These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1154 fasta sequence [AAATCAAGAAAGAAAGAAATAGAAAAAGAGAGAGAGAGAGATTATAGATTGAGCGAGAATGTGTGAGAGATGTTACAAAACAAAAAAGAAAAGAAGTTTAAGAGGATAAGTAAAGTGGACGTAATACGTTAACATTGAATTATTGAAGAAAACAAAAAACATTGAAACGTGCTTTTTAAATATTTTCTATATGAAGACATTACATTATATAGATATATATACATATATACAATTACCGAAACGACAAAAGAGGAAACCGGCGAGAAGAAGAAAGAAGAAAAAAAACGGAAATCACAATACACTCACTAAACAAAGCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGCACAAATACACAGCAATCGCATAATGGTTGAATCGGAAGGAAACAAGAAAGTAAAACAAAAAAAACAAAAACAAAACCAAAAGAAAACAAATACAAACAGCATAAAACAAGACGCGAAAGTAGTCAGCGACAATGCGGTGAAACTAAAACAAATCAAAACACACAACAACATGACGACAGCCCGAAGACAAGAGCGTAGTAGGCGCGTTAGCGTTGCCGTTGCGTTAGCGTTGCATAATGCAAACAAACAAAACAAGCAGAAACAAGCGGAAGACGACGCAGTGTTAGCGAAATAGATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATACATAGAGAACGTTAATCTGTAAGAAAAAAAACAAACCCGTGTACAATGCTAAGTCTCTATTCGTTATGACTA-AATGTTAGGATCATGCACCCAGTACGATCATCCCCGCGGTCGAAGCGCGAAACAGCAGTACGGCGGCCATTACCCATTACCTACACACTCGCGTTTCTAAAGCAAAAAGGCTCAGTTTCTGTAATGTTACTCCTGTCACGAAAACACACACATACACACACAGCTAGGCAAAACTAGGTACAGTAACGACCACTTCTCCCTACTATCGTACAATGTCGTTTCTTTCTCTGCCTCACACAGTTTACCCAGCTAGAATCATGCGGATACGCGTTTGCGAACACGCCGTTTATTGCCCCGAACGCTGCTAGTAACTTTCAACACGGAACACGAAATGAATAGTGGTGGTGTGTGGTGGTGTACTGTGCATCAT] [+] EMBL BX614447 [AAATCAAGAAAGAAAGAAATAGAAAAAGAGAGAGAGAGAGATTATAGATTGAGCGAGAATGTGTGAGAGATGTTACAAAACAAAAAAGAAAAGAAGTTTAAGAGGATAAGTAAAGTGGACGTAATACGTTAACATTGAATTATTGAAGAAAACAAAAAACATTGAAACGTGCTTTTTAAATATTTTCTATATGAAGACATTACATTATATAGATATATATACATATATACAATTACCGAAACGACAAAAGAGGAAACCGGCGAGAAGAAGAAAGAAGAAAAAAAACGGAAATCACAATACACTCACTAAACAAAGCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGCACAAATACACAGCAATCGCATAATGGTTGAATCGGAAGGAAACAAGAAAGTAAAACAAAAAAAACAAAAACAAAACCAAAAGAAAACAAATACAAACAGCATAAAACAAGACGCGAAAGTAGTCAGCGA ] [+] EMBL BX611967 [ ATACAATTACCGAAACGACAAAAGAGGAAACCGGCGAGAAGAAGAAAGAAG AAAAAAACGGAAATCACAATACACTCACTAAACAAAGCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGCACAAATACACAGCAATCGCATAATGGTTGAATCGGAAGGAAACAAGAAAGTAAAACAAAAAAAACAAAAACAAAACCAAAAGAAAACAAATACAAACAGCATAAAACAAGACGCGAAAGTAGTCAGCGACAATGCGGTGAAACTAAAACAAATCAAAACACACAACAACATGACGACAGCCCGAAGACAAGAGCGTAGTAGGCGCGTTAGCGTTGCCGTTGCGTTAGCGTTGCATAATGCAAACAAACAAAACAAGCAGAAACAAGCGGAAGACGACGCAGTGTTAGCGAAATAGATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATACATAGAGAACGTTAATCTGTAAGAAAAAAAACAAACCCGTGTACAATGCTAAGTCTCTATTCGTTATGACTA AATGTTAGGATCATGCACCCAGTACGATCATCCCCGCGGTCGAAGCGCGAAACAGCAGTACGGCGGCCATTACCCATTACCTACACACTCGCG ] [+] EMBL BX614932 [ ACGTATAGATATATATACATAGAGAACGTTAATCTGTAAGAAAAAAAACAAACCCTTGTACAATGCTAAGTCTCTATTCGTTACGACTAGAATGTTAGGATCATGCACCCAGTACGATCATCCCCGCGGTCGAAGCGCGAAACAGCAGTACGGCGGCCATTACCCATTACCTACACTCTCGCGTTTCTAAAGCAAAAAGGCTCAGTTTCTGTAATGTTACTCCTGTCACGAAAACACACACATACACACACAGCTAGGCAAAACTAGGTACAGTAACGACCACTTCTCCCTACTATCGTACAATGTCGTTTCTTTCTCTGCCTCACACAGTTTACCCAGCTAGAATCATGCGGATACGCGTTTGCGAACACGCCGTTTATTGCCCCGAACGCTGCTAGTAACTTTCAACACGGAACACGAAATGAATAGTGGTGGTGTGTGGTGGTGTACTGTGCATCAT] consensusID : consensus_6694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 935 fasta sequence [CCGAGGAAACTGACGGGAAGAAGAAGAAAAAAGGAAATCACAATACACTCACAAAACAAAACGCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGCACAAATACACAGCAATCGCATAATGGTTGGATCGGAAGAAAACAAGAAAGTAAAACAAAGAAACAAAACCAAAAGAAAACAAACACAAACAGCATAAAACAAGACGCGAAAGTAGTCAGCGACAATGCGGTGAAACAAAAACAAATCAAAACACACACAACAAACGGACGACAGCCGGAAGACAAGAGCAAACGTAGTAGGCGCAAACGTTGCCGTTGCGTTAGCGTTGCAGAATGCAAACAAACAAAACAAGCAGAAACAAGCGGAAGACGACGCAGTGTTAGCGAAATAGATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATACATAGAGAACGTTAATCTGTAAGAAAAACAAACCCGTGTACAATGCTAAGTCTCTATTCGTTACGACTAGAATGTTAGGATCATGCACACCCAGTACGATCATCCCCGCGGATCGAAGCGCGAAACAGCAGTACGGCGGCCATTACCATTACCTACACTCTCGCGTTTCTAAAGCAAAAAGGCTCAGTTTCTGTAATGGTACTCCTGTCACGAAAACACTCACACTCACACACACACACAGAGGCAAAACTAGGTACAGTAACGACCACTTCTCCCTACTATCGTACAATGTCGTTTCCTTCTCTGCCTCACCAGTTTACCCAGCTAGAATCATGCCCCGAACGCTGCTAGTAACTTTCAACACGGAACACGAAATGAATAGTGGTGCTGTGTGGTGGTGTACTGTGCATCATTAACTTTAGTTTACCTGTTTCAGTTATCTTCGCGCTTTCTCCGCACCAACCAAGCGCGCCACAAT] [+] EMBL BM635791 [CCGAGGAAACTGACGGGAAGAAGAAGAAAAAAGGAAATCACAATACACTCACAAAACAAAACGCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGCACAAATACACAGCAATCGCATAATGGTTGGATCGGAAGAAAACAAGAAAGTAAAACAAAGAAACAAAACCAAAAGAAAACAAACACAAACAGCATAAAACAAGACGCGAAAGTAGTCAGCGACAATGCGGTGAAACAAAAACAAATCAAAACACACACAACAAACGGACGACAGCCGGAAGACAAGAGCAAACGTAGTAGGCGCAAACGTTGCCGTTGCGTTAGCGTTGCAGAATGCAAACAAACAAAACAAGCAGAAACAAGCGGAAGACGACGCAGTGTTAGCGAAATAGATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATACATAGAGAACGTTAATCTGTAAGAAAAACAAACCCGTGTACAATGCTAAGTCTCTATTCGTTACGACTAGAATGTTAGGATCATGCACACCCAGTACGATCATCCCCGCGGATCGAAGCGCGAAACAGCAGTACGGCGGCCATTACCATTACCTACACTCTCGCGTTTCTAAAGCAAAAAGGCTCAGTTTCTGTAATGGTACTCCTGTCACGAAAACACTCACACTCACACACACACACAG ] [+] EMBL BX627440 [ AACGGACGACAGCCGGAAGACAAGAGCAAACGTAGTAGGCGCAAACGTTGCCGTTGCGTTAGCGTTGCAGAATGCAAACAAACAAAACAAGCAGAAACAACCGGAAGACGACGCAGTGTTAGCGAAATAGATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATACATAGAGAACGTTAATCTGTAAGAAAAACAAACCCGTGTACAATGCTAAGTCTCTATTCGTTACGACTAGAATGTTAGGATCATGCACACCCAGTACGATCATCCCCGCGGATCGAAGCGCGAAACAGCAGTACGGCGGCCATTACCATTACCTACACTCTCGCGTTTCTAAAGCAAAATGGCTCAGTTTCTGTAATGTTACTCCTGTCACGAAAACACTCACACTCACACACACACAGCTAGGCAAAACTAGGTACAGTAACGACCACTTCTCCCTACTATCGTACAATGTCGTTTCCTTCTCTGCCTCACCAGTTTACCCAGCTAGAATCATGCCCCGAACGCTGCTAGTAACTTTCAACACGGAACACGAAATGAATAGTGGTGCTGTGTGGTGGTGTACTGTGCATCATTAACTTTAGTTTACCTGTTTCAGTTATCTTCGCGCTTTCTCCGCACCAACCAAGCGCGCCACAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6694#0 AAATCAAGAAAGAAAGAAATAGAAAAAGAGAGAGAGAGAGATTATAGATTGAGCGAGAAT 60 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 GTGTGAGAGATGTTACAAAACAAAAAAGAAAAGAAGTTTAAGAGGATAAGTAAAGTGGAC 120 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 GTAATACGTTAACATTGAATTATTGAAGAAAACAAAAAACATTGAAACGTGCTTTTTAAA 180 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 TATTTTCTATATGAAGACATTACATTATATAGATATATATACATATATACAATTACCGAA 240 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 ACGACAAAAGAGGAAACCGGCGAGAAGAAGAAAGAAGAAAAAAAACGGAAATCACAATAC 300 consensus_6694#1 -------CCGAGGAAACTGACGGGAAGAAGAAGAAAAAA-------GGAAATCACAATAC 46 ******** * ** ********* ** ** ************** consensus_6694#0 ACTCACTAAACAAA--GCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGC 358 consensus_6694#1 ACTCACAAAACAAAACGCAAAAGAAACCATAATATGATATAAAGGAACCACATTCGTAGC 106 ****** ******* ******************************************** consensus_6694#0 ACAAATACACAGCAATCGCATAATGGTTGAATCGGAAGGAAACAAGAAAGTAAAACAAAA 418 consensus_6694#1 ACAAATACACAGCAATCGCATAATGGTTGGATCGGAAGAAAACAAGAAAGTAAAACAA-- 164 ***************************** ******** ******************* consensus_6694#0 AAAACAAAAACAAAACCAAAAGAAAACAAATACAAACAGCATAAAACAAGACGCGAAAGT 478 consensus_6694#1 -----AGAAACAAAACCAAAAGAAAACAAACACAAACAGCATAAAACAAGACGCGAAAGT 219 * *********************** ***************************** consensus_6694#0 AGTCAGCGACAATGCGGTGAAACTAAAACAAATCAAAACACACA--ACAACATGACGACA 536 consensus_6694#1 AGTCAGCGACAATGCGGTGAAACAAAAACAAATCAAAACACACACAACAAACGGACGACA 279 *********************** ******************** **** ******* consensus_6694#0 GCCCGAAGACAAGAGC----GTAGTAGGCGCGTTAGCGTTGCCGTTGCGTTAGCGTTGCA 592 consensus_6694#1 GCCGGAAGACAAGAGCAAACGTAGTAGGCGCA--AACGTTGCCGTTGCGTTAGCGTTGCA 337 *** ************ *********** * ************************ consensus_6694#0 TAATGCAAACAAACAAAACAAGCAGAAACAAGCGGAAGACGACGCAGTGTTAGCGAAATA 652 consensus_6694#1 GAATGCAAACAAACAAAACAAGCAGAAACAAGCGGAAGACGACGCAGTGTTAGCGAAATA 397 *********************************************************** consensus_6694#0 GATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATA 712 consensus_6694#1 GATAAATAATAAAAATGTTACATTAAATTATACTCTTATACATACGTATAGATATATATA 457 ************************************************************ consensus_6694#0 CATAGAGAACGTTAATCTGTAAGAAAAAAAACAAACCCGTGTACAATGCTAAGTCTCTAT 772 consensus_6694#1 CATAGAGAACGTTAATCTGTAAGAAAAA---CAAACCCGTGTACAATGCTAAGTCTCTAT 514 **************************** ***************************** consensus_6694#0 TCGTTATGACTA-AATGTTAGGATCATGCAC--CCAGTACGATCATCCCCGCGG-TCGAA 828 consensus_6694#1 TCGTTACGACTAGAATGTTAGGATCATGCACACCCAGTACGATCATCCCCGCGGATCGAA 574 ****** ***** ****************** ********************* ***** consensus_6694#0 GCGCGAAACAGCAGTACGGCGGCCATTACCCATTACCTACACACTCGCGTTTCTAAAGCA 888 consensus_6694#1 GCGCGAAACAGCAGTACGGCGGCCATTACC-ATTACCTACACTCTCGCGTTTCTAAAGCA 633 ****************************** *********** ***************** consensus_6694#0 AAAAGGCTCAGTTTCTGTAATGTTACTCCTGTCACGAAAACACACACAT----ACACACA 944 consensus_6694#1 AAAAGGCTCAGTTTCTGTAATGGTACTCCTGTCACGAAAACACTCACACTCACACACACA 693 ********************** ******************** **** ******* consensus_6694#0 CAGCTAGGCAAAACTAGGTACAGTAACGACCACTTCTCCCTACTATCGTACAATGTCGTT 1004 consensus_6694#1 CACAGAGGCAAAACTAGGTACAGTAACGACCACTTCTCCCTACTATCGTACAATGTCGTT 753 ** ******************************************************* consensus_6694#0 TCTTTCTCTGCCTCACACAGTTTACCCAGCTAGAATCATGCGGATACGCGTTTGCGAACA 1064 consensus_6694#1 TCCTTCTCTGCCTCAC-CAGTTTACCCAGCTAGAATCATGC------------------- 793 ** ************* ************************ consensus_6694#0 CGCCGTTTATTGCCCCGAACGCTGCTAGTAACTTTCAACACGGAACACGAAATGAATAGT 1124 consensus_6694#1 -------------CCCGAACGCTGCTAGTAACTTTCAACACGGAACACGAAATGAATAGT 840 *********************************************** consensus_6694#0 GGTGGTGTGTGGTGGTGTACTGTGCATCAT------------------------------ 1154 consensus_6694#1 GGTGCTGTGTGGTGGTGTACTGTGCATCATTAACTTTAGTTTACCTGTTTCAGTTATCTT 900 **** ************************* consensus_6694#0 ----------------------------------- consensus_6694#1 CGCGCTTTCTCCGCACCAACCAAGCGCGCCACAAT 935 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||