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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 850 fasta sequence
[CCCCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTAAGCTTACAAAAAATCACACACAAATCGCTTTTATTTACATCTCAAAATCATCCCTCATATCGTTATACTCCATCAGATGCTTCTGGATGGCGGAACCGTCCACCCA-GGTGATGAAGTCCT-CCAGCGTGCGCGGCACCAAGAACGCCGGATCC-TTCA-CCACC-TCCACCCCAA-CCCGCACGTGCCCGTGCTCCACCATCTTCGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGCGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGATCGATGTCCGCGATCTTGCGCGCCAGCTCGCGCACGCTCCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCTGGGTTATGTCAGGTGCGGTGGGTAGCAGAACTGTTCTCAGTTTGTTTAAATGGGTTTAGGTTCGTGTTAATTCCG-TTTTTCTGCACTTTTTGCTGTGTTTTCCGGAATTTGCAGCACAGCACCGATTGGGGGGGAAGGTACCAACAGCGAGCGTAAACAAACGCATCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTAAAAAGAGG]
[-] EMBL CNS097AK [CCCCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTAAGCTTACAAAAAATCACACACAAATCGCTTTTATTTACATCTCAAAATCATCCCTCATATCGTTATACTCCATCAGATGCTTCTGGATGGCGGAACCGTCCACCCA GGTGATGAAGTCCTCCCAGCGTGCGCGGCACCAAGAACGCCGGATCC TTCA CCACC TCCACCCCAAGCGCG ACGTGCCCGTGCTCCACCATCTTCGTTGCGTGCGACACATTTTCCGACATCTTG TGCGCACCAGCACGAGCGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGATCGATGTCCGCGATCTTGCGCGCCAGCTCGCGCACGCTCCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAG TTGCGCACCATGCTGGCGGCTGGGGCTGGGTTATGTCAGGTGCGGTGGGTAGCAGAACTGTTCTCAGTTTGTTTAAATGGGTTTAGGTTCGTGTTAATTCCG TTTTTCTGCACTTTTTGCTGTGTTTTCCGGAATTTGCAGCACAGCACCGATTGGGGGGGAAGGT ]
[+] EMBL CNS097AL [ CAAATCGCTTTTATTTACATCTCAAAATCATCCCTCATATCGTTATACTCCATCAGATGCTTCTGGATGGCGGAACCGTCCACCCA GGTGATGAAGTCCT CCAGCGTGCGCGGCACCAAGAACGCCGGATCC TTCA CCACC TCCACCCCAA CCCGCACGTGCCCGTTCTCCACCATCTTCGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGCGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGAACCCACTTGGTCGGTATCACGCCCATAACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAAC GGTGCTTCGGATCGATGTCCGCGATCTTGCGCGCCA CCCGCGCACGCTCCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGAAGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCTGGGTTATGTCAGGTGCGGTGGGTAGCAGAACTGTTCTCAGTTTGTTTAAATGGGTTTAGGTTCGTGTTAATTCCG TTTTTCTGCACTTTTTGCTGTTTTTTCCGGAATTTGCAGCACAGCACCGATTGGGGGGGAAGGTACCAACAGCGAGCGTAAACAAACGCATCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTAAAAAGAGG]
[-] EMBL BM588269 [ ATCGTTATACTCCATCAGATGCTTCTGGATGGCGGAACCGTCCACTCAGGGTGATGAAGTCCT CCAGCGTGCGCGGCACCAAGAACGCCGGATCCTTTCACCCACCTTCCACCCCCA ACCGCACGTGCCCATGCTCCACCATCTTCGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGCGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGATCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTTGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGGGTAGCAGAACTGTTCCCAGTTTGTTTAAATGGGTTTAGGTTTGTGTTAATTCCGTTTTTTCTGCACTTTTTGCTGTGTTTTCCGGAATTCGCAGCACAGCACCGATTGGGGGGGGAGagcgg ]
[-] EMBL BM634452 [ CGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGCGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGATCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTTGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGGGTAGCAGAACTGTTCCCAGTTTGTTTAAATGGGTTTAGGTTTGTGTTAATTCCGTTTTTTCTGCACTTTTTGCTGTGTTTTCCGGAATTCGCAGCACAGCACCGATTGGGCGG ]
consensusID : consensus_6698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence
[CCGTGCTCCACCATCTTCGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGTGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGGTCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGAGTAGCAGAACTGTTCCCAGTTGGTTTAAATGGGTTTAGGTTCGTGTTAATTCCGATTCTTCTGCACTTTTAGCTGTTTTCCGGAATTTGCAGCACAGCACCGATTGGGGCGGACGCGTGGGTCG]
[-] EMBL BM621769 [CCGTGCTCCACCATCTTCGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGTGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGGTCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGAGTAGCAGAACTGTTCCCAGTTGGTTTAAATGGGTTTAGGTTCGTGTTAATTCCGATTCTTCTGCACTTTTAGCTGTTTTCCGGAATTTGCAGCACAGCACCGATTGGGGCGGACGCGTGGGTCG]
consensusID : consensus_6698#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence
[GCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGTGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGGTCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGAGTAGCAGAACTGTTCCCAGTTGGTTTAAATGGGTTTAGGTTCGTGTTAATTCCGATTCTTCTGCACTTTTAGCTGTGTTTTCCGGAATTTGCAGCACAGCACCCCACGCGTCCGCGG]
[-] EMBL BM646538 [GCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGTGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGGTCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGAGTAGCAGAACTGTTCCCAGTTGGTTTAAATGGGTTTAGGTTCGTGTTAATTCCGATTCTTCTGCACTTTTAGCTGTGTTTTCCGGAATTTGCAGCACAGCACCCCACGCGTCCGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6698#1 ------------------------------------------------------------
consensus_6698#2 ------------------------------------------------------------
consensus_6698#0 CCCCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTAAGCTTACAAAAAATCACAC 60
consensus_6698#1 ------------------------------------------------------------
consensus_6698#2 ------------------------------------------------------------
consensus_6698#0 ACAAATCGCTTTTATTTACATCTCAAAATCATCCCTCATATCGTTATACTCCATCAGATG 120
consensus_6698#1 ------------------------------------------------------------
consensus_6698#2 ------------------------------------------------------------
consensus_6698#0 CTTCTGGATGGCGGAACCGTCCACCCAGGTGATGAAGTCCTCCAGCGTGCGCGGCACCAA 180
consensus_6698#1 -------------------------------------------CCGTGCTCCACCATCTT 17
consensus_6698#2 ------------------------------------------------------------
consensus_6698#0 GAACGCCGGATCCTTCACCACCTCCACCCCAACCCGCACGTGCCCGTGCTCCACCATCTT 240
consensus_6698#1 CGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGTGGCAACCGCCG 77
consensus_6698#2 --------GCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGTGGCAACCGCCG 52
consensus_6698#0 CGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGCGGCAACCGCCG 300
**************************************** ***********
consensus_6698#1 CCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTAT 137
consensus_6698#2 CCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTAT 112
consensus_6698#0 CCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTAT 360
************************************************************
consensus_6698#1 CACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTG 197
consensus_6698#2 CACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTG 172
consensus_6698#0 CACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTG 420
************************************************************
consensus_6698#1 CTTCGGGTCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTT 257
consensus_6698#2 CTTCGGGTCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTT 232
consensus_6698#0 CTTCGGATCGATGTCCGCGATCTTGCGCGCCAGCTCGCGCACGCTCCGGGCCATCTTGTT 480
****** ******************************** ***** **************
consensus_6698#1 GTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTG 317
consensus_6698#2 GTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTG 292
consensus_6698#0 GTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTG 540
************************************************************
consensus_6698#1 CAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTG 377
consensus_6698#2 CAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTG 352
consensus_6698#0 CAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTG 600
************************************************************
consensus_6698#1 GAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGAGT 437
consensus_6698#2 GAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGAGT 412
consensus_6698#0 GAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCTGGGTTATGTCAGGTGCGGTGGGT 660
************************************ ******************** **
consensus_6698#1 AGCAGAACTGTTCCCAGTTGGTTTAAATGGGTTTAGGTTCGTGTTAATTCCGATTCTTCT 497
consensus_6698#2 AGCAGAACTGTTCCCAGTTGGTTTAAATGGGTTTAGGTTCGTGTTAATTCCGATTCTTCT 472
consensus_6698#0 AGCAGAACTGTTCTCAGTTTGTTTAAATGGGTTTAGGTTCGTGTTAATTCCG-TTTTTCT 719
************* ***** ******************************** ** ****
consensus_6698#1 GCACTTTTAGCTG--TTTTCCGGAATTTGCAGCACAGCACCGATTGGGGCGGACGCGTGG 555
consensus_6698#2 GCACTTTTAGCTGTGTTTTCCGGAATTTGCAGCACAGCACCCCACGCGTCCGCGG----- 527
consensus_6698#0 GCACTTTTTGCTGTGTTTTCCGGAATTTGCAGCACAGCACCGATTGGGGGGGAAGGTACC 779
******** **** ************************** * * * *
consensus_6698#1 GTCG-------------------------------------------------------- 559
consensus_6698#2 ------------------------------------------------------------
consensus_6698#0 AACAGCGAGCGTAAACAAACGCATCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCAGCT 839
consensus_6698#1 -----------
consensus_6698#2 -----------
consensus_6698#0 TTAAAAAGAGG 850
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||