These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 745 fasta sequence [CCGGTGACGTGGATGTTACCTTATATTATATTTTCGGTTTGCCGGCAAAACACCTGTAGTGATTAATTCTAGAGAATGGCCCTAATGACGATGATTGCACGCTTTGTAGACGGCCTTCCGCTCGTGGGAACTATGCAGGAAGATGAGCAGTCCGGCCGAAGCATATTGGAGTATCAAAATCAAGCTAAATTGCTGTTTCGAAAACTGGGACCCAACTCACCAACCCGATGCAGCATAGAAACCGGGCCTTATTTGTTTCATTATTTGATCGAACATGATGTTTGCTATTTAGTTATGTGCGACAAGGTGTTTTCGAAACGAATCGCTTTCACATATCTGGAAGATATCGCCCAGGAATTTCACAGTAACTATGGAAGGAGAGTAAATACAGTGACTAGACCGTACGCTTTTATTGAATTTGATATTTATATCCAGAAAGCCCGGAAAAACCTAACAGATCGTAGGAGAAATATAAATGCTATAAATAATCAGTTACAAGATGTGCAAAGGATTATGGTACAAAATATTGATGATG-TTTTGCAACGCGGGACTGTTCTATCTGAACTGGATACCAAAACAC--AAAATTTATCGATGCTCTCTCAGAAGTACAAGAAGGATGCTTCATATTTGAACCGCAAATCGCTGTACGT-CAA-GGGAGCAGTAGCTGGAATAATTTTAATTTTGTTTGTGGTATATTTTTGGGTCATTTGATAGTAATTTATATGTCATTCAAGCTATGTGTGAT] [+] EMBL BX628365 [CCGGTGACGTGGATGTTACCTTATATTATATTTTCGGTTTGAGTGCAAAACACCTGTAGTGATTAATTCTAGAGAATGGCCCTAATGACGATGATTGCACGCTTTGTAGACGGCCTTCCGCTCGTGGGAACTATGCAGGAAGATGAGCAGTCCGGCCGAAGCATATTGGAGTATCAAAATCAAGCTAAATTGCTGTTTCGAAAACTGGGACCCAACTCACCAACCCGATGCAGCATAGAAACCGGGCCTTATTTGTTTCATTATTTGATCGAACATGATGTTTGCTATTTAGTTATGTGCGACAAGGTGTTTTCGAAACGAATCGCTTTCACATATCTGGAAGATATCGCCCAGGAATTTCACAGTAACTATGGAAGGAGAGTAAATACAGTGACTAGACCGTACGCTTTTATTGAATTTGATATTTATATCCAGAAAGCCCGGAAAAACCTAACAGATCGTAGGAGAA ATAAATGCTATAAATAATCAGTTACAAGATGTGCAAAGGATTATGGTACAAAATATTGATGATG TTTTGCAACGCGGGACTGTTCTATCTGAACTGGATACCAAAACAC AAAATTTATCGATGCTCTCTCAGAAGTACAAGAAGGATGCTTCATATTTGAACCGCAAATCGCTGTACGT CAA GGGAGCAGTAGCTGGAATAATTTTA ] [+] EMBL BM631734 [ CCGGCAAAACACCTGTAGTGATTAATTCTAGAGAATGGCCCTAATGACGATGATTGCACGCTTTGTAGACGGCCTTCCGCTCGTGGGAACTATGCAGGAAGATGAGCAGTCCGGCCGAAGCATATTGGAGTATCAAAATCAAGCTAAATTGCTGTTTCGAAAACTGGGACCCAACTCACCAACCCGATGCAGCATAGAAACCGGGCCTTATTTGTTTCATTATTTGATCGAACATGATGTTTGCTATTTAGTTATGTGCGACAAGGTGTTTTCGAAACGAATCGCTTTCACATATCTGGAAGATATCGCCCAGGAATTTCACAGTAACTATGGAAGGAGAGTAAATACAGTGACTAGACCGTACGCTTTTATTGAATTTGATATTTATATCCAGAAAGCCCGGAAAAACCTAACAGATCGTAGGAGAAATATAAATGCTATAAATAATCAGTTACAAGATGTGCAAAGGATTATGGTACAAAATATTGATGATG TTTTGCAACGCGGGACTGTTCTATCTGAACTGGATACCAAAACAC AAAATTTATCGATGCTCTCTCAGAAGTACAAGAAGGATGCTTCATATTTGAACCGCAAATCGCTGTACGT CAA GGGAGCAGTAGCTGGAATAATTTTAATTTTGTTTGTGGTATATTTTTGGGTCATTTGATAGTAATTTATATGTCATTCAAG ] [+] EMBL BM604049 [ CCGGCAAAACACCTGTAGTGATTAATTCTAGAGAATGGCCCTAATGACGATGATTGCACGCTTTGTAGACGGCCTTCCGCTCGTGGGAACTATGCAGGAAGATGAGCAGTCCGGCCGAAGCATATTGGAGTATCAAAATCAAGCTAAATTGCTGTTTCGAAAACTGGGACCCAACTCACCAACCCGATGCAGCATAGAAACCGGGCCTTATTTGTTTCATTATTTGATCGAACATGATGTTTGCTATTTAGTTATGTGCGACAAGGTGTTTTCGAAACGAATCGCTTTCACATATCTGGAAGATATCGCCCAGGAATTTCACAGTAACTATGGAAGGAGAGTAAATACAGTGACTAGACCGTACGCTTTTATTGAATTTGATATTTATATCCAGAAAGCCCGGAAAAACCTAACAGATCGTAGGAGAAATATAA ] [+] EMBL AL693458 [ AACACCTGTAGTGATTAATTCTAGAGAATGGCCCTCATGACGATGATTGCACGCTTTGTAGATGGCCTTCCGCTCGTGGGAACTATGCAGGAAGATGAGCAGTCCGGCCGAAGCATATTGGAGTATCAAAATCAAGCTAAATTGCTGTTTCGAAAACTGGGACCCAACTCACCAACCCGATGCAGCATAGAAACCGGGCCTTATTTGTTTCATTATTTGATCGAACATGATGTTTGCTATTTAGTTATGTGCGACAAGGTGTTTTCGAAACGAATCGCTTTCACATATCTGGAAGATATCGCCCAGGAATTTCACAGTAACTATGGAAGGAGAGTAAATACAGTGACTAGACCGTACGCTTTTATTGAA TTGATATTTATATCCAGAAAGCCCGGAAAAACCTAACAGATCGTAGGAGAAATATAAATGCTATAAATAATCAGTTACAAGATGTGCAAAGGATTATGGTACAAAATATTGATGATGTTTTTGCAACGCGGGACTGTTCTATCTGAACTGGATACCAAAACACCAAAAATTTATCGATGCTCTCTCAGAAGTACAAGAAGGATGCTTCATATTTGAACCGCAAATCGCTGTACGTACAAGGGGAGCAGTAGCTGGAATAATTTTAATAAGGAAGGT CATA TTGGGTCATTGGATAGTAA TATATGTCA TCAAGCTATGTGTGAT] [+] EMBL BM633302 [ AACACCTGTAGTGATTAATTCTAGAGAATGGCCCTAATGACGATGATTGCACGCTTTGTAGACGGCCTTCCGCTCGTGGGAACTATGCAGGAAGATGAGCAGTCCGGCCGAAGCATATTGGAGTATCAAAATCAAGCTAAATTGCTGTTTCGAAAACTGGGACCCAACTCACCAACCCGATGCAGCATAGAAACCGGGCCTTATTTGTTTCATTATTTGATCGAACATGATGTTTGCTATTTAGTTATGTGCGACAAGGTGTTTTCGAAACGAATCGCTTTCACATATCTGGAAGATATCGCCCAGGAATTTCACAGTAACTATGGAAGGAGAGTAAATACAGTGACTAGACCGTACGCTTTTATTGAATTTGATATTTATATCCAGAAAGCCCGGAAAAACCTAACAGATCGTAGGAGAAATATAAATGCTATAAATAATCAGTTACAAGATGTGCAAAGGATTATGGTACAAAATATTGATGATG TTTTGCAACGCGGGACTGTTCTATCTGAACTGGATACCAAAACAC AAAATTTATCGATGCTCTCTCAGAAGTACAAGAAGGATGCTTCATATTTGAACCGCAAATCGCTGTACGT CAA GGGAGCAGTAGCTGGAATAATTTTAATTTT ] consensusID : consensus_6735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [AACACCTGTAGTGATTAATTCTAGAGAATGGCCCTCATGACGATGATTGCACGCTTTGTAGATGGCCTTCCGCTCGTGGGAACTATGCAGGAAGATGAGCAGTCCGGCCGAAGCATATTGGAGTATCAAAATCAAGCTAAATTGCTGTTTCGAAAACTGGGACCCAACTCACCAACCCGATGCAGCATAGAAACCGGGCCTTATTTGTTTCATTATGTGCGACAAGGTGTTTTCGAAACGAATCGCTTTCACATATCTGGAAGATATCGCCCAGGAATTTCACAGTAACTATGGAAGGAGAGTAAATACAGTGACTAGACCGTACGCTTTTATTGAATTTGATATTTATATCCAGAAAGCCCGGAAAAACCTAACAGATCGTAGGAGAAATATAAATGCTATAAATAATCAGTTACAAGATGTGCAAAGGATTATGGTACAAAATATTGATGATGTTTTGCAACGCGGGACTGTTCTATCTGAACTGGATACCAAAACACAAAATTTATCGATGCTCTCTCAGAAGTACAAGAAGGATGCTTCATATTTGAACCGCAAATCGCTGTACGTCANGGAG] [+] EMBL BX626179 [AACACCTGTAGTGATTAATTCTAGAGAATGGCCCTCATGACGATGATTGCACGCTTTGTAGATGGCCTTCCGCTCGTGGGAACTATGCAGGAAGATGAGCAGTCCGGCCGAAGCATATTGGAGTATCAAAATCAAGCTAAATTGCTGTTTCGAAAACTGGGACCCAACTCACCAACCCGATGCAGCATAGAAACCGGGCCTTATTTGTTTCATTATGTGCGACAAGGTGTTTTCGAAACGAATCGCTTTCACATATCTGGAAGATATCGCCCAGGAATTTCACAGTAACTATGGAAGGAGAGTAAATACAGTGACTAGACCGTACGCTTTTATTGAATTTGATATTTATATCCAGAAAGCCCGGAAAAACCTAACAGATCGTAGGAGAAATATAAATGCTATAAATAATCAGTTACAAGATGTGCAAAGGATTATGGTACAAAATATTGATGATGTTTTGCAACGCGGGACTGTTCTATCTGAACTGGATACCAAAACACAAAATTTATCGATGCTCTCTCAGAAGTACAAGAAGGATGCTTCATATTTGAACCGCAAATCGCTGTACGTCANGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6735#0 CCGGTGACGTGGATGTTACCTTATATTATATTTTCGGTTTGCCGGCAAAACACCTGTAGT 60 consensus_6735#1 ------------------------------------------------AACACCTGTAGT 12 ************ consensus_6735#0 GATTAATTCTAGAGAATGGCCCTAATGACGATGATTGCACGCTTTGTAGACGGCCTTCCG 120 consensus_6735#1 GATTAATTCTAGAGAATGGCCCTCATGACGATGATTGCACGCTTTGTAGATGGCCTTCCG 72 *********************** ************************** ********* consensus_6735#0 CTCGTGGGAACTATGCAGGAAGATGAGCAGTCCGGCCGAAGCATATTGGAGTATCAAAAT 180 consensus_6735#1 CTCGTGGGAACTATGCAGGAAGATGAGCAGTCCGGCCGAAGCATATTGGAGTATCAAAAT 132 ************************************************************ consensus_6735#0 CAAGCTAAATTGCTGTTTCGAAAACTGGGACCCAACTCACCAACCCGATGCAGCATAGAA 240 consensus_6735#1 CAAGCTAAATTGCTGTTTCGAAAACTGGGACCCAACTCACCAACCCGATGCAGCATAGAA 192 ************************************************************ consensus_6735#0 ACCGGGCCTTATTTGTTTCATTATTTGATCGAACATGATGTTTGCTATTTAGTTATGTGC 300 consensus_6735#1 ACCGGGCCTTATTTGTTTCATTAT--------------------------------GTGC 220 ************************ **** consensus_6735#0 GACAAGGTGTTTTCGAAACGAATCGCTTTCACATATCTGGAAGATATCGCCCAGGAATTT 360 consensus_6735#1 GACAAGGTGTTTTCGAAACGAATCGCTTTCACATATCTGGAAGATATCGCCCAGGAATTT 280 ************************************************************ consensus_6735#0 CACAGTAACTATGGAAGGAGAGTAAATACAGTGACTAGACCGTACGCTTTTATTGAATTT 420 consensus_6735#1 CACAGTAACTATGGAAGGAGAGTAAATACAGTGACTAGACCGTACGCTTTTATTGAATTT 340 ************************************************************ consensus_6735#0 GATATTTATATCCAGAAAGCCCGGAAAAACCTAACAGATCGTAGGAGAAATATAAATGCT 480 consensus_6735#1 GATATTTATATCCAGAAAGCCCGGAAAAACCTAACAGATCGTAGGAGAAATATAAATGCT 400 ************************************************************ consensus_6735#0 ATAAATAATCAGTTACAAGATGTGCAAAGGATTATGGTACAAAATATTGATGATGTTTTG 540 consensus_6735#1 ATAAATAATCAGTTACAAGATGTGCAAAGGATTATGGTACAAAATATTGATGATGTTTTG 460 ************************************************************ consensus_6735#0 CAACGCGGGACTGTTCTATCTGAACTGGATACCAAAACACAAAATTTATCGATGCTCTCT 600 consensus_6735#1 CAACGCGGGACTGTTCTATCTGAACTGGATACCAAAACACAAAATTTATCGATGCTCTCT 520 ************************************************************ consensus_6735#0 CAGAAGTACAAGAAGGATGCTTCATATTTGAACCGCAAATCGCTGTACGTCAAGGGAGCA 660 consensus_6735#1 CAGAAGTACAAGAAGGATGCTTCATATTTGAACCGCAAATCGCTGTACGTCANGGAG--- 577 **************************************************** ** consensus_6735#0 GTAGCTGGAATAATTTTAATTTTGTTTGTGGTATATTTTTGGGTCATTTGATAGTAATTT 720 consensus_6735#1 ------------------------------------------------------------ consensus_6735#0 ATATGTCATTCAAGCTATGTGTGAT 745 consensus_6735#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||