These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1043 fasta sequence [CGCAAAAGCCTGAAGTAATACCGATCCCCAACATCACCGCCGAAACTGTTGCACGTTCCTTTATTACAGGATGGATTTCGAGATATGGTGTTCCCTCTAAAAAAT-AACCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGCACT-CCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATGTTTTGACGAACCATCGAATTCACCT-AACATCACGCCTGACTACATAGCAAATCT-AAAAAATATAATGTCATCGTTGAAGCCGT-CCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATT-AAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGAACTGCCGTCCATCAGACGAGATATGGTAGGAAAATTTATCTTCCAGATAAA-TTTTAAATAAAGGGGGAAGTGATGTGGCGTACCTCGCACGCAAGCTGCACCACACTATAGTTGCGCTAATACACCACACCTGCGTTACACCAAAACTTGCGTTACACCGCATGCAAGCAATCGGCTTAATTCGGTAATCGTACCGAACCGGATT-AACTGCTACCGTGCATCGGAAATAAAATATAAACGCTCTCTTTCATTTTTCCGC] [+] EMBL CNS08ZWE [CGCAAAAGCCTGAAGTAATACCGATCCCCAACATCACCGCCGAAACTGTTGCACGTTCCTTTATTACAGGATGGATTTCGAGATATGGTGTTCCCTCTAAAAAATAAACCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGCACT CCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATGTTTTGACGAACCATCGAATTCACCTAAACATCACGCCTGACTACATAGCAAATCTAAAAAAATATAATGTCATCGTTGAAGCCGT CCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATTAAAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGAACTGCCGTCCATCAGACGAGATATGGTAGAAAAATTTATCTTCCAGATAAA TTTTAAATAAAGGGGGAAGTGATGTGGCGTACCTCGCACGCAAGCTGCACCACACTATAGTTGCGCTAATACACCACACCTGCGTTACACC ACACTTGCGTTACACCGCATGCAAGCAATCGGCTTAATTCGGTAATCGTACCGAACCGGA ] [+] EMBL CNS08FHQ [ CTGAAGTAATACCGATCCCCAACATCACCGCCGAAACTGTTGCACGTTCCTTTATTACAGGATGGATTTCGAGATATGGTGTTCCCTCT AAAAT AACCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGCACTCCCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATGTTTTGACGAACCATCGAATTCACCT AACATCACGCCTGACTACATAGCAAATCT AAAAAATATAATGTCATCGTTGAAGCCGT CCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATT AAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGAACTGCCGTCCATCAGACGAGATATGGTAGGAAAATTTATCTTCCAGATAAA TTTTAAATAAAGGGGGAAGTGATGTGGCGTACCTCGCACGCAAGCAGCACCACACTATA ] [-] EMBL CNS08FHR [ AAAT AACCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGAACT CCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATGTTTTGACGAACCATCGAATTCACCT AACATCACGCCTGACTACATAGCAAATCT AAAAAATATAATGTCATCGTTGAAGCCGT CCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATT AAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGTACTGCCGTCCATCAGACGAGATATGGTAGGAAAATTTATCTTCCAGATAAATTTTTAAATAAAGGGGGAAGTGATGTGGCGTACCTCGCACGCAAGCTGCACCACACTATAGTTGCGCTAATACACCACACCTGCGTTACACCAAAACTTGCGTTACACCGCATGCAAGCAATCGGCTTAATTCGGTAATCGTACCGAACCGGATT AACTGCTACCGTGCATCGGAAATAAAATATAAACGCTCTCTTTC ] [-] EMBL CNS08ZWF [ CCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGAACT CCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATGTTTTGACGAACCATCGAATTCACCT AACATCACGCCTGACTACATAGCAAATCT AAAAAATATAATGTCATCGTTGAAGCCGTCCCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATT AAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGAACTGCCGTCCATCAGACGAGATATGGTAGGAAAATTTATCTTCCAGATAAA TTTTAAATAAAGGGGGAAGTGTTGTGGCGTACCTCGCACGCAAGCTGCACCACACTATAGTTGCGCTAATACACCACACCTGCGTTACACCAAAACTTGCGTTACACCGCATGCAAGCAATCGGCTTAATTCGGTAATCGTACCGAACCGGATTAAACTGCTACCGTGCATCGGAAATAAAATATAAACGCTCTCTTTCATTTTTCCGC] consensusID : consensus_6715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCTAAAATAACCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGCACTCCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATTTTTTGACGAACCATCGAATTCACCTAACATCACGCCTGACTACATAGCAAATCTAAAAAATATAATGTCATCGTTGAAGCCGTCCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATTAAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATC] [+] EMBL BM652375 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCTAAAATAACCACCGATCTCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGCACTCCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATTTTTTGACGAACCATCGAATTCACCTAACATCACGCCTGACTACATAGCAAATCTAAAAAATATAATGTCATCGTTGAAGCCGTCCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATTTAAAATATTAAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATC] consensusID : consensus_6715#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [CCGCCCACGCGTCCGGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGAACTGCCGTCCATCAGACGAGATATGGTAGGAAAATTTATCTTCCAGATAAATTTTAAATAAAGGGGGAAGTGATGTGGCGTACCTCGCACGCAAGCTGCACCACACTATAGTTGCGCTAATACACCACACCTGCGTTACACCACACTTGCGTTACACCGCATGCAAGCAATCGGCTTAATTCGGTAATCGTACCGAACCGGATAACTGCACTACCGTGCATCGGAAATAAAATATAAACGCTCTCTTTCATTTTGACCGCTAAGCGC] [+] EMBL BM626211 [CCGCCCACGCGTCCGGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAGCACCACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACCGACCCACTTGCGACTCGAACTGCCGTCCATCAGACGAGATATGGTAGGAAAATTTATCTTCCAGATAAATTTTAAATAAAGGGGGAAGTGATGTGGCGTACCTCGCACGCAAGCTGCACCACACTATAGTTGCGCTAATACACCACACCTGCGTTACACCACACTTGCGTTACACCGCATGCAAGCAATCGGCTTAATTCGGTAATCGTACCGAACCGGATAACTGCACTACCGTGCATCGGAAATAAAATATAAACGCTCTCTTTCATTTTGACCGCTAAGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6715#0 CGCAAAAGCCTGAAGTAATACCGATCCCCAACATCACCGCCGAAACTGTTGCACGTTCCT 60 consensus_6715#2 ------------------------------------------------------------ consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TTATTACAGGATGGATTTCGAGATATGGTGTTCCCTCTAAAAAATAACCACCGATCTCGG 120 consensus_6715#2 ------------------------------------------------------------ consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 AAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAACGCTCGGAATCGACCACCT 180 consensus_6715#2 ------------------------------------------------------------ consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCGAAAGGATGCATCGACAGCT 240 consensus_6715#2 ------------------------------------------------------------ consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 AAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGGAAGCACTCCCAATAGTGTT 300 consensus_6715#2 ------------------------------------------------------------ consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 GCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAACCAGTGCAGAACTCATCTA 360 consensus_6715#2 ------------------------------------------------------------ consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TGGTACAACACTTCGATTACCTGGTGAATGTTTTGACGAACCATCGAATTCACCTAACAT 420 consensus_6715#2 ------------------------------------------------------------ consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 CACGCCTGACTACATAGCAAATCTAAAAAATATAATGTCATCGTTGAAGCCGTCCCCCAC 480 consensus_6715#2 ------------------------------------------------------------ consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 ATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAACAACTAAATTCCTGTTCCCA 540 consensus_6715#2 ------------------------------------------------------------ consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCCCTCCTTATGATGGTCCATT 600 consensus_6715#2 ------------------------------------------------------------ consensus_6715#1 ------------------------------------------------------------ consensus_6715#0 TAAAATATTAAAACGTAACAAGAAATCTTTCGTTTTAGATATCAGAGGCAGGAAAAGTGA 660 consensus_6715#2 -----------------------------------------CCGCCCACGCGTCCGGTGA 19 consensus_6715#1 -----CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCTAA 55 * * * * * consensus_6715#0 AATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAG 720 consensus_6715#2 AATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATGATGAGTCTCCGATCCAAAG 79 consensus_6715#1 AATAACCACCGATC-TCGGAAGGCAGTTTGAATCGGAAATGTTTCGTTCATTGTCCGCAA 114 *** *** ***** * ****** * * ** **** * ** *** * consensus_6715#0 CACC--------ACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACC------ 766 consensus_6715#2 CACC--------ACCCCCGTTGATGAGGAAAACAATCTGCTCGCCAAAACGACC------ 125 consensus_6715#1 CGCTCGGAATCGACCACCTTCGAACAACACCTTACCACCCCCAATCAAACGGCCAGATCG 174 * * *** ** * ** * * * * * ***** ** consensus_6715#0 ----GACCCACTTGCGACTCGAA----CTGCCGTCCATCAGACGAGATATGGTAGGAAAA 818 consensus_6715#2 ----GACCCACTTGCGACTCGAA----CTGCCGTCCATCAGACGAGATATGGTAGGAAAA 177 consensus_6715#1 AAAGGATGCATCGACAGCTAAAAACCGCTATCCTTTGCCACAAAAACGCTCGTTGGACGG 234 ** ** * ** ** ** * * ** * * * ** *** consensus_6715#0 TTTATCTTCCAG--------------ATAAATTTTAA-ATAAAGGGGGAAGT-GATGTGG 862 consensus_6715#2 TTTATCTTCCAG--------------ATAAATTTTAA-ATAAAGGGGGAAGT-GATGTGG 221 consensus_6715#1 AAGCACTCCCAATAGTGTTGCTTGGTATGCGCTCCACCATAAAAGAAGACATCGGTGCAA 294 ** *** ** * * ***** * ** * * ** consensus_6715#0 C--GTACCTCGCACGCAAGCTGCACCACACTATAGTTGC--------------GCTAATA 906 consensus_6715#2 C--GTACCTCGCACGCAAGCTGCACCACACTATAGTTGC--------------GCTAATA 265 consensus_6715#1 CCAGTGCAGAACTCATCTATGGTACAACACTTCGATTACCTGGTGAATTTTTTGACGAAC 354 * ** * * * * ** ***** ** * * * consensus_6715#0 CACCACACCTGCGTTACACCAAAACTTGCGTTACACCGCATGCAAGCAAT---------C 957 consensus_6715#2 CACCACACCTGCGTTACACCACA-CTTGCGTTACACCGCATGCAAGCAAT---------C 315 consensus_6715#1 CATCGAATTCACCTAACATCACGCCTGACTACATAGCAAATCTAAAAAATATAATGTCAT 414 ** * * * * *** ** ** * * * * ** ** *** consensus_6715#0 GGCTTAATTCGGTAATCGTACCGAACCGGATTAACTGC--TACCGTGCATCGGAAATAAA 1015 consensus_6715#2 GGCTTAATTCGGTAATCGTACCGAACCGGAT-AACTGCACTACCGTGCATCGGAAATAAA 374 consensus_6715#1 CGTTGAAGCCGTCCCCCACATCGAACCACAACACGAAAGAAAAAGTATATGTACAAAAAC 474 * * ** ** * * ****** * * * ** ** ** ** consensus_6715#0 ATATAAACGCTCTCTTTCAT---TTTT-CCGC---------------------------- 1043 consensus_6715#2 ATATAAACGCTCTCTTTCAT---TTTGACCGC-TAAGCGC-------------------- 410 consensus_6715#1 AACTAAATTCCTGTTCCCATGTTTTTGTCCGCATCGACGCCGTGAAACCCGCTTTAACCC 534 * **** * * *** *** **** consensus_6715#0 ------------------------------------------------------------ consensus_6715#2 ------------------------------------------------------------ consensus_6715#1 CTCCTTATGATGGTCCATTTAAAATATTAAAACGTAACAAGAAATCTTTCGTTTTAGATA 594 consensus_6715#0 ------------------------------------------------------------ consensus_6715#2 ------------------------------------------------------------ consensus_6715#1 TCAGAGGCAGGAAAAGTGAAATTTCCATCGATCGTTTGAAGGCCGCATTCATGATGAATG 654 consensus_6715#0 -------------- consensus_6715#2 -------------- consensus_6715#1 ATGAGTCTCCGATC 668 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||