These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 766 fasta sequence [CCGACCAATCGTACCACAGCAACTGCTGCTATTACTACTTCTTTTACTATATCTACTACTACTACTACTATTACTACTACTACTACTTACATCATTGTGATTAGTTTCGCGCATACCGTCCGCTGTTGTTTGCGTGCGGGAGTGCTGGAACGTTGTAAAATATATTATTTAGACATATAATGGCGAGGGTGCGAAGGAGGGAGTACCTCTCCTTCCTTCGCTGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACCCGGTAGTAGTATTTACCGATTGGATGTTAATAATTCTTTCCCAAGTATGTAAATATGCGCTAACTCTCTCACTTTCTCTCAATTTCTCAATCACTTTCGCACATACGCAATGCCGTCGTTTGATGCTACTTCTTTGCGCGATTGTGCGCGCAAAAACTGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTATGTTGCCGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCTCTAGAGCTCTAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGCAGGCGAAGGCGCGACCATGCGTCCATACTAAGAAAAAAAAAACAAAGTGCTTTAAAAACTGTGGAAACCTCGGTGTAACCTTGAGATGATTTAGGGAGAAAAAGAAAACATAGAACGACAACAAAAAACATAAGATACACATACACACACGCAAACAATTGTATGTTTTTAATGATATCAATAAAGCAAAAACCACA] [+] EMBL BM577067 [CCGACCAATCGTACCACAGCAACTGCTGCTATTACTACTTCTTTTACTATATCTACTACTACTACTACTATTACTACTACTACTACTTACATCATTGTGATTAGTTTCGCGCATACCGTCCGCTGTTGTTTGCGTGCGGGAGTGCTGGAACGTTGTAAAATATATTATTTAGACATATAATGGCGAGGGTGCGAAGGAGGGAGTACCTCTCCTTCCTTCGCTGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACCCGGTAGTAGTATTTACCGATTGGATGTTAATAATTCTTTCCCAAGTATGTAAATATGCGCTAACTCTCTCACTTTCTCTCAATTTCTCAATCACTTTCGCACATACGCAATGCCGTCGTTTGATGCTACTTCTTTGCGCGATTGTGCGCGCAAAAACTGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTATGTTGCCGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCTCTAGAGCTCTAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGCAGGCGAAGGCGCGACCATGCGTC ] [+] EMBL BM577794 [ CCGCAGCAACTGCTGCTATTACTACTTCTTTTACTATATCTACTACTACTACTACTATTACTACTACTACTACTTACATCATTGTGATTAGTTTCGCGCATACCGTCCGCTGTTGTTTGCGTGCGGGAGTGCTGGAACGTTGTAAAATATATTATTTAGACATATAATGGCGAGGGTGCGAAGGAGGGAGTACCTCTCCTTCCTTCGCTGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACCCGGTAGTAGTATTTACCGATTGGATGTTAATAATTCTTTCCCAAGTATGTAAATATGCGCTAACTCTCTCACTTTCTCTCAATTTCTCAATCACTTTCGCACATACGCAATGCCGTCGTTTGATGCTACTTCTTTGCGCGATTGTGCGCGCAAAAACTGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTATGTTGCCGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCTCTAGAGCTCTAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGCAGGCGAAGGCGCGACCATGCGTCCATACTAAGAAAAAAAAAACAAAGTGCTTTAAAAACTGTGGAAACCT ] [+] EMBL BX613938 [ TTCTTTTACTATATCTACTACTACTACTACTATTACTACTACTACTACTTACATCATTGTGATTAGTTTCGCGCATACCGTCCGCTGTTGTTTGCGTGCGGGAGTGCTGGAACGTTGTAAAATATATTATTTAGACATATAATGGCGAGGGTGCGAAGGAGGGAGTACCTCTCCTTCCTTCGCTGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGA ] [-] EMBL BX618933 [ GAAGGCGCGACCATGCGTCCATACTAAGAAAAAAAAAACAAAGTGCTTTAAAAACTGT GAAACCTCGGTGTAACCTTGAGATGATTTAGGGAGAAAAAGAAAACATAGAACGACAACAAAAAACATAAGATACACATACACACACGCAAACAATTGTATGTTTTTAATGATATCAATAAAGCAAAAACCACA] consensusID : consensus_6695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [CCGCGGACGCGTGGGGAGGGTGCGAAGGAGGGAGGAGAAGAGTACCTCTCCTTCCGCCGCTGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACGGTAGTAGTATTTACCGATTGGATGTTAATAATTCCTTCCCGAGTATGTAAATATGCGCTAACTCTTTCTCTCTCTCTCTTTCTCAATCACTTTCGCATACGCAATGCCGCAATGTCGTTTGATGCTACTTCTTTGCGCGATTGTGCGCGCAAACCGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTGTATGTTGCTGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCCTAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGAGGGCGAAGGCGCAACCATGCGTCCATACTAAGAAGAAGAAAAAAACAAAGTGCTTTAAAAACTGTGAAACCTCGGTG] [+] EMBL BM619350 [CCGCGGACGCGTGGGGAGGGTGCGAAGGAGGGAGGAGAAGAGTACCTCTCCTTCCGCCGCTGTGGCCCTCCGGTACCGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACGGTAGTAGTATTTACCGATTGGATGTTAATAATTCCTTCCCGAGTATGTAAATATGCGCTAACTCTTTCTCTCTCTCTCTTTCTCAATCACTTTCGCATACGCAATGCCGCAATGTCGTTTGATGCTACTTCTTTGCGCGATTGTGCGCGCAAACCGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTGTATGTTGCTGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCCTAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGAGGGCGAAGGCGCAACCATGCGTCCATACTAAGAAGAAGAAAAAAACAAAGTGCTTTAAAAACTGTGAAACCTCGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6695#0 CCGACCAATCGTACCACAGCAACTGCTGCTATTACTACTTCTTTTACTATATCTACTACT 60 consensus_6695#1 ------------------------------------------------------------ consensus_6695#0 ACTACTACTATTACTACTACTACTACTTACATCATTGTGATTAGTTTCGCGCATACCGTC 120 consensus_6695#1 ------------------------------------------------------------ consensus_6695#0 CGCTGTTGTTTGCGTGCGGGAGTGCTGGAACGTTGTAAAATATATTATTTAGACATATAA 180 consensus_6695#1 --------------------------------------------CCGCGGACGCGTGGGG 16 * * * consensus_6695#0 TGG---CGAGGGTGCGAAGGAGGGAGTACCTCTCCTTCCTTCGCTGTGGCCCTCCGGTAC 237 consensus_6695#1 AGGGTGCGAAGGAGGGAGGAGAAGAGTACCTCTCCTTCCGCCGCTGTGGCCCTCCGGTAC 76 ** *** ** * ** * **************** ******************* consensus_6695#0 CGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTACCCGGTAGTAGTATTTACCGATTGG 297 consensus_6695#1 CGTCAAAGTATCTAGCTAGGCGATAGAACCCGGTAC--GGTAGTAGTATTTACCGATTGG 134 ************************************ ********************** consensus_6695#0 ATGTTAATAATTCTTTCCCAAGTATGTAAATATGCGCTAACTCTCTCACTTTCTCTCAAT 357 consensus_6695#1 ATGTTAATAATTCCTTCCCGAGTATGTAAATATGCGCTAACTCTTTCTCTCTCTCTC--T 192 ************* ***** ************************ ** ** ****** * consensus_6695#0 TTCTCAATCACTTTCGCACATACGCAATGCCG-----TCGTTTGATGCTACTTCTTTGCG 412 consensus_6695#1 TTCTCAATCACTTTCGCA--TACGCAATGCCGCAATGTCGTTTGATGCTACTTCTTTGCG 250 ****************** ************ *********************** consensus_6695#0 CGATTGTGCGCGCAAAAACTGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGT-- 470 consensus_6695#1 CGATTGTGCGCGCAAA--CCGCTAAGCAATGGATACATTTGACCGTGTGGGACCGTGTGT 308 **************** * ************************************** consensus_6695#0 ATGTTGCCGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGCTCTAGAGCTC 530 consensus_6695#1 ATGTTGCTGTTGTATCATGTAAACCGTTTAAACCTCTTACAAGCTGTAGC---------C 359 ******* ****************************************** * consensus_6695#0 TAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGCAGGCGAAGGCGCGACCATGCG 590 consensus_6695#1 TAGAGCAGTGCAGGGCTGTGGTGGAATTTGAATAGTAGAGGGCGAAGGCGCAACCATGCG 419 ************************************** *********** ******** consensus_6695#0 TCCATACTAAGAAAAA---AAAAACAAAGTGCTTTAAAAACTGTGGAAACCTCGGTGTAA 647 consensus_6695#1 TCCATACTAAGAAGAAGAAAAAAACAAAGTGCTTTAAAAACTGTG-AAACCTCGGTG--- 475 ************* ** ************************** *********** consensus_6695#0 CCTTGAGATGATTTAGGGAGAAAAAGAAAACATAGAACGACAACAAAAAACATAAGATAC 707 consensus_6695#1 ------------------------------------------------------------ consensus_6695#0 ACATACACACACGCAAACAATTGTATGTTTTTAATGATATCAATAAAGCAAAAACCACA 766 consensus_6695#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||