These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1879 fasta sequence [CCGGCTTGAGCCGTGCGGACGCAAATTTTCTCCGTCGATCGCAACACCAGCAACCTGCGCCTGGTAGTCCACCGCAACTGCAGCAGTAGTAGACTACCTGATTGATCGGTGTCTTCAAAGCCATCGATCGGCGAGTGTAAACGGCTTCTGGTCTACGTCTGCCCTGCGCCTGCGTTTTTGAAAACACAAAACTTCCCCACACGCAGCAACCCGCAACGGCCCTGCTAGGATGGATCTTCGAGCGAGCGCAGAGTCGGGCCACAACAACGAGCTGACGATGACGGAGGAGCGCAAGATCACGTCCACCCCGGTGATGGAATTTTATCGCGACAAGTGTGTACTGATCACCGGAGGTACCGGCTTTATCGGGCGCTTGCTGATCGAGAAGCTGCTTAGAATTAACGTCAGACAGATTATTCTACTTTCCCGACCGAAGAAGGGCAAAACAACGCAGCAGCGTTGCGACGATCTGTTCAGCAGCATCGTCTTTATGAACCTGAAGAAAGACTGCCCCACGTTCATCGAGCGTGTCAAGCTGGTCGATGCGGATCTGCAGCACCCGTCCCTCGGCCTCTCGGACGAATCGATCGAGTACATTGTGAACAATGCGCAGATAGTGCTGCACGCCGCCTCGGACGTCCGCTTCGACCAGGCGCTCAAGAAAGCGATCGAGGTGAACGTGCGCGGCACGCGCGATCTGCTGCGCATCGCGGAGAAGATCGTCAATCTGGAGCTGTTCGTGTACATCTCGACCGCGTACTCGAACTGCCCCCAGGGACTGATCAAGGAGCAGTTCTACACGCCACCGTCCGAGCCGGAAAAGATGATCCAGCTGGTCGAGGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCCCTGGCCGAATACGTACGTCTACACGAAGGCGCTCACCGAGGACGTGGTACGGCAGTAC-GGCGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTGTGATTGCTACCAACGAGGAACCGATCGGTGGCTGGACGGACAACATCTACGGGCTGAACGGTGTGATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCGGACATCATACCGGCGGACATAGTCGTGAATACGGTGCTTGCCGCCGGCTGGCAAACCTACGTAGAACGTTTTATCTATCACCACCTTAGGAAAGGCGACCGTCCGCTGCCGGAGGCGAAGACGAACGGGGAGCTGAAGGGTGTGGCCAAACCGCGCACCAAAATTTACAACTGTGTCACCGGAAACGACAATCCCATCTCGTACCAAAAGATCTACAAGTACTCGATCGAGGTGGGTAAACATTGTCCGCCGAAGAAATCGCTCTGGATCGTGTGCCACAACACGACGACGAACAAGTATTTGTATGAGTTCTACAAAGTGATCTACCATCTGCTGCCCGCACTGTTGATTGACACGTACCTGCGAGTGATCAGACGCACACCGAGAGTTATG-G-AGTTGGAACATGTTTTGAGATGCAATGCATGTAATGTGCTTGTTTCTTATCATTCTAGAGTTATGGACCTTTATCGAAAGGTGCACAAATTCGCCACAGTCATCGAATACTTTGCCAACGGACGATGGACATTCGAGAATGACAATTTGAAATCTCTGAGAGAAAAGTAAGTACTGGACATTGGCTAGACATTCTTCTTCTACAACAGAATGCTCTCTCAAATTCATAGGCTGTCCCCAGACGATCAGATTATGTTCCAGTGCAACATTCAGAAGATTGAGTGGGCCGACTACTTCTGGACGTACATTCATGGGTTGCGCAAGCACATCGCCAACGAGCCGCTGGAGAACCTGGACGAGGCG] [+] EMBL BM616694 [CCGGCTTGAGCCGTGCGGACGCAAATTTTCTCCGTCGATCGCAACACCAGCAACCTGCGCCTGGTAGTCCACCGCAACTGCAGCAGTAGTAGACTACCTGATTGATCGGTGTCTTCAAAGCCATCGATCGGCGAGTGTAAACGGCTTCTGGTCTACGTCTGCCCTGCGCCTGCGTTTTTGAAAACACAAAACTTCCCCACACGCAGCAACCCGCAACGGCCCTGCTAGGATGGATCTTCGAGCGAGCGCAGAGTCGGGCCACAACAACGAGCTGACGATGACGGAGGAGCGCAAGATCACGTCCACCCCGGTGATGGAATTTTATCGCGACAAGTGTGTACTGATCACCGGAGGTACCGGCTTTATCGGGCGCTTGCTGATCGAGAAGCTGCTTAGAATTAACGTCAGACAGATTATTCTACTTTCCCGACCGAAGAAGGGCAAAACAACGCAGCAGCGTTGCGACGATCTGTTCAGCAGCATCGTCTTTATGAACCTGAAGAAAGACTGCCCCACGTTCATCGAGCGTGTCAAGCTGGTCGATGCGGATCTGCAGCACCCGTCCCTCGGCCTCTCGGACGAATCGATCGAGTACATTGTGAACAATGCGCAGATAGTGCTGCACGCCGCCTCGGACGTCCGCTTCGACCAGGCGCTCAAGAAAGCGATCGAGGTGAACGTGCGCGGCACGCGCGAT ] [+] EMBL BM581473 [ ccgGGACGCAAATTTTCTCCGTCGATCGCAACACCAGCAACCTGCGCCTGGTAGTCCACCGCAACTGCAGCAGTAGTAGACTACCTGATTGATCGGTGTCTTCAAAGCCATCGATCGGCGAGTGTAAACGGCTTCTGGTCTACGTCTGCCCTGCGCCTGCGTTTTTGAAAACACAAAACTTCCCCACACGCAGCAACCCGCAACGGCCCTGCTAGGATGGATCTTCGAGCGAGCGCAGAGTCGGGCCACAACAACGAGCTGACGATGACGGAGGAGCGCAAGATCACGTCCACCCCGGTGATGGAATTTTATCGCGACAAGTGTGTACTGATCACCGGAGGTACCGGCTTTATCGGGCGCTTGCTGATCGAGAAGCTGCTTAGAATTAACGTCAGACAGATTATTCTACTTTCCCGACCGAAGAAGGGCAAAACAACGCAGCAGCGTTGCGACGATCTGTTCAGCAGCATCGTCTTTATGAACCTGAAGAAAGACTGCCCCACGTTCATCGAGCGTGTCAAGCTGGTCGATGCGGATCTGCAGCACCCGTCCCTCGGCCTCTCGGACGAATCGATCGAGTACATTGTGAACAATGCGCAGATAGTGCTGCACGCCGCCTCGGACGTCCGCTTCGACCAGGCGCTCAAGAAAGCGATCGAGGTGAACGTGCGCGGCACGCGC ] [+] EMBL BM624295 [ CCGGAAGAAAGACTGCCCCACGTTCATCGAGCGTGTCAAGCTGGTCGATGCGGATCTGCAGCACCCGTCCCTCGGCCTCTCGGACGAATCGATCGAGTACATCGTGAACAATGCGCAGATAGTGCTGCACGCCGCCTCGGACGTCCGCTTCGACCAGGCGCTGAAGAAAGCGATCGAGGTGAACGTGCGCGGCACGCGCGATCTGCTGCGCATCGCGGAGAAGATCGTCAATCTGGAGCTGTTCGTGTACATCTCGACCGCGTACTCGAACTGCCCCCAGGGACTGATCAAGGAGCAGTTCTACACGCCACCGTCCGAGCCGGAAAAGATGATCCAGCTGGTCGAGGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCCCTGGCCGAATACGTACGTCTACACGAAGGCGCTCACCGAGGACGTGGTACGGCAGTAC GGCGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTGTGATTGCTACCAACGAGGAACCGATCGGTGGCTGGACGGACAACATCTACGGGCTGAACGGTGTGATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCGGACATCAT ] [+] EMBL BM630634 [ ccgGGTCGAGGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCCCTGGCCGAATACGTACGTCTACACGAAGGCGCTCACCGAGGACGTAGTGCGGCAGTACTGGCGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTGTGATTGCTACTAACGAGGAACCGATCGGTGGCTGGACCGACAACATCTACGGGCTGAACGGTGTGATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCGGACATCATACCGGCGGACATAGTCGTGAATACGGTGCTTGCCGCCGGCTGGCAAACCTACGTAGAACGTTTTATCTATCACCACCTTAGGAAAGGCGACCGTCCGCTGCCGGAGGCGAAGACGAACGGGGAGCTGAAGGGTGTGGCCAAACCGCGCACCAAAATTTACAACTGTGTCACCGGAAACGACAATCCCATCTCGTACCAAAAGATCTACAAGTACTCGATCGAGGTGGGTAAACATTGTCCGCCGAAGAAATCGCTCTGGATCGTGTGCCACAACACGACGACGAACAAGTATTTGTATGAGTTCTACAAAGTGATCTACCATCTGCTGCCCGCACTGTTGATTGACACGTACCTGCGAGTGATCAGACGCACACCGAGAGTTATG G A ] [+] EMBL BX607808 [ CCGACCGCTGCCGGAGGCCAAGTCGAACGGGGAGCTGAAGGGTGTGGCCAAACCGCGCACCAAAATTTACAACTGTGTCACCGGAAACGACAATCCCATCTCGTACCAAAAGATCTACAAGTACTCGATCGAGGTGGGTAAACATTGCCCGCCGAAGAAATCGCTCTGGATCGTGTGTCACAACACGACGACGAACAAGTATTTGTATGAGTTCTACAAAGTGATCTACCATCTGCTGCCTGCACTGTTGATCGACACGTACCTGCGAGTGATCAGACGCACACCGAG G TAGGCGTTGTTGGAACATGTTTTGAGATGCAATGCATGTAATGTGCTTGTTTCTTATCATTCTAGAGTTATGGACCTTTATCGAAAGGTGCACAAATTCGCCACAGTCATCGAATACTTTGCCAACGGACGATGGACATTCGAGAATGACAATTTGAAATCTCTGAGAGAAAAGTAAGTACTGGACATTGGCTAGACATTCTTCTTCTACAACAGAATGCTCTCTCAAATTCATAGGCTGTCCCCAGACGATCAGATTATGTTCCAGTGCAACATTCAGAAGATTGAGTGGGCCGACTACTTCTGGACGTACATTCATGGGTTGCGCAAGCACATCGCCAACGAGCCGCTGGAGAACCTGGACGAGGCG] consensusID : consensus_6719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCGGGTGAACGTGCGCGGCACGCGCGATCTGCTGCGCATCGCGGAGAAGATCGTCAATCTGGAGCTGTTCGTGTACATCTCGACCGCGTACTCGAACTGCCCCCAGGGACTGATCAAGGAGCAGTTCTACACGCCACCGTCCGAGCCGGAAAAGATGATCCAGCTGGTCGAGGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCCCTGGCCGAACACGTACGTCTACACGAAGGCACTCACCGAGGACGTGGTGCGGCAGTACGGCGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTGGTAGGTGTTGGTGTGGGCAACAGGGAGGTTTTTGAGAGAGCAGCACACAACTAAACCTGGCTCTACTCATTCTACAGTGATTGCTACTAACGAGGAACCGATCGGTGGCTGGACCGACAACATCTACGGGCTGAACGGTGTGATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCGGACATCATACCGGCGGACATAGTCGTGAATACGGTGCTGGCCGCCGGCTGGCAAACCTACGTAGAACGGTAAGCTAGAGCTTTTGTTTCCATCCCGCAGCAGGCGGGGGCGCTGTCCAAGCACTGAAGT] [+] EMBL BM595512 [CCGGGTGAACGTGCGCGGCACGCGCGATCTGCTGCGCATCGCGGAGAAGATCGTCAATCTGGAGCTGTTCGTGTACATCTCGACCGCGTACTCGAACTGCCCCCAGGGACTGATCAAGGAGCAGTTCTACACGCCACCGTCCGAGCCGGAAAAGATGATCCAGCTGGTCGAGGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCCCTGGCCGAACACGTACGTCTACACGAAGGCACTCACCGAGGACGTGGTGCGGCAGTACGGCGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTGGTAGGTGTTGGTGTGGGCAACAGGGAGGTTTTTGAGAGAGCAGCACACAACTAAACCTGGCTCTACTCATTCTACAGTGATTGCTACTAACGAGGAACCGATCGGTGGCTGGACCGACAACATCTACGGGCTGAACGGTGTGATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCGGACATCATACCGGCGGACATAGTCGTGAATACGGTGCTGGCCGCCGGCTGGCAAACCTACGTAGAACGGTAAGCTAGAGCTTTTGTTTCCATCCCGCAGCAGGCGGGGGCGCTGTCCAAGCACTGAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6719#0 CCGGCTTGAGCCGTGCGGACGCAAATTTTCTCCGTCGATCGCAACACCAGCAACCTGCGC 60 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 CTGGTAGTCCACCGCAACTGCAGCAGTAGTAGACTACCTGATTGATCGGTGTCTTCAAAG 120 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 CCATCGATCGGCGAGTGTAAACGGCTTCTGGTCTACGTCTGCCCTGCGCCTGCGTTTTTG 180 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 AAAACACAAAACTTCCCCACACGCAGCAACCCGCAACGGCCCTGCTAGGATGGATCTTCG 240 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 AGCGAGCGCAGAGTCGGGCCACAACAACGAGCTGACGATGACGGAGGAGCGCAAGATCAC 300 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 GTCCACCCCGGTGATGGAATTTTATCGCGACAAGTGTGTACTGATCACCGGAGGTACCGG 360 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 CTTTATCGGGCGCTTGCTGATCGAGAAGCTGCTTAGAATTAACGTCAGACAGATTATTCT 420 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 ACTTTCCCGACCGAAGAAGGGCAAAACAACGCAGCAGCGTTGCGACGATCTGTTCAGCAG 480 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 CATCGTCTTTATGAACCTGAAGAAAGACTGCCCCACGTTCATCGAGCGTGTCAAGCTGGT 540 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 CGATGCGGATCTGCAGCACCCGTCCCTCGGCCTCTCGGACGAATCGATCGAGTACATTGT 600 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 GAACAATGCGCAGATAGTGCTGCACGCCGCCTCGGACGTCCGCTTCGACCAGGCGCTCAA 660 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 GAAAGCGATCGAGGTGAACGTGCGCGGCACGCGCGATCTGCTGCGCATCGCGGAGAAGAT 720 consensus_6719#1 ---------CCGGGTGAACGTGCGCGGCACGCGCGATCTGCTGCGCATCGCGGAGAAGAT 51 * ************************************************ consensus_6719#0 CGTCAATCTGGAGCTGTTCGTGTACATCTCGACCGCGTACTCGAACTGCCCCCAGGGACT 780 consensus_6719#1 CGTCAATCTGGAGCTGTTCGTGTACATCTCGACCGCGTACTCGAACTGCCCCCAGGGACT 111 ************************************************************ consensus_6719#0 GATCAAGGAGCAGTTCTACACGCCACCGTCCGAGCCGGAAAAGATGATCCAGCTGGTCGA 840 consensus_6719#1 GATCAAGGAGCAGTTCTACACGCCACCGTCCGAGCCGGAAAAGATGATCCAGCTGGTCGA 171 ************************************************************ consensus_6719#0 GGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCC 900 consensus_6719#1 GGCGATGGACGAGCGGTTCGAGGAGCACATGAACAAAACGGTGAACGATTTCATTCACCC 231 ************************************************************ consensus_6719#0 CTGGCCGAATACGTACGTCTACACGAAGGCGCTCACCGAGGACGTGGTACGGCAGTACGG 960 consensus_6719#1 CTGGCCGAACACGTACGTCTACACGAAGGCACTCACCGAGGACGTGGTGCGGCAGTACGG 291 ********* ******************** ***************** *********** consensus_6719#0 CGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTG---------------------- 998 consensus_6719#1 CGAGCTGCTTCCGATCGCCGTCGTTCGACCATCGATTGGTAGGTGTTGGTGTGGGCAACA 351 ************************************** consensus_6719#0 -------------------------------------------------------TGATT 1003 consensus_6719#1 GGGAGGTTTTTGAGAGAGCAGCACACAACTAAACCTGGCTCTACTCATTCTACAGTGATT 411 ***** consensus_6719#0 GCTACCAACGAGGAACCGATCGGTGGCTGGACGGACAACATCTACGGGCTGAACGGTGTG 1063 consensus_6719#1 GCTACTAACGAGGAACCGATCGGTGGCTGGACCGACAACATCTACGGGCTGAACGGTGTG 471 ***** ************************** *************************** consensus_6719#0 ATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCG 1123 consensus_6719#1 ATTGCGGGCGTTGCGCTTGGCATCATTCGCATCATGCACGTGGACGACAACAACAAGGCG 531 ************************************************************ consensus_6719#0 GACATCATACCGGCGGACATAGTCGTGAATACGGTGCTTGCCGCCGGCTGGCAAACCTAC 1183 consensus_6719#1 GACATCATACCGGCGGACATAGTCGTGAATACGGTGCTGGCCGCCGGCTGGCAAACCTAC 591 ************************************** ********************* consensus_6719#0 GTAGAACGTTTTATCTATCACCACCTTAGGAAAGGCGACCGTCCGCTGCCGGAGGCGAAG 1243 consensus_6719#1 GTAGAACG----GTAAGCTAGAGCTTTTGTTT--CCATCCCGCAGCAGGCGGGGGCGCTG 645 ******** * * * ** * * ** * ** * *** **** * consensus_6719#0 ACGAACGGGGAGCTGAAGGGTGTGGCCAAACCGCGCACCAAAATTTACAACTGTGTCACC 1303 consensus_6719#1 TCCAA----GCACTGAAGT----------------------------------------- 660 * ** * ****** consensus_6719#0 GGAAACGACAATCCCATCTCGTACCAAAAGATCTACAAGTACTCGATCGAGGTGGGTAAA 1363 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 CATTGTCCGCCGAAGAAATCGCTCTGGATCGTGTGCCACAACACGACGACGAACAAGTAT 1423 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 TTGTATGAGTTCTACAAAGTGATCTACCATCTGCTGCCCGCACTGTTGATTGACACGTAC 1483 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 CTGCGAGTGATCAGACGCACACCGAGAGTTATGGAGTTGGAACATGTTTTGAGATGCAAT 1543 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 GCATGTAATGTGCTTGTTTCTTATCATTCTAGAGTTATGGACCTTTATCGAAAGGTGCAC 1603 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 AAATTCGCCACAGTCATCGAATACTTTGCCAACGGACGATGGACATTCGAGAATGACAAT 1663 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 TTGAAATCTCTGAGAGAAAAGTAAGTACTGGACATTGGCTAGACATTCTTCTTCTACAAC 1723 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 AGAATGCTCTCTCAAATTCATAGGCTGTCCCCAGACGATCAGATTATGTTCCAGTGCAAC 1783 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 ATTCAGAAGATTGAGTGGGCCGACTACTTCTGGACGTACATTCATGGGTTGCGCAAGCAC 1843 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 ATCGCCAACGAGCCGCTGGAGAACCTGGACGAGGCG 1879 consensus_6719#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||