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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence
[CTGGGACGCAGAAGTGCACGCTCCGTGAAATTGCTGCTCAGCTGCTGTAGCTGGTGTGCTTGTTGTGTGATTAGAACAGTTCCGTCACCGTACCGACGAGTGGGGCCCCCGACTGCTTTTAGTGCAACCGTGACGTGATTTCGTAACCAGTCTGACCAGCTGTGACCAGTGAAAGCGATACATCCAAAATTCACTGCCTGCAAGCATGCTGCGTGTCCCAACCTGGTTCTATATATTGGCCTGTGGACATTCCTGTGGGTGGTTTGCTTGGGTCTCCGCGGGGTNGGGGCATATGCCCTTTGGGCCACAGGNATCTATTGGTTCCCGGTGTTTCCTGGTGTACACGTGCCGGCGGGCAGGTAATTAGGACTATTATCAACCTTTGCACNCCGGTTCCGGGCTTNGGCCCCACTTCCCATTCATTATTCNTNTNTGGTTGGCGGTTGCTTGGCTCTGCGCGTTTCTCGGTCTCCCCAGGTTGGCGCTTGGGNACGTTTGCCCTGGGCCTTTACACGGCTGGTCACCCCGTGGGTGNAGATATTACCGGGGAAAACAGGTGGGCATGGTAGTCGTAGGCAAAGGGCTTAGTCCGTGNACCACAACCAGNTTTTGCCTTTGGTTTTNGCNTTNTTANAAGCGCNTTTGGCTATTGGCTTACNACNCAGGGNNCTANAGCCCGGCCNAGTNCATAGGATTTTGATTTGACCGCGCCCCANGCGTCANGTNCACAACAAANCACAGAGTAAANCANTACGGTCGCAGGGAGCCTTGTNGACCTCCTGCAAAACACANN]
[+] EMBL AL693847 [CTGGGACGCAGAAGTGCACGCTCCGTGAAATTGCTGCTCAGCTGCTGTAGCTGGTGTGCTTGTTGTGTGATTAGAACAGTTCCGTCACCGTACCGACGAGTGGGGCCCCCGACTGCTTTTAGTGCAACCGTGACGTGATTTCGTAACCAGTCTGACCAGCTGTGACCAGTGAAAGCGATACATCCAAAATTCACTGCCTGCAAGCATGCTGCGTGTCCCAACCTGGTTCTATATATTGGCCTGTGGACATTCCTGTGGGTGGTTTGCTTGGGTCTCCGCGGGGTNGGGGCATATGCCCTTTGGGCCACAGGNATCTATTGGTTCCCGGTGTTTCCTGGTGTACACGTGCCGGCGGGCAGGTAATTAGGACTATTATCAACCTTTGCACNCCGGTTCCGGGCTTNGGCCCCACTTCCCATTCATTATTCNTNTNTGGTTGGCGGTTGCTTGGCTCTGCGCGTTTCTCGGTCTCCCCAGGTTGGCGCTTGGGNACGTTTGCCCTGGGCCTTTACACGGCTGGTCACCCCGTGGGTGNAGATATTACCGGGGAAAACAGGTGGGCATGGTAGTCGTAGGCAAAGGGCTTAGTCCGTGNACCACAACCAGNTTTTGCCTTTGGTTTTNGCNTTNTTANAAGCGCNTTTGGCTATTGGCTTACNACNCAGGGNNCTANAGCCCGGCCNAGTNCATAGGATTTTGATTTGACCGCGCCCCANGCGTCANGTNCACAACAAANCACAGAGTAAANCANTACGGTCGCAGGGAGCCTTGTNGACCTCCTGCAAAACACANN]
consensusID : consensus_6703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 638 fasta sequence
[CCG-CGAACATTCTGGGACGCAGAAGTGCACGCTCCGTGAAATCGCTGCTCAGCTGCTGTAGCTGGTGGCTTGTTGTGTGATTAGAACAGTTCCGTCACCGTACCGACGAGGGGGCCCCCGACGCTTTTAGTGCAGCCGTGACGTGATTTCGTAACCAGTCGCACCAGCGGACAGGAAGCATCATCAAATTCACGCCGCAGCAGCGCGCCACCGTTTTTTGCCGGCACATCCGTGGTGGTGCTGGTCGGGTGGTGGGATTGCCTTGGGCACAGTTCTTGTCCGTGTTCTGGGAAGGCGCGGAGTATTGATTTTTCTTGCCCGTTCGCTGCCCATCAATATATA-TTGTGCGTGTGTTGCCTTTCGTTC-AGTGCTGGAGTGCCGCTGCGGCAC-GGATACGGAAGGCGGGG-AGTTTGAAAGTGTGTGTGTGTGTG-AGTGTGTTTGGTGCGTGTGTGTGCGCAGGAGAAACAGTAGGCGGTGTCGACGGCGGTGCCTTTCCGC-GGCTTGGTGATCCTGCGCTCCTGTTGCTGTACATCCGCCCAAAATGTACAACGGCATCGGGCTGACCACAC-CGCGCGGTT-CCGGCACGAACGGCCACGT-CCAGCGTAACGTGGCATTCGTCCGGCCGGGCAAGAAGGACA]
[+] EMBL BM607970 [CCG CGAACATTCTGGGACGCAGAAGTGCACGCTCCGTGAAATCGCTGCTCAGCTGCTGTAGCTGGTGGCTTGTTGTGTGATTAGAACAGTTCCGTCACCGTACCGACGAGGGGGCCCCCGACGCTTTTAGTGCAGCCGTGACGTGATTTCGTAACCAGTCGCACCAGCGGACAGGAAGCATCATCAAATTCACGCCGCAGCAGCGCGCCACCGTTTTTTGCCGGCACATCCGTGGTGGTGCTGGTCGGGTGGTGGGATTGCCTTGGGCACAGTTCTTGTCCGTGTTCTGGGAAGGCGCGGAGTATTGATTTTTCTTGCCCGTTCGCTGCCCATCAATATATA TTGTGCGTGTGTTGCCTTTCGTTC AGTGCTGGAGTGCCGCTGCGGCAC GGATACGGAAGGCGGGG AGTTTGAAAGTGTGTGTGTGTGTG AGTGTGTTTGGTGCGTGTGTGTGCGCAGGAGAAACAGTAGGCGGTGTCGACGGCGGTGCCTTTCCGC GGCTTGGTGATCCTGCGCTCCTGTTGCTGTACATCCGCCCAAAATGTACAACGGCATCGGGCTGACCACAC CGCGCGGTT CCGGCACGAACGGCCACGT CCAGCGTAACGTGGCATTCGTCCGGCCGGGCAAGAAGGACA]
[+] EMBL BM600898 [CCGCCGAACATTCTGGGACGCAGAAGTGCACGCTCCGTGAAATCGCTGCTCAGCTGCTGTAGCTGGTGGCTTGTTGTGTGATTAGAACAGTTCCGTCACCGTACCGACGAGGGGGCCCCCGACGCTTTTAGTGCAGCCGTGACGTGATTTCGTAACCAGTCGCACCAGCGGACAGGAAGCATCATCAAATTCACGCCGCAGCAGCGCGCCACCGTTTTTTGCCGGCACATCCGTGGTGGTGCTGGTCGGGTGGTGGGATTGCCTTGGGCACAGTTCTTGTCCGTGTTCTGGGAAGGCGCGGAGTATTGATTTTTCTTGCCCGTTCGCTGCCCATCAATATATATTTGTGCGTGTGTTGCCTTTCGTTC AGTGCTGGAGTGCCGCTGCGGCACGGGATACGGAAGGCGGGG AGTTTGAAAGTGTGTGTGTGTGTGAAGTGTGTTTGGTGCGTGTGTGTGCGCAGGAGAAACAGTAGGCGGTGTCGACGGCGGTGCCTTTCCGC GGCTTGGTGATCCTGCGCTCCTGTTGCTGTACATCCGCCCAAAATGTACAACGGCATCGGGCTGACCACACGCGCGCGGTTCCCGGCACGAACGGCCACGTCCCAGCGTAACGTGGC ]
[+] EMBL BM657416 [ ccgATTCTGGGACGCAGAAGTGCACGCTCCGTGAAATCGCTGCTCAGCTGCTGTAGCTGGTGGCTTGTTGTGTGATTAGAACAGTTCCGTCACCGTACCGACGAGGGGGCCCCCGACGCTTTTAGTGCAGCCGTGACGTGATTTCGTAACCAGTCGCACCAGCGGACAGGAAGCATCATCAAATTCACGCCGCAGCAGCGCGCCACCGTTTTTTGCCGGCACATCCGTGGTGGTGCTGGTCGGGTGGTGGGATTGCCTTGGGCACAGTTCTTGTCCGTGTTCTGGGAAGGCGCGGAGTATTGATTTTTCTTGCCCGTTCGCTGCCCATCAATATATA TTGTGCGTGTGTTGCCTTTCGTTC AGTGCTGGAGTGCCGCTGCGGCAC GGATACGGAAGGCGGGG AGTTTGAAAGTGTGTGTGTGTGTG AGTGTGTTTGGTGCGTGTGTGTGCGCAGGAGAAACAGTAGGCGGTGTCGACGGCGGTGCCTTTCCGC GGCTTGGTGATCCTGCGCTCCTGTTGCTGTACATCCGCCCAAAATGTACAACGGCATCGGGCTGACCACAC CGCGCGGTT CCGGCACGAACGGCCACGT CCAGCGTAACGTGGCATTCGTCCGGCCGGG ]
[+] EMBL BM600067 [ cCGCAGAAGTGCACGCTCCGTGAAATCGCTGCTCAGCTGCTGTAGCTGGTGGCTTGTTGTGTGATTAGAACAGTTCCGTCACCGTACCGACGAGGGGGCCCCCGACGCTTTTAGTGCAACCGTGACGTGATTTCGTAACCAGTCGCACCAGCGGACAGGAAGCATCATCAAATTCACGCCGCAGCAGCGCGCCACCGTTTTTTGCCGGCACATCCGTGGTGGTGCTGGTCGGGTGGTGGGATTGCCTTGGGCACAGTTCTTGTCCGTGTTCTGGGAAGGCGCGGAGTATTGATTTTTCTTGCCCGTTCGCTGCCCATCAATATATA TTGTGCGTGTGTTGCCTTTCGTTCAAGTGGTGGAGTGCCGCTGCGGCAC GGATACGGAAGGCGGGGCAGTTTGAAA GTGTGTGTG AGTGTGTTTTGTGCGTGTGTGTGCGCAGGAGAAACAGTAGGCGGTGTCGACGGCGGTGCCTTTCCGCGGGCTTGGTGATCCTGCGCTCCTGTTGCTG ]
[+] EMBL BM632084 [ ccgGTACCGACGAGGGGGCCCCCGACGCTTTTAGTGCAGCCGTGACGTGATTTCGTAACCAGTCGCACCAGCGGACAGGAAGCATCATCAAATTCACGCCGCAGCAGCGCGCCACCGTTTTTTGCCGGCACATCCGTGGTGGTGCTGGTCGGGTGGTGGGATTGCCTTGGGCACAGTTCTTGTCCGTGTTCTGGGAAGGCGCGGAGTATTGATTTTTCTTGCCCGTTCGCTGCCCATCAATATATA TTGTGCGTGTGTTGCCTTTCGATC AGTGGTGGAGTGTGGCGGCGGCAC GGATACGGAA AGTGTG AGTGTTTGTGTTTTT TGTGT GT GTGTGTGTGCG GAAGAAACAGTAGGCGGTGTCGACGGCGGTGCCTTTCCGC GCCTGGTGATCCTGCGCTCCTGTTGCCGTACATCCGCCCAAAATGTACAACGGCATCGGGCTGACCACAC CG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6703#0 -----------CTGGGACGCAGAAGTGCACGCTCCGTGAAATTGCTGCTCAGCTGCTGTA 49
consensus_6703#1 CCGCGAACATTCTGGGACGCAGAAGTGCACGCTCCGTGAAATCGCTGCTCAGCTGCTGTA 60
******************************* *****************
consensus_6703#0 GCTGGTGTGCTTGTTGTGTGATTAGAACAGTTCCGTCACCGTACCGACGAGTGGGGCCCC 109
consensus_6703#1 GCTGGTG-GCTTGTTGTGTGATTAGAACAGTTCCGTCACCGTACCGACGAG-GGGGCCCC 118
******* ******************************************* ********
consensus_6703#0 CGACTGCTTTTAGTGCAACCGTGACGTGATTTCGTAACCAGTCTGACCAGCTGTGACCAG 169
consensus_6703#1 CGAC-GCTTTTAGTGCAGCCGTGACGTGATTTCGTAACCAGTCGCACCAGCG--GACAGG 175
**** ************ ************************* ****** *** *
consensus_6703#0 TGAAAGCGATACATCCAAAATTCA-CTGCCTGCAAGCATGCTGCGT-GTCCCAACC-TGG 226
consensus_6703#1 AAGCATCATCAAATTCACGCCGCAGCAGCGCGCCACCGTTTTTTGCCGGCACATCCGTGG 235
* * * ** ** ** * ** ** * * * * * * * ** ** ***
consensus_6703#0 TTCTATATATTGGCCTGTGGACATTCCTGTGGGTGGTTTGCTTGGGTCTCCGCGGGGTNG 286
consensus_6703#1 TGGTGCTGGTCGGGTGGTGGG-ATTGCCTTGGGCACAGTTCTTG----TCCGTGTTCTGG 290
* * * ** **** *** * **** * **** **** * * *
consensus_6703#0 GGGCATATGCCCTTTGGGCCACAGGNATCTATTGGTT-CCCGGTGTTTCCTGGTGTACAC 345
consensus_6703#1 GAAGGCGCGGAGTATTGATTTTTCTTGCCCGTTCGCTGCCCATCAATATATATTGTGCGT 350
* * * * * * ** * * *** * * *** *
consensus_6703#0 GTGCCGGCGGGCAGGTAATTAGGACTATTATCAACCTTTGCACNCCGGTTCCGGGCTTNG 405
consensus_6703#1 GTGTTGCCTTTCGT----TCAGTGCTGGAGT--GCCGCTGCGGCACGGATACGGA---AG 401
*** * * * * ** ** * ** *** *** * *** *
consensus_6703#0 GCCCCACTTCCCATTCATTATTCNTNTNTGGTTGGCGGTTGCTTGGCTCTGCGCGTTTCT 465
consensus_6703#1 GCGGGGAGTTTGAAAGTGTGTGTGTGTGTGAGTG-----TGTTTGG---TGCGTGTGTGT 453
** * * * * * * ** ** ** **** **** ** * *
consensus_6703#0 CGGTCTCCCCAGGTTGGCGCTTGGGNACGTTTGCCCTGG-GCCTTTACACGGCT-GGTCA 523
consensus_6703#1 -----GCGCAGGAGAAACAGTAGGCGGTGTCGACGGCGGTGCCTTTCCGCGGCTTGGTGA 508
* * * * * ** ** * ** ****** * ***** *** *
consensus_6703#0 CCCCGTGGGTGNAGATATTACCGGGGAAAACAGGTGGGCATGGTAGTCGTAGGCAAAGGG 583
consensus_6703#1 TCCT----GCGCTCCTGTTGCTGT-----ACATCCGCCCAAAATGTACAACGGCATCGGG 559
** * * * ** * * *** * ** * * **** ***
consensus_6703#0 CTTAGTCCGTGNACCACAACCAGNTTTTGCCTTTGGTTTTNGCNTTNTTANAAGCGCNTT 643
consensus_6703#1 CTGA-------CCACACCGCGCGGTTCCGGCACGAACGGCCACGTCCAGCGTAACGTGGC 612
** * *** * * ** * * * * * **
consensus_6703#0 TGGCTATTGGCTTACNACNCAGGGNNCTANAGCCCGGCCNAGTNCATAGGATTTTGATTT 703
consensus_6703#1 ATTCGTCCGGCCGGGCAAGAAGGACA---------------------------------- 638
* *** * ***
consensus_6703#0 GACCGCGCCCCANGCGTCANGTNCACAACAAANCACAGAGTAAANCANTACGGTCGCAGG 763
consensus_6703#1 ------------------------------------------------------------
consensus_6703#0 GAGCCTTGTNGACCTCCTGCAAAACACANN 793
consensus_6703#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||