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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1339 fasta sequence
[CCGGAAAAGTGTGTACACGGGGTGGTACGCTAGAGTGAGTGCGTATGCGTGGACAAAATCTCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAGATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGAGGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAGGTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGAATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAGCGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGTGCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTATGTGTTGACGTGTGTGTCATTTTTTCGGCCCTTTTGCGTGAAAAGCAAGAGCAGAGAAGAACAGTGTAGTGTGTAAGCGCAGTGCCTACTGTTCATTGCTGGTAGCACGAAAAAGGGGCAAAGAAACGGCTTCCAGCTTAGGGACGGTATTGGGAAACAAGGAATAGTAACCGGAATAAACCATTGGGCATTGGTGGACTGTTTGCT-GGACGGCGCTGTAGCAAGAGAATTAGAGCAAGTCAAGAACGGTGACGTCAGAAAGGATCTGAAAGGATAACGTGTAGCGAACATGGCTGGTCAAACGATCAATGACAGGTTGCTGGCTGCACGGCACAGCCTTGCTGGCCAAGGGCTGGCAAAATCCGTGTGCAAGGCTACGACGGAAGAAATGATTGGACCGAAGAAAAAACATCTTGATTATTTGGTACATTGCACCAACGAACCGAATGTGTCGATTCCTCATTTAGCAACATTGCTGATCGAGCGGTCTCAGAACGCCAATTTGGGTCGTGGTATACAAAGCATTGATTACCACCCATCACATGTTGGCCTATGGAAACGAGCGCTTTATTCAATATTTAGCTTCAAGCAATTCATCCTTCCAGTTGAACAACTTTCTCGATAAAGGTGGAGTGGCAAGGCGCTGTCGGTGCTCGTATGGGTTATGATATGTCTCCGTTTATACGGCGTTACGCAAAATATCTTAACGAGAAGGCGCTATCGTATCGTACAGTGGCGTTCGATTTTTGCAAAATGAAACGTGGAAAAAGAAGAAGGATCCTTGCGCGTGATGCACGCCGACAAGCTTCTGAAGACATTGCCCATTTTGCAAGCGCAGTTAGATTCGTTGCTGGGAGTTTGACTGTACAGCCAACGATCTCACAAA]
[+] EMBL BM599785 [CCGGAAAAGTGTGTACACGGGGTGGTACGCTAGAGTGAGTGCGTATGCGTGGACAAAATCTCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAGATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGAGGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAGGTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGAATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAGCGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGTGCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTATGTGTTGACGTGTGTGTCATTTTTTCGGCCCTTTTGCGTGAAAAGCAAGAGCAGAGAAGAACAGTGTAGTGTGTAAGCGCAGTGCCTACTGTTCATTGCTGGTAGCACGAAAAAGGGGCAAAGAAACGGCTTCCAGCTTAGGGACGGTATTGGGAAACAAGGAATAGTAACCGGAATAAACCATTGGGCATTGGTGGACTGTTTGCTGGGACGGCGCTGTAGCAAGAGAATTAGAGCAAGT ]
[+] EMBL BM584084 [ ccgGCGCAGTGCCTACTGTTCATTGCTGGTAGCACGAAAAAGGGGCAAAGAAACGGCTTCCAGCTTAGGGACGGTATTGGGAAACAAGGAATAGTAACCGGAATAAACCATTGGGCATTGGTGGACTGTTTGCT GGACGGCGCTGTAGCAAGAGAATTAGAGCAAGTCAAGAACGGTGACGTCAGAAAGGATCTGAAAGGATAACGTGTAGCGAACATGGCTGGTCAAACGATCAATGACAGGTTGCTGGCTGCACGGCACAGCCTTGCTGGCCAAGGGCTGGCAAAATCCGTGTGCAAGGCTACGACGGAAGAAATGATTGGACCGAAGAAAAAACATCTTGATTATTTGGTACATTGCACCAACGAACCGAATGTGTCGATTCCTCATTTAGCAACATTGCTGATCGAGCGGTCTCAGAACGCCAATTTGGGTCGTGGTATACAAAGCATTGATTACCACCCATCACATGTTGGCCTATGGAAACGAGCGCTTTATTCAATATTTAGCTTCAAGCAATTCATCCTTCCAGTTGAACAACTTTCTCGATAAAGGTGGAGTGGCAAGGCGCTGTCGGTGCTCGTATGGGTTATGATATGTCTCCGTTTATACGGCGTTACGCAAAATATCTTAACGAGAAGGCGCTATCGTATCGTACAGTGGCGTTCGATTTTTGCAAAATGAAACGTGGAAAAAGAAGAAGGATCCTTGCGC ]
[+] EMBL BM624203 [ ccgGTTTGCT GGACGGCGCTGTAGCAAGAGAATTAGAGCAAGTCAAGAACGGTGACGTCAGAAAGGATCTGAAAGGATAACGTGTAGCGAACATGGCTGGTCAAACGATCAATGACAGGTTGCTGGCTGCACGGCACAGCCTTGCTGGCCAAGGGCTGGCAAAATCCGTGTGCAAGGCTACGACGGAAGAAATGATTGGACCGAAGAAAAAACATCTTGATTATTTGGTACATTGCACCAACGAACCGAATGTGTCGATTCCTCATTTAGCAACATTGCTGATCGAGCGGTCTCAGAACGCCAA TTGGGTCGTGGTATACAAAGCATTGATTACCACCCATCACATGTTGGCCTATGGAAACGAGCGCTTTATTCAATATTTAGCTTCAAGCAATTCATCCTTCCAGTTGAACAACTTTCTCGATAAAGGTGGAGT GCAAGGCGCTGTCGGTGCTCGTATGGGTTATGATATGTCTCCGTTTATACGGCGTTACGCAAAATATCTTAACGAGAAGGCGCTATCGTATCGTACAGTGGCGTTCGATTTTTGCAAAATGAAACGTGG AAAAGAAGAAGGATCCTTGCGCGTGATGCACGCCGACAAGCTTCTGAAGACATTGCCCATTTTGCAAGCGCAGTTAGATTCGTTGCTGGGAGTTTGACTGTACAGCCAACGATCTCACAAA]
consensusID : consensus_6681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[CCGGCTAGAGTGAGTGCGTATGCGTGGACAAAATCTCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAGATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGAGGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAGGTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGAATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAGCGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGTGCGTGTGTTAGTGTGTGTGTGTATGTGTTGACGTGTGTGCAAGGTGGAATGTATAATGAGGTGTAGTTATAGCGCTTTTGGCGATCCCCCCCCCTGGGCTCCGATTTTGACAGATGGTTTTCCGCTTGTATATGTATTGATGGATTTTTTACGTATTGCATGGTCGATATTTGGTGGAGATCAATTTGGGTGAATATTTTAGTTTATTAGAACACAGCCCGTGATTTCAAATGGAAATTTTCCTTCGAGAACTTGAAGCGTTCGCCAAACTCGGAAAAACTAACTGT]
[+] EMBL BM653849 [CCGGCTAGAGTGAGTGCGTATGCGTGGACAAAATCTCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAGATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGAGGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAGGTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGAATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAGCGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGTGCGTGTGTTAGTGTGTGTGTGTATGTGTTGACGTGTGTGCAAGGTGGAATGTATAATGAGGTGTAGTTATAGCGCTTTTGGCGATCCCCCCCCCTGGGCTCCGATTTTGACAGATGGTTTTCCGCTTGTATATGTATTGATGGATTTTTTACGTATTGCATGGTCGATATTTGGTGGAGATCAATTTGGGTGAATATTTTAGTTTATTAGAACACAGCCCGTGATTTCAAATGGAAATTTTCCTTCGAGAACTTGAAGCGTTCGCCAAACTCGGAAAAACTAACTGT]
consensusID : consensus_6681#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence
[CCGCCCACGCGTCCGCACGGGGTGGTACGCTAGAGTGAGTGCGTATGCGTGGACAAAATCTCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAGATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGAGGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAGGTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGAATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAGCGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGTGCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTATGTGTTGACGTGTGTGTCATTTTTTCGGCCCTTTTGCGTGAAAAGCAAGAGCAGAGAAGAACAGTGTAGTGTGTAAGC]
[+] EMBL BM597001 [CCGCCCACGCGTCCGCACGGGGTGGTACGCTAGAGTGAGTGCGTATGCGTGGACAAAATCTCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAGATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGAGGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAGGTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGAATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAGCGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGTGCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTATGTGTTGACGTGTGTGTCATTTTTTCGGCCCTTTTGCGTGAAAAGCAAGAGCAGAGAAGAACAGTGTAGTGTGTAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6681#0 CCGGAAAAGTGTGTACACGGGGTGGTACGCTAGAGTGAGTGCGTATGCGTGGACAAAATC 60
consensus_6681#2 CCGCCCACGCGTCCGCACGGGGTGGTACGCTAGAGTGAGTGCGTATGCGTGGACAAAATC 60
consensus_6681#1 -------------------------CCGGCTAGAGTGAGTGCGTATGCGTGGACAAAATC 35
********************************
consensus_6681#0 TCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAG 120
consensus_6681#2 TCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAG 120
consensus_6681#1 TCGAATTGATGAAGTTTCAGCCGCAAATTTAGCCTCGCTGGGTGAAAAGTGTGAATGAAG 95
************************************************************
consensus_6681#0 ATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGA 180
consensus_6681#2 ATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGA 180
consensus_6681#1 ATAGTCGCTCCGTGCCTATTCGCTGAAGCTGTATGCGAACGTAAAAGTGTTCGGCAAGGA 155
************************************************************
consensus_6681#0 GGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAG 240
consensus_6681#2 GGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAG 240
consensus_6681#1 GGAGGGTAACATATATGCCGTAGATTGGTTGCATCGCAGGCATTACGACACGAAGACAAG 215
************************************************************
consensus_6681#0 GTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGA 300
consensus_6681#2 GTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGA 300
consensus_6681#1 GTGCTGAATTGGGTGGTGGAACCATTCGCTGGAACACACGTCCGTGGCAGCAGTGGTCGA 275
************************************************************
consensus_6681#0 ATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAG 360
consensus_6681#2 ATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAG 360
consensus_6681#1 ATTGAAAGAAGATTAATTACGGCATTTTTCGTACTCGCTGTTTTGATAGGTGACCCGGAG 335
************************************************************
consensus_6681#0 CGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGT 420
consensus_6681#2 CGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGT 420
consensus_6681#1 CGTGGGAAGTTTCTGGCAGAAGAAATTGTCCCGCATCATTGTGCGCCTGTACGGTTGAGT 395
************************************************************
consensus_6681#0 GCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTATGTGTTGACGTGTGTGTCATTTTTTCG 480
consensus_6681#2 GCGTGTGTTAGTGTGTGTGTGTGTGTGTGTGTATGTGTTGACGTGTGTGTCATTTTTTCG 480
consensus_6681#1 GCGTGTGTTAGTGTGTGT----------GTGTATGTGTTGACGTGTGTGCAAG------- 438
****************** ********************* *
consensus_6681#0 GCCCTTTTGCGTGAAAAGCAAGAGCAGAGAAGAACAGTGTAGTGTGTAAGCGCAGTGCCT 540
consensus_6681#2 GCCCTTTTGCGTGAAAAGCAAGAGCAGAGAAGAACAGTGTAGTGTGTAAGC--------- 531
consensus_6681#1 ----------GTGGAATGTATAATGAG---------GTGTAGT-TATA-GCGCTTTTGGC 477
*** ** * * * ** ******* * ** **
consensus_6681#0 ACTGTTCATTGCTGGTAGCACGAAAAAGGGGCAAAGAAACGGCTTCCAGCTTAGGGACGG 600
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 GATCCCCCCCCCTGG--GCTCCGATTTTG-----ACAGATGGTTTTCCGCTTGTATATG- 529
consensus_6681#0 TATTGGGAAACAAGGAATAGTAACCGGAATAAACCATTGGGCATTGGTGGACTGTTTGCT 660
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 TATTG-------ATGGATTTTTTACGTATTGCATGGTCGATATTTGGTGGAGATCAATTT 582
consensus_6681#0 GGACGGCGCTGTAGCAAGAGAATTAGAGCAAGTCAAGAACGGTGACGTCAGAAAGGA--T 718
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 GGGTGAATATTTT---AGTTTATTAGAACACAGC-----CCGTGATTTCAAATGGAAATT 634
consensus_6681#0 CTGAAAGGATAACGTGTAGCGAACATGGCTGGTCAAACGATCAATGACAGGTTGCTGGCT 778
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 TTCCTTCGAGAACTTGAAGCG-------TTCGCCAAACTCGGAAAAACTAACTGT----- 682
consensus_6681#0 GCACGGCACAGCCTTGCTGGCCAAGGGCTGGCAAAATCCGTGTGCAAGGCTACGACGGAA 838
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 ------------------------------------------------------------
consensus_6681#0 GAAATGATTGGACCGAAGAAAAAACATCTTGATTATTTGGTACATTGCACCAACGAACCG 898
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 ------------------------------------------------------------
consensus_6681#0 AATGTGTCGATTCCTCATTTAGCAACATTGCTGATCGAGCGGTCTCAGAACGCCAATTTG 958
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 ------------------------------------------------------------
consensus_6681#0 GGTCGTGGTATACAAAGCATTGATTACCACCCATCACATGTTGGCCTATGGAAACGAGCG 1018
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 ------------------------------------------------------------
consensus_6681#0 CTTTATTCAATATTTAGCTTCAAGCAATTCATCCTTCCAGTTGAACAACTTTCTCGATAA 1078
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 ------------------------------------------------------------
consensus_6681#0 AGGTGGAGTGGCAAGGCGCTGTCGGTGCTCGTATGGGTTATGATATGTCTCCGTTTATAC 1138
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 ------------------------------------------------------------
consensus_6681#0 GGCGTTACGCAAAATATCTTAACGAGAAGGCGCTATCGTATCGTACAGTGGCGTTCGATT 1198
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 ------------------------------------------------------------
consensus_6681#0 TTTGCAAAATGAAACGTGGAAAAAGAAGAAGGATCCTTGCGCGTGATGCACGCCGACAAG 1258
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 ------------------------------------------------------------
consensus_6681#0 CTTCTGAAGACATTGCCCATTTTGCAAGCGCAGTTAGATTCGTTGCTGGGAGTTTGACTG 1318
consensus_6681#2 ------------------------------------------------------------
consensus_6681#1 ------------------------------------------------------------
consensus_6681#0 TACAGCCAACGATCTCACAAA 1339
consensus_6681#2 ---------------------
consensus_6681#1 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||