These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 868 fasta sequence [CCGCCCATTTGCAGCATATTTTGTGGTTTGACCAGTTTCACTACCAAGCATCATTTCGTGCGGGCCGCCTTGGAGGCGGTCTGCTTCCAGACGCGCGACATTATCGAGGCGATGAAGAAGGACTGCGGCATAAACCTTAACAAGCTCCACACGGACGGTATCATGGCGAGCAACAGCCTTCTAATGCAGCTGCAGGCGGATCTGAGCGGCATTCCTGTGTTGAGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCGATGGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTGCAGCGCAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTGCTTGCCTCGATACCGGCCGGTCTGTTCCTGGCCACGACCTTCCTGATGTTGGTTCACTCGCAACGGCGGTGATTAGGTGCATCGACCGACACAAAGGCGACATACAACGAGCAGGCGTATGTCGACCTGCTTTCAACTAGTCTGTTAAACCCGTTAACAATCCAGTTTCGGATACGTTCCGTACACATTCGTCGCGATAAAAGACAGGGCCACAATGGCCAAAGCGCGTGCCCAGGTGCTATAGTTAGCTTAGATGCTGCAACGAACTTGCAAATCGTTGCTGCTGTTGTTGAAAGCTACTCA-GGAAAAAGTTTATATGGCAAAACAAAGCCCGTTCTCAAAAGGTGCTACTTTTGACATCCCTTTTGTTCCGTAGAAGGTACTTTTG] [+] EMBL BM593258 [CCGCCCATTTGCAGCATATTTTGTGGTTTGACCAGTTTCACTACCAAGCATCATTTCGTGCGGGCCGCCTTGGAGGCGGTCTGCTTCCAGACGCGCGACATTATCGAGGCGATGAAGAAGGACTGCGGCATAAACCTTAACAAGCTCCACACGGACGGTATCATGGCGAGCAACAGCCTTCTAATGCAGCTGCAGGCGGATCTGAGCGGCATTCCTGTGTTGAGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCGATGGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTGCAGCGCAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTGCTTGCCTCGATACCGGCCGGTCTGTTCCTGGCCACGACCTTCCTGATGTTGGTTCACTCGCAACGGCGGTGATTAGGTGCATCGACCGACACAAAGGCGACATACAACGAGCAGGCGTATGTCGACCTGCTTTCAACTAGTCTGTTAAACCCGTTAA ] [+] EMBL BM614460 [CCGCCCATTTGCAGCATATTTTGTGGTTTGACCAGTTTCACTACCAAGCATCATTTCGTGCGGGCCGCCTTGGAGGCGGTCTGCTTCCAGACGCGCGACATTATCGAGGCGATGAAGAAGGACTGCGGCATAAACCTTAACAAGCTCCACACGGACGGTATCATGGCGAGCAACAGCCTTCTAATGCAGCTGCAGGCGGATCTGAGCGGCATTCCTGTGTTGAGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCGATGGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTGCAGCGCAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTGCTTGCCTCGATACCGGCCG ] [+] EMBL BM585265 [ ccgGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCGATGGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTGCAGCGCAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTGCTTGCCTCGATACCGGCCGGTCTGTTCCTGGCCACGACCTTCCTGATGTTGGTTCACTCGCAACGGCGGTGATTAGGTGCATCGACCGACACAAAGGCGACATACAACGAGCAGGCGTATGTCGACCTGCTTTCAACTAGTCTGTTAAACCCGTTAACAATCCAGTTTCGGATACGTTCCGTACACATTCGTCGCGATAAAAGACAGGGCCACAATGGCCAAAGCGCGTGCCCAGGTGCTATAGTTAGCTTAGATGCTGCAACGAACTTGCAAATCGTTGCTGCTGTTGTTGAAAGCTACTCA GGAAAAAGTTTATATGGCAAAACAAAGCCCGTTCTCAAAAGGTGCTACTTTTGACATCCCTTTTGTTCCGTAGAAGGTACTTTTG] [+] EMBL BM618213 [ GCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTGCAGCGCAGTTTTGGCTGGGCAGTTTCAAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTGCTAGCATCGATACCGGCCGGTCTGTTCCTGGCCACGACCTTCCTGATGTTGGTTCACTCGCAACGGCGGTGATTAGGTGCATCGACCGGCACAAAGGCGACATACAACGA GCTTATGTCGACCTGCTTTCAACTAGTCTGTTAAACCCGTTAACAATCCAGTTTCGGATACGTTCCGAACACATTCGTCGCGATAAAAGACAGGGCCACAATGGCCAAAGCGCGTGCCCAGGTGCTATAGCTAGCTTAGATGCTGCAACGAACCTGCAAATCGTTGCTGCTGTTGTTGAAAGCTACTCATGGAAAAAGTGTATATGGTAAAACAAAGCCCGTTCTCAAAAGGTGCTACTTTTGAC ] consensusID : consensus_6682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CAAGAATCGGCACGAGGCTTATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGTTTGTAACCGGCAGTGAGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCGATGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTTGCAGCGCAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTTGCTTGGCCTCGATACCGGCCGGTCTNGTTCCTGGCCACGAACCTTCCGTGATGTTCGGTTCACTCGCAAACGGCCGGTGATTAGGTGGCCATCGACCGACACAAAAGGCGACTAGTACAACGNAGGCAGGCGTAATTGTCGACCTGCTTTGCAACTAGTCTGTTAAACCCGGTTAACGAATCCAGTTACGGGGATACGTTCCGTACACAAT] [+] EMBL BX468696 [CAAGAATCGGCACGAGGCTTATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGTTTGTAACCGGCAGTGAGGACGGAGGTGCACGAACCGGCTGCTCTCGGGACGGCGATGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAGCTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCGACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTTGCAGCGCAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTTTGCTTGGCCTCGATACCGGCCGGTCTNGTTCCTGGCCACGAACCTTCCGTGATGTTCGGTTCACTCGCAAACGGCCGGTGATTAGGTGGCCATCGACCGACACAAAAGGCGACTAGTACAACGNAGGCAGGCGTAATTGTCGACCTGCTTTGCAACTAGTCTGTTAAACCCGGTTAACGAATCCAGTTACGGGGATACGTTCCGTACACAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6682#0 CCGCCCATTTGCAGCATATTTTGTGGTTTGACCAGTTTCACTACCAAGCATCATTTCGTG 60 consensus_6682#1 ------------------------------------------------------------ consensus_6682#0 CGGGCCGCCTTGGAGGCGGTCTGCTTCCAGACGCGCGACATTATCGAGGCGATGAAGAAG 120 consensus_6682#1 ------------------------------------------------------------ consensus_6682#0 GACTGCGGCATAAACCTTAACAAGCTCCACACGGACGGTATCATGGCGAGCAACAGCCTT 180 consensus_6682#1 -----------------CAAGAATCGGCACGAGGCTTATGTTGGAGCG-GCCGCAACATG 42 ** ** * *** ** * * *** ** ** * * consensus_6682#0 CTAATGCAGCTGCAGGCGGATCTGAGCGGCATTCCTGTGTTGAGGACGGAGGTGCACGAA 240 consensus_6682#1 CC--TGTTTTTTTTTTTTTTTTTTGTTTGTAA-CCGGCAGTGAGGACGGAGGTGCACGAA 99 * ** * * * * * ** * ******************** consensus_6682#0 CCGGCTGCTCTCGGGACGGCGATGGCCGCTGCACAGGCGAACGGGGTGGATCTGTACAAG 300 consensus_6682#1 CCGGCTGCTCTCGGGACGGCGATG-CCGCTGCACAGGCGAACGGGGTGGATCTGTACAAG 158 ************************ *********************************** consensus_6682#0 CTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCG 360 consensus_6682#1 CTGGAGGCGGAAATCCGTGGCTACGCAGGTGTTCAATCGCACCATGAAACATTCCTTCCG 218 ************************************************************ consensus_6682#0 ACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGT-GCAGCG 419 consensus_6682#1 ACCACCACCGAGGAGGAACGGAACGCTCGGTACACCAAGTGGAAAATGGCAGTTGCAGCG 278 ***************************************************** ****** consensus_6682#0 CAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTT 479 consensus_6682#1 CAGTTTGGGCTGGGCAGTTTCGAAGAAGAGTGAAGCAATGACGGACGAACGCTACAGCTT 338 ************************************************************ consensus_6682#0 -GCTTG-CCTCGATACCGGCCGGTCTG-TTCCTGGCCACGA-CCTTCC-TGATGTT-GGT 533 consensus_6682#1 TGCTTGGCCTCGATACCGGCCGGTCTNGTTCCTGGCCACGAACCTTCCGTGATGTTCGGT 398 ***** ******************* ************* ****** ******* *** consensus_6682#0 TCACTCGCAA-CGGC-GGTGATTAGGTG--CATCGACCGACACAAA-GGCGAC--ATACA 586 consensus_6682#1 TCACTCGCAAACGGCCGGTGATTAGGTGGCCATCGACCGACACAAAAGGCGACTAGTACA 458 ********** **** ************ **************** ****** **** consensus_6682#0 ACGA--GCAGGCGTA--TGTCGACCTGCTTT-CAACTAGTCTGTTAAACCCG-TTAAC-A 639 consensus_6682#1 ACGNAGGCAGGCGTAATTGTCGACCTGCTTTGCAACTAGTCTGTTAAACCCGGTTAACGA 518 *** ********* ************** ******************** ***** * consensus_6682#0 ATCCAGTTTCGG--ATACGTTCCGTACACATTCGTCGCGATAAAAGACAGGGCCACAATG 697 consensus_6682#1 ATCCAGTTACGGGGATACGTTCCGTACACAAT---------------------------- 550 ******** *** **************** * consensus_6682#0 GCCAAAGCGCGTGCCCAGGTGCTATAGTTAGCTTAGATGCTGCAACGAACTTGCAAATCG 757 consensus_6682#1 ------------------------------------------------------------ consensus_6682#0 TTGCTGCTGTTGTTGAAAGCTACTCAGGAAAAAGTTTATATGGCAAAACAAAGCCCGTTC 817 consensus_6682#1 ------------------------------------------------------------ consensus_6682#0 TCAAAAGGTGCTACTTTTGACATCCCTTTTGTTCCGTAGAAGGTACTTTTG 868 consensus_6682#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||