cluster # 6691

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Anopheles gambiae
cluster # 6691 cluster # 6691 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6691#0 length = 707 sequences # 3

consensus_6691#1 length = 649 sequences # 1
consensus_6691#2 length = 564 sequences # 1

consensusID : consensus_6691#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 707
fasta sequence

                              [CCGGTCACTGGCCAGCCAGTACGCATGGTTAGTGTCGTCTATTCGGTTCGCGCGTATCAATCGGCAAGCACCAGGCCAGCCTCTCAGTGATTTACGTTTGTGAGTAGATGCTATACGCATTCGGAACGCAGCAAAAAGCAAGGCAGCTGATAACGTGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAACGGAGTGTGCACGGTTGTGATTGACTAGAGAGGCAGCAACTACAATCACCAATACGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCAGGGTCTACGCATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTGAAGCACATTCAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAACTATGATCGCGAGGTGCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGGTTGGCTCGATTCCGGACTGGGGTACGCAACGGCGTCTATCCGGCCCATCTACAAAGCCTGTGGCTGGTGATAGCGAT-AGCGGTGGGGTTACATTTTACACAACGGCACGTACCATTCGACCTAGTGAACAAATGGCTATCAGTTTTACCAGGCGATTCATTGCAATGGCAGCTGACGGCATGCTCACTAGCTGGGTTTAA]

[+] EMBL BM633698             [CCGGTCACTGGCCAGCCAGTACGCATGGTTAGTGTCGTCTATTCGGTTCGCGCGTATCAATCGGCAAGCACCAGGCCAGCCTCTCAGTGATTTACGTTTGTGAGTAGATGCTATACGCATTCGGAACGCAGCAAAAAGCAAGGCAGCTGATAACGTGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGgtttggaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM594795             [      ccgGGCCAGCCAGTACGCATGGTTAGTGTCGTCTATTCGGTTCGCGCGTATCAATCGGCAAGCACCAGGCCAGCCTCTCAGTGATTTACGTTTGTGAGTAGATGCTATACGCATTCGGAACGCAGCAAAAAGCAAGGCAGCTGATAACGTGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAACGGAGTGTGCACGGTTGTGATTGACTAGAGAGGCAGCAACTACAATCACCAATACGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCAGGGTCTACGCATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTGAAGCACATTCAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAACTATGATCGCGAGGTGCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGGTTGGCTCGATTCCGGACTGGGGTACGCAACGGCGTCTATCCGGCCCATCTACAAAGCCTGTGGCTGGTGATAGCGAT AGCGGTGGGGTTACATTTTACACAACGGCACGTACCATTCGACCTAGTGAACAAATGGCTATCAGTTTTACCAGGCGATTCATTGCAATGGCAGCTGACGGCATGCTCACTAGCTGGGTT   ]
[+] EMBL BM609710             [           CCGGCCAGTACGCATGGTTAGTGTCGTCTATTCGGTTCGCGCGTATCAATCGGCAAGCACCAGGCCAGCCTCTCAGTGATCTACGTTTGTGAGTAGCTGGTATACGCATTCGGAACGCAGCAAAAAGCAAGGCAGCTGATAACGTGAGATTCGAATATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAACGGAGTGTGCACGGTTGTGATTGACTAGAGAGGCAGCAACTACAATCACCAATACGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCAGGGTCTACGCATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTGAAGCACATTCAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAACTATGATCGCGAGGTGTTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGGTTGGCTCGATTCAGGACTGGGGTACGCAACGGCGTCTATCCGGCCCATCTACAAAGCCTGTGGCTGGTGATAGCGATAAGCGGTGGGGTTACATTTTACACAACGGCACGTACCATTCGACCTAGTGAACAAATGGCTATCAGTTTTACCAGGCGATTCATTGCAATGGCAGCTGACGGCATGCTCACTAGCAGGGGTTAA]




>consensus_6691#0
CCGGTCACTGGCCAGCCAGTACGCATGGTTAGTGTCGTCTATTCGGTTCGCGCGTATCAA
TCGGCAAGCACCAGGCCAGCCTCTCAGTGATTTACGTTTGTGAGTAGATGCTATACGCAT
TCGGAACGCAGCAAAAAGCAAGGCAGCTGATAACGTGAGATTCGAACATTTTTATCAGCA
TTGACATATCACCGCAATCGTTGAATTTCTACAACGGAGTGTGCACGGTTGTGATTGACT
AGAGAGGCAGCAACTACAATCACCAATACGTATCCCGCCTGAAGGTTGGAAGTTGAGCTA
TAAGAGAGGCCGTGTTGCAGGGTCTACGCATTGTGATCGACTATTGCTGCGTGTTTAAAC
CGGTAACGTGCAGCCGGTGCGATGGCTGAAGCACATTCAGCTGTTGCATTCTCGTTCTCA
ATCACTCACGAAGGATGGGACATTAACTATGATCGCGAGGTGCTGGACCTCGTCTGGCAG
TCGGGTGTGCGATCGTGGAAGAAACGGTTGGCTCGATTCCGGACTGGGGTACGCAACGGC
GTCTATCCGGCCCATCTACAAAGCCTGTGGCTGGTGATAGCGATAGCGGTGGGGTTACAT
TTTACACAACGGCACGTACCATTCGACCTAGTGAACAAATGGCTATCAGTTTTACCAGGC
GATTCATTGCAATGGCAGCTGACGGCATGCTCACTAGCTGGGTTTAA

consensusID : consensus_6691#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence

                              [CCGCGTAGTCGGAGTTCCGTTTTCTCTGTTTTCAGTCGTGTTTGCTTTGCGTAACCAATGTGTGATGGTAATTGAATTAAACGAATCAAACTACGCGTAATTAGAAAAGTGTGTTTATGCTGTAAACGATTTAATAAACATTTATCAGTGGTCAATCCGATACGGGATTGAGTAGTCTTTTTTTTGTGTGTGCTAATAGAGCACAACAGCGACGAGTGAATAGGTGTTGTTCGTGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGAATGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAACGGAGTGTGCACGGTTGTGATTGACTAGAGAGGCAGCAACTACAATCACCAATACGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCTGGGTCTACGCATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTGAAGCACATTCAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAACTATGATCGCGAGGTGCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGGTTG]

[+] EMBL BM588423             [CCGCGTAGTCGGAGTTCCGTTTTCTCTGTTTTCAGTCGTGTTTGCTTTGCGTAACCAATGTGTGATGGTAATTGAATTAAACGAATCAAACTACGCGTAATTAGAAAAGTGTGTTTATGCTGTAAACGATTTAATAAACATTTATCAGTGGTCAATCCGATACGGGATTGAGTAGTCTTTTTTTTGTGTGTGCTAATAGAGCACAACAGCGACGAGTGAATAGGTGTTGTTCGTGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGAATGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAACGGAGTGTGCACGGTTGTGATTGACTAGAGAGGCAGCAACTACAATCACCAATACGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCTGGGTCTACGCATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTGAAGCACATTCAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAACTATGATCGCGAGGTGCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGGTTG]




>consensus_6691#1
CCGCGTAGTCGGAGTTCCGTTTTCTCTGTTTTCAGTCGTGTTTGCTTTGCGTAACCAATG
TGTGATGGTAATTGAATTAAACGAATCAAACTACGCGTAATTAGAAAAGTGTGTTTATGC
TGTAAACGATTTAATAAACATTTATCAGTGGTCAATCCGATACGGGATTGAGTAGTCTTT
TTTTTGTGTGTGCTAATAGAGCACAACAGCGACGAGTGAATAGGTGTTGTTCGTGCACGA
AAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGAATGAGAT
TCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAACGGAGTG
TGCACGGTTGTGATTGACTAGAGAGGCAGCAACTACAATCACCAATACGTATCCCGCCTG
AAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCTGGGTCTACGCATTGTGATCGAC
TATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTGAAGCACATTCAGC
TGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAACTATGATCGCGAGGT
GCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGGTTG

consensusID : consensus_6691#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [CCGCAATCCGATACGGGATTGAGTAGTCTTTTTTTTGTGTGTGCTAATAGAGCACAACAGCGACGAGTGAATAGGTGTTGTTCGTGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGAACGATCGAATGCAAACCAAAACGAATGCACATCCCCCCTTTCAAACTTGAAAAGAAGTTTGTTATGCAATGGTAAAAAATAACAACACAAAAAAAGCCATCGTGACCACAAGCGCGGCGTTTTCTCATCGGTCAAAGTCCTCTTCCCCGTAGACAATCGGCAGTGGCAGTGCGTACAATGCTGAAGAACAGCTCAGCCGCTCACAAACACTCGCACGAACGAACGCATGGAAAAGGAACGCCACGAGTATGAAACTGCGGCAAACAAAACAACATCCGTCGCCAATGGACCAATGCTCCATCAGCCCCATACCTGGCCATATGTGTGTATGTGTGTGGTGGTGAAAATGTCCGCCTAGCCACAGCCTTTCGAGGTCGTCAGATCGTTGAATCTATCTAGCTGCTGCGTCAACCCATTCGT]

[+] EMBL BM590708             [CCGCAATCCGATACGGGATTGAGTAGTCTTTTTTTTGTGTGTGCTAATAGAGCACAACAGCGACGAGTGAATAGGTGTTGTTCGTGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGAACGATCGAATGCAAACCAAAACGAATGCACATCCCCCCTTTCAAACTTGAAAAGAAGTTTGTTATGCAATGGTAAAAAATAACAACACAAAAAAAGCCATCGTGACCACAAGCGCGGCGTTTTCTCATCGGTCAAAGTCCTCTTCCCCGTAGACAATCGGCAGTGGCAGTGCGTACAATGCTGAAGAACAGCTCAGCCGCTCACAAACACTCGCACGAACGAACGCATGGAAAAGGAACGCCACGAGTATGAAACTGCGGCAAACAAAACAACATCCGTCGCCAATGGACCAATGCTCCATCAGCCCCATACCTGGCCATATGTGTGTATGTGTGTGGTGGTGAAAATGTCCGCCTAGCCACAGCCTTTCGAGGTCGTCAGATCGTTGAATCTATCTAGCTGCTGCGTCAACCCATTCGT]




>consensus_6691#2
CCGCAATCCGATACGGGATTGAGTAGTCTTTTTTTTGTGTGTGCTAATAGAGCACAACAG
CGACGAGTGAATAGGTGTTGTTCGTGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCC
ACGGCAGCGGGTGGGTGGTACCGAACGATCGAATGCAAACCAAAACGAATGCACATCCCC
CCTTTCAAACTTGAAAAGAAGTTTGTTATGCAATGGTAAAAAATAACAACACAAAAAAAG
CCATCGTGACCACAAGCGCGGCGTTTTCTCATCGGTCAAAGTCCTCTTCCCCGTAGACAA
TCGGCAGTGGCAGTGCGTACAATGCTGAAGAACAGCTCAGCCGCTCACAAACACTCGCAC
GAACGAACGCATGGAAAAGGAACGCCACGAGTATGAAACTGCGGCAAACAAAACAACATC
CGTCGCCAATGGACCAATGCTCCATCAGCCCCATACCTGGCCATATGTGTGTATGTGTGT
GGTGGTGAAAATGTCCGCCTAGCCACAGCCTTTCGAGGTCGTCAGATCGTTGAATCTATC
TAGCTGCTGCGTCAACCCATTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6691#0      ------------------------------------------------------------
consensus_6691#1      CCGCGTAGTCGGAGTTCCGTTTTCTCTGTTTTCAGTCGTGTTTGCTTTGCGTAACCAATG 60
consensus_6691#2      ------------------------------------------------------------
                                                                                  

consensus_6691#0      ------------------------------------------------------------
consensus_6691#1      TGTGATGGTAATTGAATTAAACGAATCAAACTACGCGTAATTAGAAAAGTGTGTTTATGC 120
consensus_6691#2      ------------------------------------------------------------
                                                                                  

consensus_6691#0      --------------------CCGGTCACTGGCCAGCCAGTACGCATGGTTAGTGTCGTCT 40
consensus_6691#1      TGTAAACGATTTAATAAACATTTATCAGTGGTCAATCCG-ATACGGGATT-GAGTAGTCT 178
consensus_6691#2      -----------------------------CCGCAATCCG-ATACGGGATT-GAGTAGTCT 29
                                                      **  * * *  *  * ** * ** ****

consensus_6691#0      ATTCGGTTCGCGCGTATCAATCGGCAAGCACCAGGCCAGCCTCTCAGTGATTTACGTTTG 100
consensus_6691#1      TTTT--TTTGTGTGTGCTAATAG---AGCACAACAGCGACGAGTGAATAGGTGTTGTTCG 233
consensus_6691#2      TTTT--TTTGTGTGTGCTAATAG---AGCACAACAGCGACGAGTGAATAGGTGTTGTTCG 84
                       **   ** * * **   *** *   ***** *   *  *   * * *   *   *** *

consensus_6691#0      TGAGTAGATGCTATA----CGCATTCGGAACGCAGCAAAAAGCAAGGCAGCTGATAACG- 155
consensus_6691#1      TGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGA 293
consensus_6691#2      TGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGA 144
                      **     * ** *       *** * *    *   **        **  * ** ** ** 

consensus_6691#0      -TGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAA 214
consensus_6691#1      ATGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAA 353
consensus_6691#2      ACGA---TCGAATGCAA--ACCAAAACGAATGCA-CATCCCCCCTTTCAAACTTGAAAAG 198
                        **   *****       * **  *   *   * ** * *     *  ** **  * * 

consensus_6691#0      CGGAGTGT---GCA-CGGTTGTGATTGAC--TAGAGAGGCAGCAACTACAATCACCAATA 268
consensus_6691#1      CGGAGTGT---GCA-CGGTTGTGATTGAC--TAGAGAGGCAGCAACTACAATCACCAATA 407
consensus_6691#2      AAGTTTGTTATGCAATGGTAAAAAATAACAACACAAAAAAAGCCATCGTGACCACAAGCG 258
                        *  ***   ***  ***    * * **   * * *   *** *     * *** *   

consensus_6691#0      CGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCAGGGTCTACG 328
consensus_6691#1      CGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCTGGGTCTACG 467
consensus_6691#2      CG-GCGTTTTCTCATCGGTCAAAGTCCTCTTCCCCGTAGACAATCGGCAGTGGCAGTGCG 317
                      **        ** *  * *  ****     *    *         *     **   * **

consensus_6691#0      CATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTG 388
consensus_6691#1      CATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTG 527
consensus_6691#2      TACAATGCTGAAGAACAGCTCAGCCGCTCACAAACACTCGCACGAACGAACGCATGGAAA 377
                       *   ** *  *  *  ***  *    * *        **  *   **     ****   

consensus_6691#0      AAGCACATT-CAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAAC 447
consensus_6691#1      AAGCACATT-CAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAAC 586
consensus_6691#2      AGGAACGCCACGAGTATGAAACTGCGGCAAACAA--AACAACATCCGTCGCCAATGGACC 435
                      * * **    *   * *   * *   *    ***  *   **    *  *  *    * *

consensus_6691#0      TATGATCGCGAGGTGCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGG 507
consensus_6691#1      TATGATCGCGAGGTGCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGG 646
consensus_6691#2      AATGCTCCATCAGCCCCATACCTGGCCATATGTGTGTATGTGTG-TGGTGGTGAAAATGT 494
                       *** **     *  *   **** * *        *  **** * * ****   *** * 

consensus_6691#0      TTGGCTCGATTCCGGACTG-GGGTACGCAACGGCGTCTATCCGGCCCATCTACAAAGCCT 566
consensus_6691#1      TTG--------------------------------------------------------- 649
consensus_6691#2      CCGCCTAGCCACAGCCTTTCGAGGTCGTCAGATCGTTGAATCTATCTAGCTGCTGCGTCA 554
                        *                                                         

consensus_6691#0      GTGGCTGGTGATAGCGATAGCGGTGGGGTTACATTTTACACAACGGCACGTACCATTCGA 626
consensus_6691#1      ------------------------------------------------------------
consensus_6691#2      ACCCATTCGT-------------------------------------------------- 564
                                                                                  

consensus_6691#0      CCTAGTGAACAAATGGCTATCAGTTTTACCAGGCGATTCATTGCAATGGCAGCTGACGGC 686
consensus_6691#1      ------------------------------------------------------------
consensus_6691#2      ------------------------------------------------------------
                                                                                  

consensus_6691#0      ATGCTCACTAGCTGGGTTTAA 707
consensus_6691#1      ---------------------
consensus_6691#2      ---------------------