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Anopheles gambiae
cluster # 6736 cluster # 6736       Sequences # 6       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6736#0 length = 684 sequences # 3  
consensus_6736#1 length = 552 sequences # 1  
consensus_6736#2 length = 532 sequences # 1  
consensus_6736#3 length = 302 sequences # 1  

consensusID : consensus_6736#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 684
fasta sequence
                              [AAGGCCAGAATCGGCACGAGGCTGTTGGTAACGGGGAGGGTAGAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGCCCCCCCCCCCCACCCAAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCTTGTGCTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAGTTTCTTATACTCATTATCAGTTTGTAACCGTTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCGACAAGTCAATTACATACAAGCGGAACGTTAAAACGAGCACAGGCTAGAGGCGATCGTTTTTGGAGGGGGAATGGTGGGCTTGCCACCAGCAACATCCATTTGACGATGCTCCATACCTCAATATGTGTTTCCTTTCTAAAATGAACCACTTTGTTCTGT]

[+] EMBL BX467775             [AAGGCCAGAATCGGCACGAGGCTGTTGGTAACGGGGAGGGTAGAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGCCCCCCCCCCCCACCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM634627             [                                    ccGGTAGAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGCCCCCCCCCCCCACCCCAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCTTGTGCTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAGTTTCTTATACTCATTATCAGTTTGTAACCGTTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCGACAAGTCAATTACATACAAGCGGAACGTTAAAACGAGCACAGGCTAGAGGCGATCGTTTTTGGAGGGGGAATGGTGGGCTTGCCACCAGCAACATCCATTTGACGATGCTCCATACCTCAATATGTGTTTCCTTTCTAAAATGAACCACTTTGTTCTGT]
[+] EMBL BX614290             [                                                                                                                                                                             CTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAGTTTCTTATACTCATTATCAGTTTGTAACCGTTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCGACAAGTCAATTACATACAAACGGA                                                                                                                                       ]


>consensus_6736#0 AAGGCCAGAATCGGCACGAGGCTGTTGGTAACGGGGAGGGTAGAAGTGAAATACAGCTTC ACCACGAACGAGCGGAACTTCCACCCCGCCCCCCCCCCCCACCCAAAATGCAGCTGATGA GGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCTTGTGCTAGCCTTGTCCTCCGCG AGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAGTTTCTTATACTCATTATCAGTT TGTAACCGTTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTT TTGTTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGA GAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCAATGAAATCAAA TTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCACAAAC GCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCGACAAGTCAATTACAT ACAAGCGGAACGTTAAAACGAGCACAGGCTAGAGGCGATCGTTTTTGGAGGGGGAATGGT GGGCTTGCCACCAGCAACATCCATTTGACGATGCTCCATACCTCAATATGTGTTTCCTTT CTAAAATGAACCACTTTGTTCTGT



consensusID : consensus_6736#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence
                              [CACCGCTTTGGTGAAAGTGATCATGGGAACGATCGTGTACTGTTGGTAACGGGGAGGGTAGAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGGCCCCCCCCCCCACCCCAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCTTGTGCTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAGTTTCTTATACTCATTATCAGTTTGTAACCGTTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCGACAAGTCAAT]

[+] EMBL BX627913             [CACCGCTTTGGTGAAAGTGATCATGGGAACGATCGTGTACTGTTGGTAACGGGGAGGGTAGAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGGCCCCCCCCCCCACCCCAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCTTGTGCTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAGTTTCTTATACTCATTATCAGTTTGTAACCGTTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCGACAAGTCAAT]


>consensus_6736#1 CACCGCTTTGGTGAAAGTGATCATGGGAACGATCGTGTACTGTTGGTAACGGGGAGGGTA GAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGGCCCCCCCCCCCAC CCCAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCTTGTG CTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAGTTTC TTATACTCATTATCAGTTTGTAACCGTTTTACTACGATGCCATTTGTAAATGTACAGAAT GTGAAAATGTTGATGTTTTTGTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTG CTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTG AAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGG GCGTAGATCGCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATT CGACAAGTCAAT



consensusID : consensus_6736#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence
                              [CCGGTCAATTACATACAGCGGAACGTTACAGAGCGAGCACAAGCTACTAGATGCGATCGTTTTTGGAGGGGGAACGTTGGGCTCACCACCAGCAACATTTAGTTGACGATGCTCCATACCTCAATTTGTGTTTCCTTTCTAAAATGAACCACTTTGTTCTACGTTGTACGTTCCTTCTTTTTGATTGGATGTTGCTTTTCCTTATGCTTATGACGTAAAGCGCAACGCTTCGGGAAAGAGTTGGCAGCGCTGAAAGGCGTACGATTTAGGCTGGGAAATGGCAACAGGAAAGGGCATCACAATGTGTACGTTTCTCCCGTAGCTGATGGATGGACAGACGACTCCCCTTTCCCCAAAGGTACAAAAAAAAGAAGAAAGGGCTGGATAGAATAAGATGCTGTAAGCGCACTGTAAGTGAAACTTGGGCAGCCAGCGACAAACAACAGTCACAAAACGTATGTACCGTATAAAAAACACACACACACACAAACACATACCCGTCTCGCCCAACAGGAGATTCGAAAAACGGAAG]

[+] EMBL BM606809             [CCGGTCAATTACATACAGCGGAACGTTACAGAGCGAGCACAAGCTACTAGATGCGATCGTTTTTGGAGGGGGAACGTTGGGCTCACCACCAGCAACATTTAGTTGACGATGCTCCATACCTCAATTTGTGTTTCCTTTCTAAAATGAACCACTTTGTTCTACGTTGTACGTTCCTTCTTTTTGATTGGATGTTGCTTTTCCTTATGCTTATGACGTAAAGCGCAACGCTTCGGGAAAGAGTTGGCAGCGCTGAAAGGCGTACGATTTAGGCTGGGAAATGGCAACAGGAAAGGGCATCACAATGTGTACGTTTCTCCCGTAGCTGATGGATGGACAGACGACTCCCCTTTCCCCAAAGGTACAAAAAAAAGAAGAAAGGGCTGGATAGAATAAGATGCTGTAAGCGCACTGTAAGTGAAACTTGGGCAGCCAGCGACAAACAACAGTCACAAAACGTATGTACCGTATAAAAAACACACACACACACAAACACATACCCGTCTCGCCCAACAGGAGATTCGAAAAACGGAAG]


>consensus_6736#2 CCGGTCAATTACATACAGCGGAACGTTACAGAGCGAGCACAAGCTACTAGATGCGATCGT TTTTGGAGGGGGAACGTTGGGCTCACCACCAGCAACATTTAGTTGACGATGCTCCATACC TCAATTTGTGTTTCCTTTCTAAAATGAACCACTTTGTTCTACGTTGTACGTTCCTTCTTT TTGATTGGATGTTGCTTTTCCTTATGCTTATGACGTAAAGCGCAACGCTTCGGGAAAGAG TTGGCAGCGCTGAAAGGCGTACGATTTAGGCTGGGAAATGGCAACAGGAAAGGGCATCAC AATGTGTACGTTTCTCCCGTAGCTGATGGATGGACAGACGACTCCCCTTTCCCCAAAGGT ACAAAAAAAAGAAGAAAGGGCTGGATAGAATAAGATGCTGTAAGCGCACTGTAAGTGAAA CTTGGGCAGCCAGCGACAAACAACAGTCACAAAACGTATGTACCGTATAAAAAACACACA CACACACAAACACATACCCGTCTCGCCCAACAGGAGATTCGAAAAACGGAAG



consensusID : consensus_6736#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence
                              [AGAATCGCCACGAGGTGTAGTACCGTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCNATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCG]

[+] EMBL BX469134             [AGAATCGCCACGAGGTGTAGTACCGTTTACTACGATGCCATTTGTAAATGTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGAAATCNATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGGCGTAGATCGCCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATTCG]


>consensus_6736#3 AGAATCGCCACGAGGTGTAGTACCGTTTACTACGATGCCATTTGTAAATGTACAGAATGT GAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCTTTCATTTTCGGATTTTTTTTTTGC TCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTTCGTGGGGGGCTGA AATCNATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGTTCTTCAAAACGGG CGTAGATCGCCACAAACGCTTGCGCGATCGAGAACCCGCTGATGAGCAACACATTACATT CG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6736#1      CACCGCTTTGGTGAAAGTGATCATGGGAACGATCGTGTACTGTTGGTAACGGGGAGGGTA 60
consensus_6736#3      ------------------------------------------------------------
consensus_6736#0      ------------------AAGGCCAGAATCGGCACGAGGCTGTTGGTAACGGGGAGGGTA 42
consensus_6736#2      ---------------------CCGGTCAATTACATACAGCGGAACGTTACAGAGCGAGCA 39
                                                                                  

consensus_6736#1      GAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGGCCCCCCC----CC 116
consensus_6736#3      ------------------------------------------------------------
consensus_6736#0      GAAGTGAAATACAGCTTCACCACGAACGAGCGGAACTTCCACCCCGCCCCCCCC----CC 98
consensus_6736#2      CAAGCTACTAGATGCGATCGTTTTTGGAGGGGGAACGTTGGGCTCACCACCAGCAACATT 99
                                                                                  

consensus_6736#1      CCACCCCAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCT 176
consensus_6736#3      ------------------------------------------------------------
consensus_6736#0      CCACCCAAAATGCAGCTGATGAGGATGCCCCACTGCAACGAAAAGGAGGTAGTTGGGGCT 158
consensus_6736#2      TAGTTGACGATGCTCCATACCTCAATTTGTGTTTCCTTTCTAAAATGAACCACTTTGTTC 159
                                                                                  

consensus_6736#1      TGTGCTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAG 236
consensus_6736#3      ------------------------------------------------------------
consensus_6736#0      TGTGCTAGCCTTGTCCTCCGCGAGACGCCCGCCCATGTGTTTAGTGGGCGTGTACGGCAG 218
consensus_6736#2      TACGTTGTACGTTCCTTCTTTTTGAT-TGGATGTTGCTTTTCCTTATGCTTATGACGTAA 218
                                                                                  

consensus_6736#1      TTTCTTATACTCATTATCAG-TTTGTAACCGTTTTAC----TACGATGCCATTTGTAAAT 291
consensus_6736#3      ------AGAATCGCCACGAGGTGTAGTACCGTTT-AC----TACGATGCCATTTGTAAAT 49
consensus_6736#0      TTTCTTATACTCATTATCAG-TTTGTAACCGTTTTAC----TACGATGCCATTTGTAAAT 273
consensus_6736#2      AGCGCAACGCTTCGGGAAAGAGTTGGCAGCGCTGAAAGGCGTACGATTTAGGCTGGGAAA 278
                            *   *       **   *   * ** *  *     ******      **  ** 

consensus_6736#1      GTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTT-ATTAGCT--TTCATTTTCGG 348
consensus_6736#3      GTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCT--TTCATTTTCGG 107
consensus_6736#0      GTACAGAATGTGAAAATGTTGATGTTTTTGTTTTTTTTTTATTAGCT--TTCATTTTCGG 331
consensus_6736#2      TGGCAACAGGAAAGGGCATCACAATGTGTACGTTTCTCCCGT-AGCTGATGGATGGACAG 337
                         **  * *  *     *     * * *   *** *    * ****  *  **   * *

consensus_6736#1      ATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTT 408
consensus_6736#3      ATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTT 167
consensus_6736#0      ATTTTTTTTTTGCTCAAGATCGCGCGCGAGAGCTGCGGAAAGAACGGAAGGAAGGCGTTT 391
consensus_6736#2      ACGACTCCCCTTTCCCCAAAGGTACAAAAAAAAGAAGAAAGGGCTGGATAGAATAAGATG 397
                      *    *    *   *   *  *  *   * *     * ** *   ***  ***   * * 

consensus_6736#1      CGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGT 468
consensus_6736#3      CGTGGGGGGCTGAAATCNATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGT 227
consensus_6736#0      CGTGGGGGGCTGAAATCAATGAAATCAAATTAATCGTATTGCTAAAACACAATACACTGT 451
consensus_6736#2      C-TGTAAGCGCACTGTAAGTGAAACTTGGGCAGCC--AGCGACAAACAACAGT------- 447
                      * **   *       *   *****       *  *  *  *  ***  *** *       

consensus_6736#1      TCTTCAAAACGGGCGTAGATCGC-ACAAACGCTTGCGCGATCGAGAACCCGCTGATGA-G 526
consensus_6736#3      TCTTCAAAACGGGCGTAGATCGCCACAAACGCTTGCGCGATCGAGAACCCGCTGATGA-G 286
consensus_6736#0      TCTTCAAAACGGGCGTAGATCGC-ACAAACGCTTGCGCGATCGAGAACCCGCTGATGA-G 509
consensus_6736#2      --CACAAAACGTATGTACCGTATAAAAAACACACACACACACAAACACATACCCGTCTCG 505
                          *******   ***       * **** *   * *   * *  **   *   *   *

consensus_6736#1      CAACACATTACATTCGACAAGTCAAT---------------------------------- 552
consensus_6736#3      CAACACATTACATTCG-------------------------------------------- 302
consensus_6736#0      CAACACATTACATTCGACAAGTCAATTACATACAAGCGGAACGTTAAAACGAGCACAGGC 569
consensus_6736#2      CCCAACAGGAGATTCGAAAAACGGAAG--------------------------------- 532
                      *   ***  * *****                                            

consensus_6736#1      ------------------------------------------------------------
consensus_6736#3      ------------------------------------------------------------
consensus_6736#0      TAGAGGCGATCGTTTTTGGAGGGGGAATGGTGGGCTTGCCACCAGCAACATCCATTTGAC 629
consensus_6736#2      ------------------------------------------------------------
                                                                                  

consensus_6736#1      -------------------------------------------------------
consensus_6736#3      -------------------------------------------------------
consensus_6736#0      GATGCTCCATACCTCAATATGTGTTTCCTTTCTAAAATGAACCACTTTGTTCTGT 684
consensus_6736#2      -------------------------------------------------------
                                                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)