|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6728#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1399 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGACGACGACTACACCGACCAGCGCTGGATACTGAAGGCCGAGCAGGAGCTGAACGAGACGGCCGAAAATAAGGCACGCTCGCTGGAGCAGCTGCGCGAGCTGCTGCGGGACGAGCCGAAGCTTACCGTGCCGCTGGACGATGAGAAGTTTCTGCTCAAGTTTCTGCGCCCGCTCGGCTACGATGTGCAGCGGGCGTTCGACTGCATCCGGCACACGTTCGCGATGAAGCGCACCTACGGCAAGGATTACTACGAGGGGCGCATCAAACCGTCGCACATACGGCACATCTACGATTCGGGCATGGTGAGCTTCCTGCCGCTGCGCGACGACGACGGCTGCGGCATATGCGTTACCCAGCTCGGACGTAAATGGAACACCTCCAAGGTTTCGATGTACGACGTGTTGGCCCTGTTCCGCATCAACATCGAAGCGTCGCTGATGGATCCGCTCGTGCAGGTAAACGGCATACGCATCATCTTCGACTTTGACGGCCTGTCGATGTCGCACGTGGCGCAGGCGTCGCCCAAGCACGCGATGGTCAGCCTGCAGTGGATCCAGAAGTGCTGCCCGCTGCAGCTGAAGAGCATCCACATCGTCAACAACTCGATGCTGTTCAACGTCCTGTTCACCATCTTCAAGCCGTTCATCTCGAAGGAGCTGCGGGACAAAATGCACTTCCACAACCGCGACTACAGCGGGCTGACGAAATGCATCAGCGCCAAGTGTTTGCCGCCCGCGTACGGCGGCACGCTCGATGCGCCCGACTGCGAAGGTCAGCTGCTCGGGGACTTTATGCAGCTGTACGACAAGCACTACGAAGCGATGGACGCGTTCGGGTACGAGGAAAGCAATGCCAAGTGAAGCACCACCACCACCACCCATCACAATCACCTGCTGCAACAGTGCTGCCAATCTGTGATCTACGCCGCAAACGTTTCGTCTCTCGCCCGCCGTCGCACCACGGGTGAAGGCACCACCACCTACTCCAGCCCACTCCAGGGCACTCGTTCTGTCGCCTCTATCGTCTAGTTTTCCTAATGCGACCGGTGTGCTGCTCTTACATTGACCGACAGCGACCGACCGACCGACCGATCGGATCATATCAGCGATGCATTGGATCGCCCCAGAACGGTCGCGTTAGTGTAGTGTGTAAGCGATTAGGTAAGCTTTTTCGGGTAGTGGGACATCACGCTTGAGGGTTAATTGGTAAGGATTGCTAAGGAGAAAAAGCAACCAC---CAACG-GGCGGTTTGACACTGAAACGTGCTGCCACCGTTCGGCTGTCTTTTGCATTGGAGACATTATTTTTACTCACGGGCATACACATTAAAGTTCAAGTACCGTACCGGCAGTACCGCGCACTTGTGCAGTGC]
[+] EMBL BM642870 [CCGCCCACGCGTCCGCCCACGCGTCCGGGACGACGACTACACCGACCAGCGCTGGATACTGAAGGCCGAGCAGGAGCTGAACGAGACGGCCGAAAATAAGGCACGCTCGCTGGAGCAGCTGCGCGAGCTGCTGCGGGACGAGCCGAAGCTTACCGTGCCGCTGGACGATGAGAAGTTTCTGCTCAAGTTTCTGCGCCCGCTCGGCTACGATGTGCAGCGGGCGTTCGACTGCATCCGGCACACGTTCGCGATGAAGCGCACCTACGGCAAGGATTACTACGAGGGGCGCATCAAACCGTCGCACATACGGCACATCTACGATTCGGGCATGGTGAGCTTCCTGCCGCTGCGCGACGACGACGGCTGCGGCATATGCGTTACCCAGCTCGGACGTAAATGGAACACCTCCAAGGTTTCGATGTACGACGTGTTGGCCCTGTTCCGCATCAACATCGAAGCGTCGCTGATGGATCCGCTCGTGCAGGTAAACGGCATACGCATCATCTTCGACTTTGACGGCCTGTCGATGTCGCACGTGGCGCAGGCGTCGCCCAAGCACGCGATGGTCAGCCTGCAGTGGATCCAGAAGTGCTGCCCGCTGCAGCTGAAGAGCATCCACATCGTCAACAACTCGATGCTGTTCAACGTCCTGTTCACCATCTTCA ]
[+] EMBL BX614483 [ TCCGCATCAACATCGAAGCGTCGCTGATGGATCCGCTCGTGCAGGTAAACGGCATACGCATCATCTTCGACTTTGACGGCCTGTCGATGTCGCACGTGGCGCAGGCGTCGCCCAAGCACGCGATGGTCAGCCTGCAGTGGATCCAGAAGTGCTGCCCGCTGCAGCTGAAGAGCATCCACATCGTCAACAACTCGATGCTGTTCAACGTCCTGTTCACCATCTTCAAGCCGTTCATCTCGAAGGAGCTGCGGGACAAAATGCACTTCCACAACCGCGACTACAGCGGGCTGACGAAATGCATCAGCGCCAAGTGTTTGCCGCCCGCGTACGGCGGCACGCTCGATGCGCCCGACTGCGAAGGTCAGCTGCTCGGGGACTTTATGCAGCTGTACGACAAGCACTACGAAGCGATGGACGCGTTCGGGTACGAGGAAAGCAATGCCAAGTGAAGCACCAC ]
[+] EMBL BX612726 [ GACGAAATGCATCAGCGCCAAGTGTTTGCCGCCCGCGTACGGCGGCACGCTCGATGCGCCCGACTGCGAAGGTCAGCTGCTCGGGGACTTTATGCAGCTGTACGACAAGCACTACGAAGCGATGGACGCGTTCGGGTACGAGGAAAGCAATGCCAAGTGAAGCACCACCACCACCACCCATCACAATCACCTGCTGCAACAGTGCTGCCAATCTGTGATCTACGCCGCAAACGTTTCGTCTCTCGCCCGCCGTCGCACCACGGGTGAAGGCACCACCACCTACTCCAGCCCACTCCAGGGCACTCGTTCTGTCGCCTCTATCGTCTAGTTTTCCTAATGCGACCGGTGTGCTGCTCTTACATTGACCGACAGCGACCGACCGACCGACCGATCGGATCATATCAGCGATGCATTGGATCGCCCCAGAACGGTCGCGTTAGTGTAGTGTGTAAGCGATTAGGTAAGCTTTTTCGGGTAGTGGGACATCACGCTTGAGGGTTAATTGGTAAGGATTGCTAAGGAGAAAAAGCAACCAC CAACG GGCGGTTTGACACTGAAACGTGCTGCCACCGTTCGGCTGTCTTTTGCATTGGAGACATTATTTTTACTCACGGGCATAC ]
[+] EMBL BX620256 [ CCCGACTGCGAAGGTCAGCTGCTCGGGGACTTTATGCAGCTGTACGACAAGCACTACGAAGCGATGGACGCGTTCGGGTACGAGGAAAGCAATGNNAAGTG AG CCACCACCACTTATCACAATCACCTGCTGCAACAGTGCTGCCAATCTGTGATCTATGCCGCAAACGTTTCGACTCTCGCCCGCCGTCGCACCACGGGTGAAGGCACCACCACCTACTCCAGTCCACTCCAGGGCACTCGTTCTGTCGCCTCTATCGTCTAGTTTTCCTAATGCGACCGGTGTGCTGCTCTGACATTGACCGACAG CGACCGACCGACCGATCGGATCATATCAGCGATGCATTGGATCGCCCCAGAACGGTCGCCTTAGTGTAGTGTGTAAGCGATTAGGTAAGCTTTTTCGGGTAGTGGGACATCACGCTTGAGGGTTAATTGGTAAGGATTGCTA GAGAAAAAGCAACCACCAGCAACGCGGCGGTTTGACATTGAAACGTGCTGCCANCGTTCGGCTGTCTTTTGCATTGGAGACATTATTTTTACTCGCGGGCATACACATTAAAGTTCAAGTACCGTACCGGCAGTACCGCGCACTTGTGCAGTGC]
consensusID : consensus_6728#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 666 fasta sequence
[CCGAGCAGCCGGGAACGACGAACGACGTTGCTTGTGTTGCTGCCGTAGAGACGAGCTCTTGACCAAGTTGCGTAACGCTTTGCATCCCACTCAGTTGCTTTCCGTGTTTACACAGTGCGTGCGTGATCCGTTCTGTGTGCCGTGTGTCCGTGAGCATTCGTTGGTTCGTTGTACACCCTTCACCTCTACTGAGCCGG---TTTTTTCTGTTTTTTTGGGGGGAGTGTTATTTTGCCTAAGCAGTGTTGTGCGTGTTGGTCTTTGTGTTG--TTTTTTTCTTTCGGAAATAAAACCCTCAAACCGAG-------CGGCACCACTCCACGGGCTCCCCAAGGTCAGCCGGGCTCGCGCTCGATAGAGGTCCGCTTTTTCGGGGAGGTGGTAATTGGATAGGCGGTGTTGTGACGCGTCCCTGATACGCCATTAGTAGTGAGGCTTTTCGTTTGTTTTTGTTTCGAGTGATTTTCGAAAGTGAAAGCCCTTGAGCAATCCGTGCGCCTAAGTGACCGCTCAACATGTCGATCAAGTACAACGAAAAGAACTACCCGTACATCGATCTCGGGCGCGGGTACATCATCTACCTGCAGGACGACGACTACACCGACCAGCGCTGGATACTGAAGGCCGAGCAGGAGCTGAACGAGACGGCCGAAAATAAGGCACGCTCGCTGGA]
[+] EMBL BM617236 [CCGAGCAGCCGGGAACGACGAACGACGTTGCTTGTGTTGCTGCCGTAGAGACGAGCTCTTGACCAAGTTGCGTAACGCTTTGCATCCCACTCAGTTGCTTTCCGTGTTTACACAGTGCGTGCGTGATCCGTTCTGTGTGCCGTGTGTCCGTGAGCATTCGTTGGTTCGTTGTACACCCTTCACCTCTACTGAGCCGG TTTTTTCTGTTTTTTTGGGGGGAGTGTTATTTTGCCTAAGCAGTGTTGTGCGTGTTGGTCTTTGTGTTG TTTTTTTCTTTCGGAAATAAAACCCTCAAACCGAG CGGCACCACTCCACGGGCTCCCCAAGGTCAGCCGGGCTCGCGCTCGATAGAGGTCCGCTTTTTCGGGGAGGTGGTAATTGGATAGGCGGTGTTGTGACGCGTCCCTGATACGCCATTAGTAGTGAGGCTTTTCGTTTGTTTTTGTTTCGAGTGATTTTCGAAAGTGAAAGCCCTTGAGCAATCCGTGCGCCTAAGTGACCGCTCAACATGTCGATCAAGTACAACGAAAAGAACTACCCGTACATCGATCTCGGGCGCGGGTACATCATCTACCTGCAGGACGACGACTACACCGACCAGCGCTGGATACTGAAGGCCGAGCAG ]
[+] EMBL BM587862 [ ccgCGACGGTGCTTGTGTTGCTGCCGTAGAGACGAGCTCTTGACCAAGTTGCGTAACGCTTTGCATCCCACTCAGTCGCTTTCCGTGTTTACACAGTGCGTGCGTGATCCGTTCTGAGTGCCGTGTGTCCGTGAGCATTCGTTGGTTCGTTGTACACCCTTCACCTCTACTGAGCCGGTTTTTTTTTTTGTTTTTTTGGGGGGAGTGTTATTTTGCCTAAGCAGTGTTGTGCGTGTTGGTCTTTGTGTTGTTTTTTTTTCTTTCGGAAATAAAACCCTCAAACCGAGCGAGACTCGGCACCACTCCACGGGCTCCCCAAGGTCAGCCGGGCTCGCGCTCGATAGAGGTCCGCTTTTTCGGGGAGGTGGTAATTGGATAGGCGGTGCAGTGACGCGTCCCTGATACGCCATTAGTAGTGAGACTTTTCGTTTGTTTTTGTTTCGAGTGATTTTCGAAAGTGAAAGCCCTTGAGCAATCCGTGCGCCTAAGTGACCGCTCAGCATGTCGATCAAGTACAACGACAAGAACTACCCGTACATCGATCTCGGGCGCGGGTACATCATCTACCTGCAGGACGACGACTACACCGACCAGCGCTGGATACTGAAGGCCGAGCAGGAGCTGAACGAGACGGCCGAAAATAAGGCACGCTCGCTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6728#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGACGACGACTACACCGACCAGCGCTGGATACT 60
consensus_6728#1 ------------------------------------------------------------
consensus_6728#0 GAAGGCCGAGCAGGAGCTGAACGAGACGGCCGAAAATAAGGCACGCTCGCTGGAGCAGCT 120
consensus_6728#1 ------------------------------------------------------------
consensus_6728#0 GCGCGAGCTGCTGCGGGACGA--GCCGAAGCTTACCGTGCCGCTGG-ACGATGAGAAGTT 177
consensus_6728#1 --CCGAGCAGCCG-GGAACGACGAACGACGTTGCTTGTGTTGCTGCCGTAGAGACGAGCT 57
***** ** * ** **** *** * * *** **** ** ** *
consensus_6728#0 TCTGCTCAAGTTTCT--GCGCC---CGCTCGGCTACGATGTGCAGCGGGCGTTCG-ACTG 231
consensus_6728#1 CTTGACCAAGTTGCGTAACGCTTTGCATCCCACTCAGTTGCTTTCCGTGTTTACACAGTG 117
** ****** * *** * * ** * ** ** * * * * **
consensus_6728#0 CATCCGGCACACGTTCGCGATGAAGCGCACCTACG-GCAAGGATTACTACGAGGGGCGCA 290
consensus_6728#1 CGTGCGTGATCCGTTCTGTGTGCCGTGTGTCCGTGAGCATTCGTTGGTTCGTTGTACACC 177
* * ** * ***** ** * * * * *** ** * ** * * *
consensus_6728#0 TCAAACCGTCGCACATACGGCACATCTACGATTCGGGCATGGTGAGCTTCCTGCCGC-TG 349
consensus_6728#1 CTTCACCTCTACTGAGCCGGT--TTTTTCTGTTTTTTTGGGGGGAGTGTTATTTTGCCTA 235
*** * * *** * * * ** ** *** * * ** *
consensus_6728#0 CGCGACGACGACGGCTGCGGCATATGCGTTACCCAGCTCGGACGTAAATGGAACACCTCC 409
consensus_6728#1 AGCAGTGTTGTGCGTGTTGGTCTTTGTGTTGTTTTTTTCTTTCGGAAATAAAAC-CCTCA 294
** * * * ** * ** *** ** ** **** *** ****
consensus_6728#0 AAGGTTTCGATGTACGACGTGTTGGCCCTGTTCCGCATCAACATCGAAGCGTCGCTGATG 469
consensus_6728#1 AA--CCGAGCGGCACCACTCCACGGGCTC-CCCAAGGTCAGC-CGGGCTCGCGCTCGATA 350
** * * ** ** ** * * *** * * ** ***
consensus_6728#0 GA--TCCGCTCGTGCAGGTAAACGGCATACGCATCATCTTCGACTTTGACGGCCTGTCGA 527
consensus_6728#1 GAGGTCCGCTTTTTCGGGGAGGTGGTAATTGGATAGGCGGTG-TTGTGACGCGTCCCTGA 409
** ****** * * ** * ** * * ** * * * ***** **
consensus_6728#0 TGTCGCAC--GTGGCGCAGGCGT-CGCCCAAGCACGCGATGGTCAGCCTGC---AGTGGA 581
consensus_6728#1 TACGCCATTAGTAGTGAGGCTTTTCGTTTGTTTTTGTTTCGAGTGATTTTCGAAAGTGAA 469
* ** ** * * * * ** * * * * **** *
consensus_6728#0 TCCAGAAGTGCTGCCCGCTGCAGCTGAAGAGCATCCACATCGTCAACAACTCGATGCTGT 641
consensus_6728#1 AGCCCTTGAGCAATCCG-TGCGCCTAA---GTGACCGC----TCAACATGTCGATCAAGT 521
* * ** *** *** ** * * ** * ****** ***** **
consensus_6728#0 TCAACGTCCTGTTCACCATCTTCAAGCCGTTCATCTCGAAGGAGCTGCGGGACAAAATGC 701
consensus_6728#1 ACAACGAAAAGA--ACTACCCGTACATCG---ATCTCGGGCGCG----GGTACATCATCT 572
***** * ** * * * ** ****** * * ** *** **
consensus_6728#0 ACTTCCACAACCGCGACTACAGCGGGCTG-ACGAAATGCATCAGCGCCAAGTGTTTGCCG 760
consensus_6728#1 ACCTGCAGGACGACGACTACACCGACCAGCGCTGGATAC-TGAAGGCCGAGCAGGAGCTG 631
** * ** ** ******** ** * * * ** * * * *** ** ** *
consensus_6728#0 CCCGCGTACGGCGGCACGCTCGATGCGCCCGACTGCGAAGGTCAGCTGCTCGGGGACTTT 820
consensus_6728#1 AACGAG-ACGGCCGAAAATAAGGCACGCTCG-CTGGA----------------------- 666
** * ***** * * * *** ** ***
consensus_6728#0 ATGCAGCTGTACGACAAGCACTACGAAGCGATGGACGCGTTCGGGTACGAGGAAAGCAAT 880
consensus_6728#1 ------------------------------------------------------------
consensus_6728#0 GCCAAGTGAAGCACCACCACCACCACCCATCACAATCACCTGCTGCAACAGTGCTGCCAA 940
consensus_6728#1 ------------------------------------------------------------
consensus_6728#0 TCTGTGATCTACGCCGCAAACGTTTCGTCTCTCGCCCGCCGTCGCACCACGGGTGAAGGC 1000
consensus_6728#1 ------------------------------------------------------------
consensus_6728#0 ACCACCACCTACTCCAGCCCACTCCAGGGCACTCGTTCTGTCGCCTCTATCGTCTAGTTT 1060
consensus_6728#1 ------------------------------------------------------------
consensus_6728#0 TCCTAATGCGACCGGTGTGCTGCTCTTACATTGACCGACAGCGACCGACCGACCGACCGA 1120
consensus_6728#1 ------------------------------------------------------------
consensus_6728#0 TCGGATCATATCAGCGATGCATTGGATCGCCCCAGAACGGTCGCGTTAGTGTAGTGTGTA 1180
consensus_6728#1 ------------------------------------------------------------
consensus_6728#0 AGCGATTAGGTAAGCTTTTTCGGGTAGTGGGACATCACGCTTGAGGGTTAATTGGTAAGG 1240
consensus_6728#1 ------------------------------------------------------------
consensus_6728#0 ATTGCTAAGGAGAAAAAGCAACCACCAACGGGCGGTTTGACACTGAAACGTGCTGCCACC 1300
consensus_6728#1 ------------------------------------------------------------
consensus_6728#0 GTTCGGCTGTCTTTTGCATTGGAGACATTATTTTTACTCACGGGCATACACATTAAAGTT 1360
consensus_6728#1 ------------------------------------------------------------
consensus_6728#0 CAAGTACCGTACCGGCAGTACCGCGCACTTGTGCAGTGC 1399
consensus_6728#1 ---------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||