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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6723#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1466 fasta sequence
[CCGCCCACGCGTCCGTTTACACGGTGCGTTCTTGTGTGCAGCAATAAAGTTGCACCAACAAACAAGTCTTAAATAACTTATATTGCATCATTTTGAATTTCGCAAAAGTTACAAATTGCCTCTAATTCGTTTTCACTACATTCTTCAACTCGAAAACTTACAAAATCAGTAAAAATAGTGAAACTCAAACCACCTCTCAGCAGCAATTACGCTCCGTGTAGAACCACCCTAACAATTTTCATCACCCTCCTCACACGCACCAGAAACTTTGTATTATGGTTTATCGTACTATTCCGAGGTTTGCCTAAACGAGTGTGACCCTGCATGAGTGCGCTAATAGTGTAGAGCAACCCGTAGCAACCGCAGAAAGATGGCATACCGTGTCCTGACGACGGCCAAAAAGCTCGAATCCGTGCTGGTTGGGCTGAACAGACCGCACCGTACCGTGAACGGGCCCGACTGTGAACAGATCATTCGCAGCCTAAGCTACCTGCAGTCGAGAAGCAACAAAACGTGGAACGAGTTCCTGCACCGCATACAGGTGTTCTGCGAGAAGCCACCGAAAGGGTTCGAGAAGTACTTCAAACCACCCGGCGCCGCTAGCGCACAGCAGGCGAAGCAGGCCAACAAGGCAGGTGAAAGTGGGACCAGCAAAGATGGCAGCAGCAGCAGCAGCAACAGCGCAGCCGAACAGTCCGCCAGCCAGTCCAACGCGCCGCCCGGTGCAACGTCACGCAAGAACGACTGGAATTTGGGCATGTTTTCGCCACAGCCGGCCCGAGGCAAGGGTGGTTCCAGCGGCAGTGGCGGTTCCGGCCGACCCATCGGCGGCGGTGAAGAGGGCGATAAGGAGAAGATGCTGATGTTTGGTGCGCTGGCCGGTGTGGCATTGATATCGGCGATCGCTTTCTTCGAGATGGGATACAAAGAAATTGCGTGGAAGGAATTCGTGAACAACTA-CC-TCGCTCGCGGTATCGTCGACAAGCTGGAAGTGGTTAACAAAAAATGGGTCCGCG-TTAAGCTAACGCCCGGCAATGCTACAGATTCATCGGGCATTCTCTGGNTC-ACATTGGCAGCGTGGACTCGTTCGAGCGCAACCTGGAGAGTGTGCAGACGGACATGAACATCGAGCCGGTCAACTTTGTGCCGGTCATCTATCGGAGCGAGCTGGAAGCGTCCAGCTTAACGGGTCTGCTGCCGACGCTGCTCATCATCGGGTTCCTCGTCTACATGATGCGCCGCTCGTCCGAGATGATGGGCGGTGGTCGGGGCGGACGCCGCGGTGGAGGTCTGTTCGGTGGCGTCATGCAATCGACCGCCAAGCTAATCAATGCTAATGAAATCAACGTTGGATTCAAGGATGTGGCCGGTTGCNAGGAGGCCAAGATCNAAATTATGGAGTTTGTCAACTTCCTCAAAAACCCCCAGCAATACATCGATCTCGGTGCCAAGATTCNCAAGGGCGC]
[+] EMBL BM577574 [CCGCCCACGCGTCCGTTTACACGGTGCGTTCTTGTGTGCAGCAATAAAGTTGCACCAACAAACAAGTCTTAAATAACTTATATTGCATCATTTTGAATTTCGCAAAAGTTACAAATTGCCTCTAATTCGTTTTCACTACATTCTTCAACTCGAAAACTTACAAAATCAGTAAAAATAGTGAAACTCAAACCACCTCTCAGCAGCAATTACGCTCCGTGTAGAACCACCCTAACAATTTTCATCACCCTCCTCACACGCACCAGAAACTTTGTATTATGGTTTATCGTACTATTCCGAGGTTTGCCTAAACGAGTGTGACCCTGCATGAGTGCGCTAATAGTGTAGAGCAACCCGTAGCAACCGCAGAAAGATGGCATACCGTGTCCTGACGACGGCCAAAAAGCTCGAATCCGTGCTGGTTGGGCTGAACAGACCGCACCGTACCGTGAACGGGCCCGACTGTGAACAGATCATTCGCAGCCTAAGCTACCTGCAGTCGAGAAGCAACAAAACGTGGAACGAGTTCCTGCACCGCATACAGGTGTTCTGCGAGAAGCCACCGAAAGGGTTCGAGAAGTACTTCAAACCACCCGGCGCCGCTAGCGCACAGCAGGCGAAGCAGGCCAACAAGGCAGGTGAAAGTGGGACCAGCAAAGATGGCAGCAGCAGCAGCAGCAACAGCGCAGCCGAACAGTCCGCCAGC ]
[+] EMBL BX625566 [ ATTATGGTTTATCGTACTTTTCCGAGGTTTGCCTAAACGATTGTGACCCTGCATGAGTGCGCTAACAGTGTAGAGCAACCCGCAGCAACCGCAGAAAGATGGCATACCGTGTCCTGACGACGGCCAAAAAGCTCGAATCCGTGCTGGTCGGGCTGAACAGACCGCACCGTACCGTGAACGGGCCCGACTGTGAACAGATCATTCGCAGCCTAAGCTACCTGCAGTCGAGAAGCAACAAAACGTGGAACGAGTTCCTGCACCGCATACAGGTGTTCTGCGAGAAGCCACCGAAAGGGTTCGAGAAGTACTTCAAACCACCCGGCGCCGCTAGCGCACAGCAGGCGAAGCAGGCCAACAAGGCAGGTGAAAGTGGGACCAGCAAAGATGGCAGCAGCAGCAGCAGCAACAGCGCAGCCGAACAGTCCGCCAGCCAGTCCAACGCGCCGCCCGGTGCAACGTCACGCAAGAACGACTGGAATCTGGGCATGTTTTCGCCACAGCCGGCCCGAGGCAAGGGTGGTTCCAGCGGCAGTGGCGGTTCCGGCCGACCCATCGGCGGCGGTGAAGAGGGCGATAAGGAGAAGATGCTGATGTTTGGTGCGCTGGCCGGTGTGGCATTGATATCGGCGATCGCTTTCTTCGAGATGGGATACAAAGAAATTGCGTGGAANGAATTCGTGAACAACTA CCTTCGCTCGCGGTATCGTCGACAAGCT ]
[+] EMBL BX625048 [ CGAGTGTGACCCTGCATGAGTGCGCTAATAGTGTAGAGCAACCCGTAGCAACCGCAGAAAGATGGCATACCGTGTCCTGACGACGGCCAAAAAGCTCGAATCCGTGCTGGTTGGGCTGAACAGACCGCACCGTACCGTGAACGGGCCCGACTGTGAACAGATCATTCGCAGCCTAAGCTACCTGCAGTCGAGAAGCAACAAAACGTGGAACGAGTTCCTGCACCGCATACAGGTGTTCTGCGAGAAGCCACCGAAAGGGTTCGAGAAGTACTTCAAACCACCCGGCGCCGCTAGCGCACAGCAGGCGAAGCAGGCCAACAAGGCAGGTGAAAGTGGGACCAGCAAAGATGGCAGCAGCAGCAGCAGCAACAGCGCAGCCGAACAGTCCGCCAGCCAGTCCAACGCGCCGCCCGGTGCAACGTCACGCAAGAACGACTGGAATTTGGGCATGTTCTCGCCACAGCCGGCCCGAGGCAAGGGTGGTTCCAGCGGCAGTGGCGGTTCCGGCCGACCCATCGGCGGCGGTGAAGAGGGCGATAAGGAGAAGATGCTGATGTTTGGTGCGCTGGCCGGTGTGGCATTGATATCGGCGATCGCTTTCTTCGAGATGGGATACAAAGAAATTGCGTGGAAGGAATTCGTGAACAACTA CC TCGCTCGCGGTATCGTCGACAAGCTGGAAGTGGTTAACAAAAAATGGGTCCGCG TTAAGCTAACGCCCGGCAATGCTACAGATTCATCGGGCATTCTCTGGNTC ACATTGGCAGCGTGGACTCGTTCGAGCGCAACCTGGAGAGTGTGCAGACGG ]
[+] EMBL BM636250 [ ccgACAGACCGCACCGTACCGTGAACGGGCCCGACTGTGAACAGATCATTCGCAGCCTAAGCTACCTACAGTCGAGAAGCAACAAAACGTGGAACGAGTTCCTGCACCGCATACAGGTGTTCTGCGAGAAGCCACCGAAAGGGTTCGAGAAGTACTTCAAACCACCCGGCGCCGCTAGCGCACAGCAGGCGAAGCAGGCCAACAAGGCAGGTGAAAGTGGGACCAGCAAAGATGGCAGCAGCAGCAGTAGCAACAGCGCAGCCGAACAATCCGCCAGCCAGTCCAACGCACCGCCCGGTGCAACGTCACGCAAGAACGACTGGAATTTGGGCATGTTTTCGCCACAGCCGGCCCGAGGCAAGGGTGGTTCCAGCGGCAGTGGCGGTTCCGGCCGACCCATCGGCGGCGGTGAAGAGGGTGATAAGGAGAAGATGCTGATGTTTGGTGCGCTGGCCGGTGTTGCATTGATATCGGCGATCGCTTTCTTCGAGATGGGATACAAAGAAATTGCGTGGAAGGAATTCGTGAACAACTACCC TCGCTCGCGGTATCGTCGACAAGCTGGAAGTGGTTAACAAAAAATGGGTCCGCGTTTAAGC ]
[+] EMBL BX625357 [ GGTTAACAAAAAATGGGTCCGCG TTAAGCTAACGCCCGGCAATGCTACAGATTCATCGGGCATTCTCTGGTTCAACATTGGCAGCGTGGACTCGTTCGAGCGCAACCTGGAGAGTGTGCAGACGGACATGAACATCGAGCCGGTCAACTTTGTGCCGGTCATCTATCGGAGCGAGCTGGAAGCGTCCAGCTTAACGGGTCTGCTGCCGACGCTGCTCATCATCGGGTTCCTCGTCTACATGATGCGCCGCTCGTCCGAGATGATGGGCGGTGGTCGGGGCGGACGCCGCGGTGGAGGTCTGTTCGGTGGCGTCATGCAATCGACCGCCAAGCTAATCAATGCTAATGAAATCAACGTTGGATTCAAGGATGTGGCCGGTTGCNAGGAGGCCAAGATCNAAATTATGGAGTTTGTCAACTTCCTCAAAAACCCCCAGCAATACATCGATCTCGGTGCCAAGATTCNCAAGGGCGC]
consensusID : consensus_6723#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[CCGAATAAAGTGTATTATGGTTTATCGTACTATTCCGAGGTTTGCCTAAACGAGTGTGACCCTGCATGAGTGCGCTAATAGTGTAGAGCAACCCGTAGCAACCGCAGAAAGATGGCATACCGTGTCCTGACGACGGCCAAAAAGCTCGAATCCGTGCTGGTTGGGCTGAACAGACCGCACCGTACCGTGAACGGGCCCGACTGTGAACAGATCATTCGCAGCCTAAGCTACCTGCAGTCGAGAAGCAACAAAACGTGGAACGAGTTCCTGCACCGCATACAGGTGTTCTGCGAGAAGCCACCGAAAGGGTTCGAGAAGTACTTCAAACCACCCGGCGCCGCTAGCGCACAGCAGGCGAAGCAGGCCAACAAGGCAGGTGAAAGTGGGACCAGCAAAGATGGCAGCAGCAGCAGCAGCAACAGCGCAGCCGAACAGTCCGCCAGCCAGTCCAACGCGCCGCCCGGTGCAACGTCACGCAAGAACGACTGGAATTTGGGCATGTTCTCGCCACAGCCGGCCCGAGGCAAGGGTGGTTCCAGCGGCAGTGGCGGTTCCGGCCGACCCATCGGCGGCGGTGAAGAGGGCGATAAGGAGAAGATGCTGATGTTTGGTGCGCTGGCCGGTGTGGCATTGATATCGG]
[+] EMBL BM643163 [CCGAATAAAGTGTATTATGGTTTATCGTACTATTCCGAGGTTTGCCTAAACGAGTGTGACCCTGCATGAGTGCGCTAATAGTGTAGAGCAACCCGTAGCAACCGCAGAAAGATGGCATACCGTGTCCTGACGACGGCCAAAAAGCTCGAATCCGTGCTGGTTGGGCTGAACAGACCGCACCGTACCGTGAACGGGCCCGACTGTGAACAGATCATTCGCAGCCTAAGCTACCTGCAGTCGAGAAGCAACAAAACGTGGAACGAGTTCCTGCACCGCATACAGGTGTTCTGCGAGAAGCCACCGAAAGGGTTCGAGAAGTACTTCAAACCACCCGGCGCCGCTAGCGCACAGCAGGCGAAGCAGGCCAACAAGGCAGGTGAAAGTGGGACCAGCAAAGATGGCAGCAGCAGCAGCAGCAACAGCGCAGCCGAACAGTCCGCCAGCCAGTCCAACGCGCCGCCCGGTGCAACGTCACGCAAGAACGACTGGAATTTGGGCATGTTCTCGCCACAGCCGGCCCGAGGCAAGGGTGGTTCCAGCGGCAGTGGCGGTTCCGGCCGACCCATCGGCGGCGGTGAAGAGGGCGATAAGGAGAAGATGCTGATGTTTGGTGCGCTGGCCGGTGTGGCATTGATATCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6723#0 CCGCCCACGCGTCCGTTTACACGGTGCGTTCTTGTGTGCAGCAATAAAGTTGCACCAACA 60
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 AACAAGTCTTAAATAACTTATATTGCATCATTTTGAATTTCGCAAAAGTTACAAATTGCC 120
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 TCTAATTCGTTTTCACTACATTCTTCAACTCGAAAACTTACAAAATCAGTAAAAATAGTG 180
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 AAACTCAAACCACCTCTCAGCAGCAATTACGCTCCGTGTAGAACCACCCTAACAATTTTC 240
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 ATCACCCTCCTCACACGCACCAGAAACTTTGTATTATGGTTTATCGTACTATTCCGAGGT 300
consensus_6723#1 -------------------CCGAATAAAGTGTATTATGGTTTATCGTACTATTCCGAGGT 41
** * * *******************************
consensus_6723#0 TTGCCTAAACGAGTGTGACCCTGCATGAGTGCGCTAATAGTGTAGAGCAACCCGTAGCAA 360
consensus_6723#1 TTGCCTAAACGAGTGTGACCCTGCATGAGTGCGCTAATAGTGTAGAGCAACCCGTAGCAA 101
************************************************************
consensus_6723#0 CCGCAGAAAGATGGCATACCGTGTCCTGACGACGGCCAAAAAGCTCGAATCCGTGCTGGT 420
consensus_6723#1 CCGCAGAAAGATGGCATACCGTGTCCTGACGACGGCCAAAAAGCTCGAATCCGTGCTGGT 161
************************************************************
consensus_6723#0 TGGGCTGAACAGACCGCACCGTACCGTGAACGGGCCCGACTGTGAACAGATCATTCGCAG 480
consensus_6723#1 TGGGCTGAACAGACCGCACCGTACCGTGAACGGGCCCGACTGTGAACAGATCATTCGCAG 221
************************************************************
consensus_6723#0 CCTAAGCTACCTGCAGTCGAGAAGCAACAAAACGTGGAACGAGTTCCTGCACCGCATACA 540
consensus_6723#1 CCTAAGCTACCTGCAGTCGAGAAGCAACAAAACGTGGAACGAGTTCCTGCACCGCATACA 281
************************************************************
consensus_6723#0 GGTGTTCTGCGAGAAGCCACCGAAAGGGTTCGAGAAGTACTTCAAACCACCCGGCGCCGC 600
consensus_6723#1 GGTGTTCTGCGAGAAGCCACCGAAAGGGTTCGAGAAGTACTTCAAACCACCCGGCGCCGC 341
************************************************************
consensus_6723#0 TAGCGCACAGCAGGCGAAGCAGGCCAACAAGGCAGGTGAAAGTGGGACCAGCAAAGATGG 660
consensus_6723#1 TAGCGCACAGCAGGCGAAGCAGGCCAACAAGGCAGGTGAAAGTGGGACCAGCAAAGATGG 401
************************************************************
consensus_6723#0 CAGCAGCAGCAGCAGCAACAGCGCAGCCGAACAGTCCGCCAGCCAGTCCAACGCGCCGCC 720
consensus_6723#1 CAGCAGCAGCAGCAGCAACAGCGCAGCCGAACAGTCCGCCAGCCAGTCCAACGCGCCGCC 461
************************************************************
consensus_6723#0 CGGTGCAACGTCACGCAAGAACGACTGGAATTTGGGCATGTTTTCGCCACAGCCGGCCCG 780
consensus_6723#1 CGGTGCAACGTCACGCAAGAACGACTGGAATTTGGGCATGTTCTCGCCACAGCCGGCCCG 521
****************************************** *****************
consensus_6723#0 AGGCAAGGGTGGTTCCAGCGGCAGTGGCGGTTCCGGCCGACCCATCGGCGGCGGTGAAGA 840
consensus_6723#1 AGGCAAGGGTGGTTCCAGCGGCAGTGGCGGTTCCGGCCGACCCATCGGCGGCGGTGAAGA 581
************************************************************
consensus_6723#0 GGGCGATAAGGAGAAGATGCTGATGTTTGGTGCGCTGGCCGGTGTGGCATTGATATCGGC 900
consensus_6723#1 GGGCGATAAGGAGAAGATGCTGATGTTTGGTGCGCTGGCCGGTGTGGCATTGATATCGG- 640
***********************************************************
consensus_6723#0 GATCGCTTTCTTCGAGATGGGATACAAAGAAATTGCGTGGAAGGAATTCGTGAACAACTA 960
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 CCTCGCTCGCGGTATCGTCGACAAGCTGGAAGTGGTTAACAAAAAATGGGTCCGCGTTAA 1020
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 GCTAACGCCCGGCAATGCTACAGATTCATCGGGCATTCTCTGGNTCACATTGGCAGCGTG 1080
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 GACTCGTTCGAGCGCAACCTGGAGAGTGTGCAGACGGACATGAACATCGAGCCGGTCAAC 1140
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 TTTGTGCCGGTCATCTATCGGAGCGAGCTGGAAGCGTCCAGCTTAACGGGTCTGCTGCCG 1200
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 ACGCTGCTCATCATCGGGTTCCTCGTCTACATGATGCGCCGCTCGTCCGAGATGATGGGC 1260
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 GGTGGTCGGGGCGGACGCCGCGGTGGAGGTCTGTTCGGTGGCGTCATGCAATCGACCGCC 1320
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 AAGCTAATCAATGCTAATGAAATCAACGTTGGATTCAAGGATGTGGCCGGTTGCNAGGAG 1380
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 GCCAAGATCNAAATTATGGAGTTTGTCAACTTCCTCAAAAACCCCCAGCAATACATCGAT 1440
consensus_6723#1 ------------------------------------------------------------
consensus_6723#0 CTCGGTGCCAAGATTCNCAAGGGCGC 1466
consensus_6723#1 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||