGGCTTCCAGCTTAGGGACGGTATTGGGAAACAAGGAATAGTAACCGGAATAAACCATTGGGCATTGGTGGACTGTTTGCT-GGACGGCGCTGTAGCAAGAGAATTAGAGCAAGTCAAGAACGGTGACGTCAGAAAGGATCTGAAAGGATAACGTGTAGCGAACATGGCTGGTCAAACGATCAATGACAGGTTGCTGGCTGCACGGCACAGCCTTGCTGGCCAAGGGCTGGCAAAATCCGTGTGCAAGGCTACGACGGAAGAAATGATTGGACCGAAGAAAAAACATCTTGATTATTTGGTACATTGCACCAACGAACCGAATGTGTCGATTCCTCATTTAGCAACATTGCTGATCGAGCGGTCTCAGAACGCCAATTTGGGTCGTGGTATACAAAGCATTGATTACCACCCATCACATGTTGGCCTATGGAAACGAGCGCTTTATTCAATATTTAGCTTCAAGCAATTCATCCTTCCAGTTGAACAACTTTCTCGATAAAGGTGGAGTGGCAAGGCGCTGTCGGTGCTCGTATGGGTTATGATATGTCTCCGTTTATACGGCGTTACGCAAAATATCTTAACGAGAAGGCGCTATCGTATCGTACAGTGGCGTTCGATTTTTGCAAAATGAAACGTGGAAAAAGAAGAAGGATCCTTGCGCGTGATGCACGCCGACAAGCTTCTGAAGACATTGCCCATTTTGCAAGCGCAGTTAGATTCGTTGCTGGGAGTTTGACTGTACAGCCAACGATCTCACAAA] [+] EMBL BM599785 [CCGGAAAAGTGTGTACACGGGGTGGTACGCTAGAGTGAGTGCGTATGCGTGGACAAAATCTCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAGATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGAGGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAGGTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGAATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAGCGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGTGCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTATGTGTTGACGTGTGTGTCATTTTTTCGGCCCTTTTGCGTGAAAAGCAAGAGCAGAGAAGAACAGTGTAGTGTGTAAGCGCAGTGCCTACTGTTCATTGCTGGTAGCACGAAAAAGGGGCAAAGAAACGGCTTCCAGCTTAGGGACGGTATTGGGAAACAAGGAATAGTAACCGGAATAAACCATTGGGCATTGGTGGACTGTTTGCTGGGACGGCGCTGTAGCAAGAGAATTAGAGCAAGT ] [+] EMBL BM584084 [ ccgGCGCAGTGCCTACTGTTCATTGCTGGTAGCACGAAAAAGGGGCAAAGAAACGGCTTCCAGCTTAGGGACGGTATTGGGAAACAAGGAATAGTAACCGGAATAAACCATTGGGCATTGGTGGACTGTTTGCT GGACGGCGCTGTAGCAAGAGAATTAGAGCAAGTCAAGAACGGTGACGTCAGAAAGGATCTGAAAGGATAACGTGTAGCGAACATGGCTGGTCAAACGATCAATGACAGGTTGCTGGCTGCACGGCACAGCCTTGCTGGCCAAGGGCTGGCAAAATCCGTGTGCAAGGCTACGACGGAAGAAATGATTGGACCGAAGAAAAAACATCTTGATTATTTGGTACATTGCACCAACGAACCGAATGTGTCGATTCCTCATTTAGCAACATTGCTGATCGAGCGGTCTCAGAACGCCAATTTGGGTCGTGGTATACAAAGCATTGATTACCACCCATCACATGTTGGCCTATGGAAACGAGCGCTTTATTCAATATTTAGCTTCAAGCAATTCATCCTTCCAGTTGAACAACTTTCTCGATAAAGGTGGAGTGGCAAGGCGCTGTCGGTGCTCGTATGGGTTATGATATGTCTCCGTTTATACGGCGTTACGCAAAATATCTTAACGAGAAGGCGCTATCGTATCGTACAGTGGCGTTCGATTTTTGCAAAATGAAACGTGGAAAAAGAAGAAGGATCCTTGCGC ] [+] EMBL BM624203 [ ccgGTTTGCT GGACGGCGCTGTAGCAAGAGAATTAGAGCAAGTCAAGAACGGTGACGTCAGAAAGGATCTGAAAGGATAACGTGTAGCGAACATGGCTGGTCAAACGATCAATGACAGGTTGCTGGCTGCACGGCACAGCCTTGCTGGCCAAGGGCTGGCAAAATCCGTGTGCAAGGCTACGACGGAAGAAATGATTGGACCGAAGAAAAAACATCTTGATTATTTGGTACATTGCACCAACGAACCGAATGTGTCGATTCCTCATTTAGCAACATTGCTGATCGAGCGGTCTCAGAACGCCAA TTGGGTCGTGGTATACAAAGCATTGATTACCACCCATCACATGTTGGCCTATGGAAACGAGCGCTTTATTCAATATTTAGCTTCAAGCAATTCATCCTTCCAGTTGAACAACTTTCTCGATAAAGGTGGAGT GCAAGGCGCTGTCGGTGCTCGTATGGGTTATGATATGTCTCCGTTTATACGGCGTTACGCAAAATATCTTAACGAGAAGGCGCTATCGTATCGTACAGTGGCGTTCGATTTTTGCAAAATGAAACGTGG AAAAGAAGAAGGATCCTTGCGCGTGATGCACGCCGACAAGCTTCTGAAGACATTGCCCATTTTGCAAGCGCAGTTAGATTCGTTGCTGGGAGTTTGACTGTACAGCCAACGATCTCACAAA] consensusID : consensus_6681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCGGCTAGAGTGAGTGCGTATGCGTGGACAAAATCTCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAGATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGAGGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAGGTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGAATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAGCGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGTGCGTGTGTTAGTGTGTGTGTGTATGTGTTGACGTGTGTGCAAGGTGGAATGTATAATGAGGTGTAGTTATAGCGCTTTTGGCGATCCCCCCCCCTGGGCTCCGATTTTGACAGATGGTTTTCCGCTTGTATATGTATTGATGGATTTTTTACGTATTGCATGGTCGATATTTGGTGGAGATCAATTTGGGTGAATATTTTAGTTTATTAGAACACAGCCCGTGATTTCAAATGGAAATTTTCCTTCGAGAACTTGAAGCGTTCGCCAAACTCGGAAAAACTAACTGT] [+] EMBL BM653849 [CCGGCTAGAGTGAGTGCGTATGCGTGGACAAAATCTCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAGATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGAGGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAGGTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGAATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAGCGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGTGCGTGTGTTAGTGTGTGTGTGTATGTGTTGACGTGTGTGCAAGGTGGAATGTATAATGAGGTGTAGTTATAGCGCTTTTGGCGATCCCCCCCCCTGGGCTCCGATTTTGACAGATGGTTTTCCGCTTGTATATGTATTGATGGATTTTTTACGTATTGCATGGTCGATATTTGGTGGAGATCAATTTGGGTGAATATTTTAGTTTATTAGAACACAGCCCGTGATTTCAAATGGAAATTTTCCTTCGAGAACTTGAAGCGTTCGCCAAACTCGGAAAAACTAACTGT] consensusID : consensus_6681#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [CCGCCCACGCGTCCGCACGGGGTGGTACGCTAGAGTGAGTGCGTATGCGTGGACAAAATCTCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAGATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGAGGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAGGTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGAATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAGCGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGTGCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTATGTGTTGACGTGTGTGTCATTTTTTCGGCCCTTTTGCGTGAAAAGCAAGAGCAGAGAAGAACAGTGTAGTGTGTAAGC] [+] EMBL BM597001 [CCGCCCACGCGTCCGCACGGGGTGGTACGCTAGAGTGAGTGCGTATGCGTGGACAAAATCTCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAGATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGAGGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAGGTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGAATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAGCGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGTGCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTATGTGTTGACGTGTGTGTCATTTTTTCGGCCCTTTTGCGTGAAAAGCAAGAGCAGAGAAGAACAGTGTAGTGTGTAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6681#0 CCGGAAAAGTGTGTACACGGGGTGGTACGCTAGAGTGAGTGCGTATGCGTGGACAAAATC 60 consensus_6681#2 CCGCCCACGCGTCCGCACGGGGTGGTACGCTAGAGTGAGTGCGTATGCGTGGACAAAATC 60 consensus_6681#1 -------------------------CCGGCTAGAGTGAGTGCGTATGCGTGGACAAAATC 35 ******************************** consensus_6681#0 TCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAG 120 consensus_6681#2 TCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAG 120 consensus_6681#1 TCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAG 95 ************************************************************ consensus_6681#0 ATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGA 180 consensus_6681#2 ATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGA 180 consensus_6681#1 ATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGA 155 ************************************************************ consensus_6681#0 GGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAG 240 consensus_6681#2 GGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAG 240 consensus_6681#1 GGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAG 215 ************************************************************ consensus_6681#0 GTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGA 300 consensus_6681#2 GTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGA 300 consensus_6681#1 GTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGA 275 ************************************************************ consensus_6681#0 ATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAG 360 consensus_6681#2 ATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAG 360 consensus_6681#1 ATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAG 335 ************************************************************ consensus_6681#0 CGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGT 420 consensus_6681#2 CGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGT 420 consensus_6681#1 CGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGT 395 ************************************************************ consensus_6681#0 GCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTATGTGTTGACGTGTGTGTCATTTTTTCG 480 consensus_6681#2 GCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTATGTGTTGACGTGTGTGTCATTTTTTCG 480 consensus_6681#1 GCGTGTGTTAGTGTGTGT----------GTGTATGTGTTGACGTGTGTGCAAG------- 438 ****************** ********************* * consensus_6681#0 GCCCTTTTGCGTGAAAAGCAAGAGCAGAGAAGAACAGTGTAGTGTGTAAGCGCAGTGCCT 540 consensus_6681#2 GCCCTTTTGCGTGAAAAGCAAGAGCAGAGAAGAACAGTGTAGTGTGTAAGC--------- 531 consensus_6681#1 ----------GTGGAATGTATAATGAG---------GTGTAGT-TATA-GCGCTTTTGGC 477 *** ** * * * ** ******* * ** ** consensus_6681#0 ACTGTTCATTGCTGGTAGCACGAAAAAGGGGCAAAGAAACGGCTTCCAGCTTAGGGACGG 600 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 GATCCCCCCCCCTGG--GCTCCGATTTTG-----ACAGATGGTTTTCCGCTTGTATATG- 529 consensus_6681#0 TATTGGGAAACAAGGAATAGTAACCGGAATAAACCATTGGGCATTGGTGGACTGTTTGCT 660 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 TATTG-------ATGGATTTTTTACGTATTGCATGGTCGATATTTGGTGGAGATCAATTT 582 consensus_6681#0 GGACGGCGCTGTAGCAAGAGAATTAGAGCAAGTCAAGAACGGTGACGTCAGAAAGGA--T 718 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 GGGTGAATATTTT---AGTTTATTAGAACACAGC-----CCGTGATTTCAAATGGAAATT 634 consensus_6681#0 CTGAAAGGATAACGTGTAGCGAACATGGCTGGTCAAACGATCAATGACAGGTTGCTGGCT 778 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 TTCCTTCGAGAACTTGAAGCG-------TTCGCCAAACTCGGAAAAACTAACTGT----- 682 consensus_6681#0 GCACGGCACAGCCTTGCTGGCCAAGGGCTGGCAAAATCCGTGTGCAAGGCTACGACGGAA 838 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 ------------------------------------------------------------ consensus_6681#0 GAAATGATTGGACCGAAGAAAAAACATCTTGATTATTTGGTACATTGCACCAACGAACCG 898 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 ------------------------------------------------------------ consensus_6681#0 AATGTGTCGATTCCTCATTTAGCAACATTGCTGATCGAGCGGTCTCAGAACGCCAATTTG 958 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 ------------------------------------------------------------ consensus_6681#0 GGTCGTGGTATACAAAGCATTGATTACCACCCATCACATGTTGGCCTATGGAAACGAGCG 1018 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 ------------------------------------------------------------ consensus_6681#0 CTTTATTCAATATTTAGCTTCAAGCAATTCATCCTTCCAGTTGAACAACTTTCTCGATAA 1078 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 ------------------------------------------------------------ consensus_6681#0 AGGTGGAGTGGCAAGGCGCTGTCGGTGCTCGTATGGGTTATGATATGTCTCCGTTTATAC 1138 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 ------------------------------------------------------------ consensus_6681#0 GGCGTTACGCAAAATATCTTAACGAGAAGGCGCTATCGTATCGTACAGTGGCGTTCGATT 1198 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 ------------------------------------------------------------ consensus_6681#0 TTTGCAAAATGAAACGTGGAAAAAGAAGAAGGATCCTTGCGCGTGATGCACGCCGACAAG 1258 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 ------------------------------------------------------------ consensus_6681#0 CTTCTGAAGACATTGCCCATTTTGCAAGCGCAGTTAGATTCGTTGCTGGGAGTTTGACTG 1318 consensus_6681#2 ------------------------------------------------------------ consensus_6681#1 ------------------------------------------------------------ consensus_6681#0 TACAGCCAACGATCTCACAAA 1339 consensus_6681#2 --------------------- consensus_6681#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||