cluster # 6734

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Anopheles gambiae
cluster # 6734 cluster # 6734 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6734#0 length = 1107 sequences # 5

consensus_6734#1 length = 106 sequences # 1

consensusID : consensus_6734#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1107
fasta sequence

                              [GAAAACAATGATATAGGGCATATATTTATAAGTGTTTTGTTTTGTTTTTTCTTCTTTTTAACGTTTACCTATAATAGCATGTCGCTGTTTTGTTGTTTGCTTGTGTACAAGAGTGTGTGTTAAACATTTTGCTGTATTTGTTGCTTTCGTTTGTTTGTGTGTTTTGGGCTGTTAGTTTCGCTTGCGTTTTGCTGGCTGCAGGCATGCTGTTATGTCTGTTTTTGTATGTGTTTGTTTGTTTGTTGTTTCTGTGTCGCTTTCTTTGTGTAGTTTTCAGCATGGAATTGCTCACTGCGCCTGCGGATCACATTGCAACAGCCGCACGATCGACGGATCACTCTTCGCGCCCTCGATGAACTCCTCCAGGCTCAGCTTGCCGTCCTTGTTGCGATCCATCTGGCGGAAGATTTTGTCCGTCCGCTTTTCCGGCGTGCTTTCGTCCTCGGGCATCTTCATCACCGAGCCGACCATTTTGTAGATTGCGGTAACAATTTCCAGCATTTCCTGTCGGGAGATGTATCCGTTACCGTCCAGATCGTACATCGAGAACGCCCATTTCAGCTTCTGCTCTAGCTTGCCGCGCGAGGTAACGCTCAGTGCGCACAGGAACTCCCGGAAGTCGATCGTACCGTCACCGTTCGCGTCGAACGTTCGAAACACATGCTCGGCGAACTTGCTGGCGTCGCCGTAGGGGAAGAAGTTGCCATAAATTTTCTTAAACTCCTCCACCGACAGATGACCGCTCGGGCAGTCTTTCAGGAAGCCTTTGTACCATTCCTGTATCTCAGCATCTGAGAATTCTGTGTTCTGCTTCAGGTCCTCCAGCACCTCCGGCTTCAGTTTGCTGTTTTGCTTGCCCATTCTGGCTGTGTTTTTGTGTGTTTGAAGTCTGGTGGGGGGGGAAGGGATGGGGGAGTGCTTCTCGGTGTGTTGAACACTCTCCAGAGACTCCAGAGAGGGCTGGTTGGCTGGTAATGGCTCGGAGCTTGTGACGAGATGCCTTCTCCGTTTGTTACGCGCGTTCCGGGATGAACGAACGACGAGTGCCGCTGCTGCTTACTTCACA--CTGCGTCGGGGGTTTTCAGTACACACTCTCACTCTCTCCGG]

[+] EMBL CNS09PL6             [GAAAACAATGATATAGGGCATATATTTATAAGTGTTTTGTTTTGTTTTTTCTTCTTTTTAACGTTTACCTATAATAGCATGTCGCTGTTTTGTTGTTTGCTTGTGTACAAGAGTGTGTGTTAAACATTTTGCTGTATTTGTTGCTTTCGTTTGTTTGTGTGTTTTGGGCTGTTAGTTTCGCTTGCGTTTTGCTGGCTGCAGGCATGCTGTTATGTCTGTTTTTGTATGTGTTTGTTTGTTTGTTGTTTCTGTGTCGCTTTCTTTGTGTAGTTTTCAGCATGGAATTGCTCACTGCGCCTGCGGATCACATTGCAACAGCCGCACGATCGACGGATCACTCTTCGCGCCCTCGATGAACTCCTCCAGGCTCAGCTTGCCGTCCTTGTTGCGATCCATCTGGCGGAAGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CNS08SP1             [                                   aTTGTTTTGTTTTTTCTTCTTTTTAACGTTTACCTATAATAGCATGTCGCTGTTTTGTTGTTTGCTTGTGTACAAGAGTGTGTGTTAAACATTTTGCTGTATTTGTTGCTTTCGTTTGTTTGTGTGTTTTGGGCTGTTAGTTTCGCTTGCGTTTTGCTGGCTGCAGGCATGCTGTTATGTCTGTTTTTGTATGTGTTTGTTTGTTTGTTGTTTCTGTGTCGCTTTCTTTGTGTAGTTTTCAGCATGGAATTGCTCACTGCGCCTGCGGATCACATTGCAACAGCCGCACGATCGACGGATCACTCTTCGCGCCCTCGATGAACTCCTCCAGGCTCAGCTTGCCGTCCTTGTTGCGATCCATCTGGCGGAAGATTTTGTCCGTCCGCTTTTCCGGCGTGCTTTCGTCCTCGGGCATCTTCATCACCGAGCCGACCATTTTGTAGATTGCGGTAACAATTTCCAGCATTTCCTGTCGGGAGATGTATCCGTTACCGTCCAGATCGTACATCGAGAACGCCCATTTCAGCTTCTGCTCTAGCTTGCCGCGCGAGGTAACGCTCAGTGCGCACAGGAACTCCCGGAAGTCGATCGTACCGTCACCGTTCGCGTCGAACGTTCGAAACACATGCTCGGCGAACTTGCTGGCGTCGCCGTA GGGAAGAAGTTGCCATAAATTTTCTTAAACTCCTCCACCGACAGATGACCGCTTGGGCAGTCTTTCAGGAAGCCTTTGTACCATTCCTGTATCTCAGCATCTGAGAATTCTGTGTTCTGCTTCAGGTCCTCCAGCACCTCCGGCTTCAGTTTGCTGTTTTGCTTGCCCATTCTGGCTGTGTTTTTGTGTGTTTGAAGTCTGGTGGGGGGGGAAGGGATGGGGGAGTTCTTCTCGGTGTGTTG ACACTCTCCAGAGACTCCAGAGAGGGCTGGTTGGCT                                                                                                                                           ]
[+] EMBL CNS08M72             [                                                                                                  GCTTGTGTACAAGAGTGTGTGTTAAACATTTTGCTGTATTTGTTGCTTTAGTTTGTTTGTGTGTTTTGGGCTGTTAGTTTCGCTTGCGTTTTGCTGGCTGCAGGCATGCTGTTATGTCTGTTTTTGTATGTGTTTGTTTGTTTGTTGTTTCTGTGTCGCTTTCTTTGTGTAGTTTTCAGCATGGAATTGCTCACTGCGCCTGCGGATCACATTGCAACAGCCGCACGATCGACGGATCACTCTTCGCGCCCTCGATGAACTCCTCCAGGCTCAGCTTGCCGTCCTTGTTGCGATCCATCTGGCGGAAGATTTTGTCCGTCCGCTTTTCCGGCGTGCTTTCGTCCTCGGGCATCTTCATCACCGAGCCGACCATTTTGTAGATTGCGGTAACAATTTCCAGCATTTCCTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL BM648776             [                                                                                                                                                                                                                                                                                                                                                                                                                                                GCTTTCGTCCTCGGGCATCTTCATCACCGAGCCGACCATTTTGTAGATTGCGGTAACAATTTCCAGCATTTCCTGTCGGGAGATGTATCCGTTACCGTCCAGATCGTACATCGAGAACGCCCATTTCAGCTTCTGCTCTAGCTTGCCGCGCGAGGTAACGCTCAGTGCGCACAGGAACTCCCGGAAGTCGATCGTACCGTCACCGTTCGCGTCGAACGTTCGAAACACATGCTCGGCGAACTTGCTGGCGTCGCCGTAGGGGAAGAAGTTGCCATAAATTTTCTTAAACTCCTCCACCGACAGATGACCGCTCGGGCAGTCTTTCAGGAAGCCTTTGTACCATTCCTGTATCTCAGCATCTGAGAATTCTGTGTTCTGCTTCAGGTCCTCCAGCACCTCCGGCTTCAGTTTGCTGTTTTGCTTGCCCATTCTGGCTGTGTTTTTGTGTGTTTGAAATCTGGTGGGGGGGGAAGGGATGGGGGAGTGCTTCTCGGTGTGTTGAACACTCTCCAGAGACTCCAGAGAGGGCTGGTTGGCTGGTAATGGCTCGGAGCTTGTGACGAGATGCCTTCTCCGTTTGTTACGCGCGTTCCGGGATGAACGAACGACGAGTGCCGCTGCTGCTTACTTCACA  CTGCGTCGGGGGTTTTCAGTACACACTCTCACTCTCTCCGG]
[-] EMBL BX620836             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCTTCATCACCGAGCCGACCATTTTGTAGATTGCGGTAACAATTTCCAGCATTTCCTGTCGGGAGATGTATCCGTTACCGTCCAGATCGTACATCGAAAACGCCCATTTCAGCTTCTGCTCTAGCTTGCCGCGCGAGGTAACGCTCAGTGCGCACAGGAACTCCCGGAAGTCGATCGTACCGTCACCGTTCGCGTCGAACGTTCGAAACACATGCTCGGCGAACTTGCTGGCGTCGCCGTAGGGGAAGAAGTTGCCATAAATTTTCTTAAACTCCTCCACCGACAGATGACCGCTCGGGCAGTCTTTCAGGAAGCCTTTGTACCATTCCTGTATCTCAGCATCTGAGAATTCTGTGTTCTGCTTCAGGTCCTCCAGCACCTCCGGCTTCAGTTTGCTGTTTTGCTTGCCCATTCTGGCTGTGTTTTTGTGTGCTTGAAGACTGGTGGGGGGGGGAGGGATGGGGGAGTGCTTCTCGGTGTGTTGAACACTCTCCAGAGACTCCAGAGAGGGCTGGTTGGCTGGTAATGGCTCGGAGCTTGTGTCGAGCTGCCTTCTCCGTTTGTTACGCGCGTTCCGGGATGAACTAACGACGAGTGCCGCTGCTGCTTACTTCACAGCCTGCaa                                   ]




>consensus_6734#0
GAAAACAATGATATAGGGCATATATTTATAAGTGTTTTGTTTTGTTTTTTCTTCTTTTTA
ACGTTTACCTATAATAGCATGTCGCTGTTTTGTTGTTTGCTTGTGTACAAGAGTGTGTGT
TAAACATTTTGCTGTATTTGTTGCTTTCGTTTGTTTGTGTGTTTTGGGCTGTTAGTTTCG
CTTGCGTTTTGCTGGCTGCAGGCATGCTGTTATGTCTGTTTTTGTATGTGTTTGTTTGTT
TGTTGTTTCTGTGTCGCTTTCTTTGTGTAGTTTTCAGCATGGAATTGCTCACTGCGCCTG
CGGATCACATTGCAACAGCCGCACGATCGACGGATCACTCTTCGCGCCCTCGATGAACTC
CTCCAGGCTCAGCTTGCCGTCCTTGTTGCGATCCATCTGGCGGAAGATTTTGTCCGTCCG
CTTTTCCGGCGTGCTTTCGTCCTCGGGCATCTTCATCACCGAGCCGACCATTTTGTAGAT
TGCGGTAACAATTTCCAGCATTTCCTGTCGGGAGATGTATCCGTTACCGTCCAGATCGTA
CATCGAGAACGCCCATTTCAGCTTCTGCTCTAGCTTGCCGCGCGAGGTAACGCTCAGTGC
GCACAGGAACTCCCGGAAGTCGATCGTACCGTCACCGTTCGCGTCGAACGTTCGAAACAC
ATGCTCGGCGAACTTGCTGGCGTCGCCGTAGGGGAAGAAGTTGCCATAAATTTTCTTAAA
CTCCTCCACCGACAGATGACCGCTCGGGCAGTCTTTCAGGAAGCCTTTGTACCATTCCTG
TATCTCAGCATCTGAGAATTCTGTGTTCTGCTTCAGGTCCTCCAGCACCTCCGGCTTCAG
TTTGCTGTTTTGCTTGCCCATTCTGGCTGTGTTTTTGTGTGTTTGAAGTCTGGTGGGGGG
GGAAGGGATGGGGGAGTGCTTCTCGGTGTGTTGAACACTCTCCAGAGACTCCAGAGAGGG
CTGGTTGGCTGGTAATGGCTCGGAGCTTGTGACGAGATGCCTTCTCCGTTTGTTACGCGC
GTTCCGGGATGAACGAACGACGAGTGCCGCTGCTGCTTACTTCACACTGCGTCGGGGGTT
TTCAGTACACACTCTCACTCTCTCCGG

consensusID : consensus_6734#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 106
fasta sequence

                              [CGCCGCGACCAGGTCAAGCGCCCGAACGCGAAGAACGACAGGGCCGATGAACGTGCCGCCACCACGTACCTGCTGGTCGGTGGAGCCGCCGTCTCGACGGGGTACG]

[+] EMBL BX613190             [CGCCGCGACCAGGTCAAGCGCCCGAACGCGAAGAACGACAGGGCCGATGAACGTGCCGCCACCACGTACCTGCTGGTCGGTGGAGCCGCCGTCTCGACGGGGTACG]




>consensus_6734#1
CGCCGCGACCAGGTCAAGCGCCCGAACGCGAAGAACGACAGGGCCGATGAACGTGCCGCC
ACCACGTACCTGCTGGTCGGTGGAGCCGCCGTCTCGACGGGGTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6734#0      GAAAACAATGATATAGGGCATATATTTATAAGTGTTTTGTTTTGTTTTTTCTTCTTTTTA 60
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      ACGTTTACCTATAATAGCATGTCGCTGTTTTGTTGTTTGCTTGTGTACAAGAGTGTGTGT 120
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      TAAACATTTTGCTGTATTTGTTGCTTTCGTTTGTTTGTGTGTTTTGGGCTGTTAGTTTCG 180
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      CTTGCGTTTTGCTGGCTGCAGGCATGCTGTTATGTCTGTTTTTGTATGTGTTTGTTTGTT 240
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      TGTTGTTTCTGTGTCGCTTTCTTTGTGTAGTTTTCAGCATGGAATTGCTCACTGCGCCTG 300
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      CGGATCACATTGCAACAGCCGCACGATCGACGGATCACTCTTCGCGCCCTCGATGAACTC 360
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      CTCCAGGCTCAGCTTGCCGTCCTTGTTGCGATCCATCTGGCGGAAGATTTTGTCCGTCCG 420
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      CTTTTCCGGCGTGCTTTCGTCCTCGGGCATCTTCATCACCGAGCCGACCATTTTGTAGAT 480
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      TGCGGTAACAATTTCCAGCATTTCCTGTCGGGAGATGTATCCGTTACCGTCCAGATCGTA 540
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      CATCGAGAACGCCCATTTCAGCTTCTGCTCTAGCTTGCCGCG-CGAGGTAACGC-TCAGT 598
consensus_6734#1      -----------------------------------CGCCGCGACCAGGTCAAGCGCCCGA 25
                                                          ****** * **** * **  * * 

consensus_6734#0      GCGCACAGGAACTCCCGGAAGTCGATCGTACCGTCACC--GTTCGCGTCGAACGTTCGAA 656
consensus_6734#1      ACGCGAAGAACGACAGGGCCGATGAACGTGCCGCCACCACGTACCTGCTGGTCGGTGGAG 85
                       ***  ** *   *  **  *  ** *** *** ****  ** *  *  *  ** * ** 

consensus_6734#0      ACACATGCTCGGCGAACTTGCTGGCGTCGCCGTAGGGGAAGAAGTTGCCATAAATTTTCT 716
consensus_6734#1      CCGCCGTCTCGACGGGGTACG--------------------------------------- 106
                       * *   **** **   *                                          

consensus_6734#0      TAAACTCCTCCACCGACAGATGACCGCTCGGGCAGTCTTTCAGGAAGCCTTTGTACCATT 776
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      CCTGTATCTCAGCATCTGAGAATTCTGTGTTCTGCTTCAGGTCCTCCAGCACCTCCGGCT 836
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      TCAGTTTGCTGTTTTGCTTGCCCATTCTGGCTGTGTTTTTGTGTGTTTGAAGTCTGGTGG 896
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      GGGGGGAAGGGATGGGGGAGTGCTTCTCGGTGTGTTGAACACTCTCCAGAGACTCCAGAG 956
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      AGGGCTGGTTGGCTGGTAATGGCTCGGAGCTTGTGACGAGATGCCTTCTCCGTTTGTTAC 1016
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      GCGCGTTCCGGGATGAACGAACGACGAGTGCCGCTGCTGCTTACTTCACACTGCGTCGGG 1076
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      GGTTTTCAGTACACACTCTCACTCTCTCCGG 1107
consensus_6734#1      -------------------------------