These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence [TGCAATCGTCGTTGGATTGTGGATTGTGTGCGTGTGTTTAGTAAGAGGCCAGTGTGGGATAGTAAGGGAAAAGTTGTTTTTTTTTTTTTTCACTTCTGCCGGGTGTGTGCGTGAGCAATGATAGTATATGTGATGTGTATCTCCCCTTTTTTTACAATGACTTTCTTCTTCGCATACAATTTAATTATCTTTTTTATAATATTTAGAATAACGAACCACCACAGAACACACACATACAAACGAATAACGAATTCATTGGCGGGAAGAAGTAACAGTACGAGGCACACTTTCACCCTCAGAAATGCACTTGCGATAATTGTGTAGCATCCTGATTGGACAAAATTTGGATTTAAGGAAGGACTCATTTTATTGTGCGCAACAAAAATAGATACACATTTCTGAACGGGATTGCAGAGGAATCAGTACTAGGTAGAGGAGGGAAGCATAATCTGCTTCGGGGCGTGCGTATAGCGATTGTGTAAGAAAGCAAACAACCACTTAAATTAAGACAAGATTAGCGAGTAACATACGGTACCGTAACGTTAGGATTGGGCTGCGCTCCCAGGGGCGTCAGCAAATTACCTGTGTAAGCATATAAATTATCGACTAAAAACACTGGCAAACCGGGCTTCTAAAACACGGTTCAAATA] [+] EMBL BX624200 [TGCAATCGTCGTTGGATTGTGGATTGTGTGCGTGTGTTTAGTAAGAGGCCAGTGTGGGATAGTAAGGGAAAAGTTGTTTTTTTTTTTTTTCACTTCTGCCGGGTGTGTGCGTGAGCAATGATAGTATATGTGATGTGTATCTCCCCTTTTTTTACAATGACTTTCTTCTTCGCATACAATTTAATTATCTTTTTTATAATATTTAGAATAACGAACCACCACAGAACACACACATACAAACGAATAACGAATTCATTGGCGGGAAGAAGTAACAGTACGAGGCACACTTTCACCCTCAGAAATGCACTTGCGATAATTGTGTAGCATCCTGATTGGACAAAATTTGGATTTAAGGAAGGACTCATTTTATTGTGCGCAACAAAAATAGATACACATTTCTGAACGGGATTGCAGAGGAATCAGTACTAGGTAGAGGAGGGAAGCATAATCTGCTTCGGGGCGTGCGTATAGCGATTGTGTAAGAAAGCAAACAACCACTTAAATTAAGACAAGATTAGCGAGTAACATACGGTACCGTAACGTTAGGATTGGGCTGCGCTCCCAGGGGCGTCAGCAAATTACCTGTGTAAGCATATAAATTATCGACTAAAAACACTGGCAAACCGGGCTTCTAAAACACGGTTCAAATA] [+] EMBL BM579975 [ ccgGTGTGTGTGTTTAGTAAGAGGCCAGTGTGGGATAGTAAGGGAAAAGTTGTTTTTTTTTT ACTTCTGCCGGGTGTGTGCGTGAGCAATGATAGAATATGTGATGTGTACCTCCCC TTTTTTACAATGACTTTCTTCTTCGCATACAATTTAATTCTCTTTTTTATAATATTTAGAATAACGAACCACCACAGAACACACACATACAAACGAATAACGAATTCATTGGCGGG AGAAGTAACAGTACGAGGCACACTTTCACCCTCAGAAATGCACTTGCGATAATTGTGTAGCATCCCTATTGGACAAAATTTGAATTTAAGGAAGGACTCATTTTATTGTGCGCAACAAATATAGATACACATTTCTGAACGGGATTGCAGAGGAATCAGTACTAGGTAGAGGAGGGAAGCATAATCTGCTTCAGGGCGTGCGTATATCGATTGTGTAAGAAAGCAAGCAACCACTTAAATTAAGACAAGATTAGCGAGTAACATAAGGTACCGTAACTTTAGGATTGGGCTGCGCTCTCATGGGCGTCAGCAAATTACCTGTGTAAGCATATAAATTATCGACTAAAAACACTGGCAAACCGGGCT ] consensusID : consensus_6706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 617 fasta sequence [GCGAAGGGCTCAGCCGGCAGCACGTGCTGACGCGCATCGGCGTGATGTCGCTGATCCGCAAGAAGGTGCAGGAGTTTGAGCACATCAACGGGTACTACAGCATGCCGGAGCTGATCAAGCGCCCGTGTGAGCCGGTCAAGATTGCCGTCGCCGCTCCGGCTGCTGTTGGGGCGGCGCCAGGTGGTGAGGGTACGTCCGGGACGGCCGGTGCTGCTGCTCCAGCCAGTGGAGAAACGTCCAAATCGGCCACGACGAGCACGAGTGCAACGCCGGCGACCAGTGCTGCGCCCAGCCCGGCCCCGAACGCCAGTGCGTCCGGCGATAAGGAGGAGGAACAACAGTCGGGTGAAAAGGCGACCGATGGCGGTGACAAAGAAAAGCCAACGGACAGTGGTAATGGCACAACACCGGCCGAGGAGGGCGAAAAAGCGAGAAAAGATGAGGAAGAGAAGGAGAGAATGGGGAAAGCGAAGGAGCGAAGAAAAAGAGAAAGAAAACAGCACGATAAGACGGGTCTTTAGTTGTCGTTGCCTTCCGCAGCCGATTTTCCGTTTGAAATCATTTCCACCGCAACAACAACGGGCCAGCGGCTGCCGGCAGCCAGTCGCACGGACCGG] [+] EMBL BX623460 [GCGAAGGGCTCAGCCGGCAGCACGTGCTGACGCGCATCGGCGTGATGTCGCTGATCCGCAAGAAGGTGCAGGAGTTTGAGCACATCAACGGGTACTACAGCATGCCGGAGCTGATCAAGCGCCCGTGTGAGCCGGTCAAGATTGCCGTCGCCGCTCCGGCTGCTGTTGGGGCGGCGCCAGGTGGTGAGGGTACGTCCGGGACGGCCGGTGCTGCTGCTCCAGCCAGTGGAGAAACGTCCAAATCGGCCACGACGAGCACGAGTGCAACGCCGGCGACCAGTGCTGCGCCCAGCCCGGCCCCGAACGCCAGTGCGTCCGGCGATAAGGAGGAGGAACAACAGTCGGGTGAAAAGGCGACCGATGGCGGTGACAAAGAAAAGCCAACGGACAGTGGTAATGGCACAACACCGGCCGAGGAGGGCGAAAAAG ] [-] EMBL BM623053 [ CGGAGCTGATCAAGCGCCCGTGTGAGCCGGTCAAGATTGCCGTCGCCGTTCCGGCTGCTGTTGGGGCGGCGCCAGGTGGTGAGGGTACGTCCGGGACGGCCGGTGCACCTGCTCCAGCCAGTGGAGAAACGTCCAAATCGGCCACGACGAGCACGAGTGCAACGCCGGCGACCAGTGCTGCACCCAGCCCGGCCCCGAACGCCAGTGCGTCCGGCGATAAGGAGGAGGAACAACAGTCGGGTGAAAAGGCGACCGATGGCGGTGACAAAGAAAAGCCAACGGATGGCGGTAGTGGCACGACGCCGGCCGAGGAGGGCGAAAAAACGAGAAAAGATGAGGAAGAGAAGGAGAGAATGGGGAAAGCGAAGGAGCGAAGAAAAAGAGAAAGAAAACAGCACGATAAGACGGGTCTTTAGTTGTCGTTGCCTTCCGCAGCCGATTTTCCGTTTGAAATCATTTCCACCGCAACAACAACGGGCCAGCGGCTGCCGGCAGCCAGTCGCACGGACCGG] consensusID : consensus_6706#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [CCGGAAGTGAAGAAGGAAGTGAAAAAAAAAAGCCAACGGACAGTGGTAATGGCACAACACCGGCCGAGGAGGGCGAAAAAGCGGCTGAAGTGAAGAAGGAAGTGAAAGAGGAAGGGGCGGACGATGCGACCGACAAGAAGTCGGCGGGCGACAACAAGAAGGATGAAAGCAGCGGCGAGGTCTCAGCGAAGGATGAACCGATGGACACCGACGGGGAGAAGAAGGACGACAAGCAACCGTCCGGTGAGGAGGCGATCGATCTGAAGAGTGTCAAGACCGAGGAGGATGCGGGTGCGGTAGCGCCGAAGAAGGAAGCTGGCGACGAGAAGGAAAAGTCCGAGGAGAAGAAGCCAGCGGACGGAGCGGCGAAGAGCAGCGCGGAAGAGGCGAAGAAAGCACCGGTGGAAGCCAAGAAGGAGGCCGAGGAAGAGGACGATGACGATGAGGTGAAGTTCGTGGAGGATGGCAGCACGCTGCCGCCGGTGGTGAAGAAACAGGAGCCGGAAACGAAGCCGGCGCCGGCCCCAGCACCAGCCACCACGACCACCACCACCACCACGATCGAT] [+] EMBL BM582140 [CCGGAAGTGAAGAAGGAAGTGAAAAAAAAAAGCCAACGGACAGTGGTAATGGCACAACACCGGCCGAGGAGGGCGAAAAAGCGGCTGAAGTGAAGAAGGAAGTGAAAGAGGAAGGGGCGGACGATGCGACCGACAAGAAGTCGGCGGGCGACAACAAGAAGGATGAAAGCAGCGGCGAGGTCTCAGCGAAGGATGAACCGATGGACACCGACGGGGAGAAGAAGGACGACAAGCAACCGTCCGGTGAGGAGGCGATCGATCTGAAGAGTGTCAAGACCGAGGAGGATGCGGGTGCGGTAGCGCCGAAGAAGGAAGCTGGCGACGAGAAGGAAAAGTCCGAGGAGAAGAAGCCAGCGGACGGAGCGGCGAAGAGCAGCGCGGAAGAGGCGAAGAAAGCACCGGTGGAAGCCAAGAAGGAGGCCGAGGAAGAGGACGATGACGATGAGGTGAAGTTCGTGGAGGATGGCAGCACGCTGCCGCCGGTGGTGAAGAAACAGGAGCCGGAAACGAAGCCGGCGCCGGCCCCAGCACCAGCCACCACGACCACCACCACCACCACGATCGAT] consensusID : consensus_6706#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [TCGATCTGAAGAGTGTCAAGACCGAGGAGGATGCGGTAGCGCCGAAGAAGGAAGCTGGCGACGAGAAGGAAAAGTCCGAGGAGAAGAAGCCAGCGGACGGAGCGGCGAAGAGCAGCGCGGAAGAGGCGAAGAAAGCACCGGTGGAAGCCAAGAAGGAGGCCGAGGAAGAGGACGATGACGATGAGGTGAAGTTCGTGGAGGATGGCAGCACGCTGCCGCCGGTGGTGAAGAAACAGGAGCCGGAAACGAAGCCGGCCAGCCGACCAACTTCCCCAGCGGCGCCGGTGCGGCCGGTTCCAGCTCGTCCGGCAAGTAAAGGCGCTCTTCTTCGATTTGCCTGCATAACTGATATGATGCTGCTTCCCCTTGCTGCATCTATCAAGGGGCCACTGAAATCGCTATCAATTAGCTCTGGTGCAATCGTCGTTGGATTGTGTGTGTGTTTAGTAAGAGGCCAGTGTGGGATAGTAAGGGAAAAGTTGTTTTTTTTTACTTCTGCCGGGTGTGTGCGTGA] [+] EMBL BX618589 [TCGATCTGAAGAGTGTCAAGACCGAGGAGGATGCGGTAGCGCCGAAGAAGGAAGCTGGCGACGAGAAGGAAAAGTCCGAGGAGAAGAAGCCAGCGGACGGAGCGGCGAAGAGCAGCGCGGAAGAGGCGAAGAAAGCACCGGTGGAAGCCAAGAAGGAGGCCGAGGAAGAGGACGATGACGATGAGGTGAAGTTCGTGGAGGATGGCAGCACGCTGCCGCCGGTGGTGAAGAAACAGGAGCCGGAAACGAAGCCGGCCAGCCGACCAACTTCCCCAGCGGCGCCGGTGCGGCCGGTTCCAGCTCGTCCGGCAAGTAAAGGCGCTCTTCTTCGATTTGCCTGCATAACTGATATGATGCTGCTTCCCCTTGCTGCATCTATCAAGGGGCCACTGAAATCGCTATCAATTAGCTCTGGTGCAATCGTCGTTGGATTGTGTGTGTGTTTAGTAAGAGGCCAGTGTGGGATAGTAAGGGAAAAGTTGTTTTTTTTTACTTCTGCCGGGTGTGTGCGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6706#2 CCGGAAGTGAAGAAGGAAGTGAAAAAAAAAAGCCAACGGACAGTGGTAATGGCACAACAC 60 consensus_6706#3 ------------------------------------------------------------ consensus_6706#0 ------------------------------------------------------------ consensus_6706#1 ------GCGAAGGGCTCAGCCGGCAGCACGTGCTGACGCGCATCGGCGTGATGTCGCTGA 54 consensus_6706#2 CGGCCGAGGAGGGCGAAAAAGCGGCTGAAGTGAAGAAGGAAGTGAAAGAGGAAGGGGCGG 120 consensus_6706#3 ------------------------------------------------------------ consensus_6706#0 --TGCAATCGTCGTTGGATTGTGGATTGTGTGCGTGTGTTTAGTAAGAGGCCAGTGTGGG 58 consensus_6706#1 TCCGCAAGAAGGTGCAGGAGTTTGAGCACATCAACGGGTACTACAGCATGCCGGAGCTGA 114 consensus_6706#2 ACGATGCGACCGACAAGAAGTCGGCGGGCGACAACAA--GAAGGATGAAAGCAGCGGCGA 178 consensus_6706#3 ------------------------------------------------------------ consensus_6706#0 ATAGTAAGGGAAAAGTTGTTTTTTTTTTTTTTCACTTCTGCCGGGTGTGTGCGTGAGCAA 118 consensus_6706#1 TCAAGCGCCCGTGTGAGCCGGTCAAGATTGCCGTCGCCGCTCCGGCTGCTGTTGGGGCGG 174 consensus_6706#2 GGTCTCAGCG-AAGGATGAACCGATGGACACCGACGGGGAGAAGAAGGACGACAAGCAAC 237 consensus_6706#3 ------------------------------------------------------------ consensus_6706#0 TGATAGTATA-TGTGATGTGTATCTCCCCTTTTTTTACAATGACTTTCTTCTTCGCATAC 177 consensus_6706#1 CGCCAGGTGGTGAGGGTACGTCCGGGACGGCCGGTGCTGCTGCTCCAGCCAGTGGAGAAA 234 consensus_6706#2 CGTCCGGTGAGGAGGCGATCGATCTGAAGAGTGTCAAGACCGAGGAG-GATGCGGGTGCG 296 consensus_6706#3 ------------------TCGATCTGAAGAGTGTCAAGACCGAGGAG-GATGCGG----- 36 consensus_6706#0 AATTTAATTATCTTTTTTATAATATTTAGAATAACGAACCACCACAG-AACACACACATA 236 consensus_6706#1 CGTCCAAATCGGCCACGA-CGAGCACGAGTGCAACGCCGGCGACCAGTGCTGCGCCCAGC 293 * ** * ** * consensus_6706#2 GTAGCGCCGAAG---AAGGAAGCTGGCGACGAGAAGGAAAAGTCCGAG---GAGAAGAAG 350 consensus_6706#3 -TAGCGCCGAAG---AAGGAAGCTGGCGACGAGAAGGAAAAGTCCGAG---GAGAAGAAG 89 consensus_6706#0 CAAACGAATAAC---GAATTCATTGGCGGGAAGAAGTAACAGTACGAG---GCACACTTT 290 consensus_6706#1 CCGGCCCCGAACGCCAGTGCGTCCGGCGATAAGGAGGAGGAACAACAGTCGGGTGAAAAG 353 * ** **** ** ** * * ** * * consensus_6706#2 CCAGCGGACGGA-GCGGCGAAGAGCAGC--GCGGA-AGAGGCGAAG--AAAGCACCGGTG 404 consensus_6706#3 CCAGCGGACGGA-GCGGCGAAGAGCAGC--GCGGA-AGAGGCGAAG--AAAGCACCGGTG 143 consensus_6706#0 CACCCTCAGAAATGCACTTGCGATAATT--GTGTA-GCATCCTGAT--TGGACAAAATTT 345 consensus_6706#1 GCGACCGATGGCGGTGACAAAGAAAAGCCAACGGACAGTGGTAATGGCACAACACCGGCC 413 * * * ** * * * ** consensus_6706#2 GAAGCCAAGAAGGAGGCCGAGGAA---GAGGACGATGACGATGAGGTGAAGTTCGTGGA- 460 consensus_6706#3 GAAGCCAAGAAGGAGGCCGAGGAA---GAGGACGATGACGATGAGGTGAAGTTCGTGGA- 199 consensus_6706#0 GGATTTAAGGAAGGACTCATTTTAT-TGTGCGCAACAAAAATAGATACACATTTCTGAAC 404 consensus_6706#1 GAGGAGGGCGAAAAAGCGAGAAAAGATGAGGAAGAGAAGGAGAGAATGGGGAAAGCGAA- 472 * * * * * * * * * * consensus_6706#2 -GGATGGCAGCACGCT--GCCGCCGGTGGTGAAGAAACAGG-AGCCGGAAACGAAGCCGG 516 consensus_6706#3 -GGATGGCAGCACGCT--GCCGCCGGTGGTGAAGAAACAGG-AGCCGGAAACGAAGCCGG 255 consensus_6706#0 GGGATTGCAGAGGAATCAGTACTAGGTAGAGGAGGGAAGCATAATCTGCTTCGGGGCGTG 464 consensus_6706#1 -GGAGCGAAGAAAAAGAGAAAGAAAACAGCACGATAAGACGGGTCTTTAGTTGTCGTTGC 531 *** * ** * * * * consensus_6706#2 C--GC--CGGCCC-CAGCACCAGC----CACCACGACCACCACCACCACCACGA-TCGAT 566 consensus_6706#3 CCAGC--CGACCAACTTCCCCAGCGG--CGCCGGTGCGGCCGGTTCCAGCTCGT-CCGGC 310 consensus_6706#0 CGTATAGCGATTGTGTAAGAAAGCAAACAACCACTTAAATTAAGACAAGATTAG-CGAGT 523 consensus_6706#1 CTTCC-GCAGCCGATTTTCCGTTTGA--AATCATTTCCACCGCAACAACAACGGGCCAGC 588 * * * * * consensus_6706#2 ------------------------------------------------------------ consensus_6706#3 AAGTAAAGGCGCTCTT---CTTCGATTTGCCTGCATAACT-GATATGATGCTGCTTCCCC 366 consensus_6706#0 AACATACGGTACCGTAACGTTAGGATTGGGCTGCGCTCCCAGGGGCGTCAGCAAATTACC 583 consensus_6706#1 GGCTGCCGGCAGCCAGTCGCACGGACCGG------------------------------- 617 consensus_6706#2 ------------------------------------------------------------ consensus_6706#3 TTGCTGCATCTATCAAGGGGCCACTGAAATCGCTATCAATTAGCTCTGGTGCAATCGTCG 426 consensus_6706#0 TGTGTAAGCATATAAATTATCGACTAAAAACACTGGCAAACCGGGCTTCTAAAACACGGT 643 consensus_6706#1 ------------------------------------------------------------ consensus_6706#2 ------------------------------------------------------------ consensus_6706#3 TTGGATTGTGTGTGTGTTTAGTAAGAGGCCAGTGTGGGATAGTAAGGGAAAAGTTGTTTT 486 consensus_6706#0 TCAAATA----------------------------------------------------- 650 consensus_6706#1 ------------------------------------------------------------ consensus_6706#2 ---------------------------- consensus_6706#3 TTTTTACTTCTGCCGGGTGTGTGCGTGA 514 consensus_6706#0 ---------------------------- consensus_6706#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||