These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 986 fasta sequence [TTTAGCGCCTTGTTTTATT-AAAAAAAATGCACCTTCAATCATGCTGACGTCACTTAAGTATCTTCGAGCTACTCTAACAGTTTCAAATGCATTATCCGACATTTTTCGCGTACCTTATACTCATCTACCTTACTTTACAAATAATAATACCTTCTTGTTTTTTTTTATTTACTGCAAGATACTTGTTAAATTCGAATCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATCCTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTCCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTGAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTGTCGAGCGTGTCGCGCACACGGTAGAACGGCAGGCAGCCGCTCATGCTCATCATCTTTACGCGGTACGACGGTCCATCGAGCCCGTCCGGGAAGAAGGGTGCATCGCGCGTTACGAGCGGTTCGAACTGCGTCTTCCACTTGGCTTTG] [+] EMBL CNS08PRH [TTTAGCGCCTTGTTTTATT AAAAAAAATGCACCTTCAATCATGCTGACGTCACTTAAGTATCTTCGAGCTACTCTAACAGTTTCAAATGCATTATCCGACATTTTTCGCGTACCTTATACTCATCTACCTTACTTTACAAATAATAATACCTTCTTGTTTTTTTTTATTTACTGCAAGATACTTGTTAAATTCGAATCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATCCTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTCCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGAACTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTGAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTACAAAAAAGGTAGGCCCACGATCGTAGTGTCGAGCGTGTTGCGCACACG ] [+] EMBL CNS08FBH [ ATTAAAAAAAAATTCACCTTCAATCATGCTGACGTCACTTAAGTATCTTCGAGCTACTCTAACAGTTTCAAATGCATTATCCGACATTTTTCGCGTACCTTATACTCATCTACCTTACTTTACAAATAATAATACCTTCTTTTTTTTTTTTATTTACTGCAAGATACTTGTTAAATTCGAATCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGA ] [-] EMBL BX625111 [ AGATACTTGTTAAATTCGAATCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATCCTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTCCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTGAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTGTCGAGCGTGTCGCGCACACGGTAGAACGGCAGGCAGCCGCTCATGCTCATCATCT ] [-] EMBL BM577788 [ TTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATCCTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTCCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTGAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTGTCGAGCGTGTCGCGCACACGGTAGcgg ] [-] EMBL BX603298 [ gGGGGGGATTAAGCGATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTGCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTTAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTGCTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTGGTGTCGAGCGAGTCGCGCACACGGTAGAACGGCAGGCAGCCGCTCATGCTCATCATCTTTACGCGGTACGACGGTCCATCGAGCCCGTCCGGGAAGAAGGGTGCATCGCGCGTTACGAGCGGTTCGAACTGCGTCTTCCACTTGGCTTTG] consensusID : consensus_6737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [CAAGATACTTGTTAAATTCGAATCCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATCCTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTCCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTGAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTGTCGAGCGTGTCGCGCACCGGACGCGTGGGCGG] [-] EMBL BM589298 [CAAGATACTTGTTAAATTCGAATCCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGCGCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATCCTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGCCCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTCCCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCCTCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGCTTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTGAGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGGTGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCGAGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCCGGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTGTCGAGCGTGTCGCGCACCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6737#0 TTTAGCGCCTTGTTTTATTAAAAAAAATGCACCTTCAATCATGCTGACGTCACTTAAGTA 60 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 TCTTCGAGCTACTCTAACAGTTTCAAATGCATTATCCGACATTTTTCGCGTACCTTATAC 120 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 TCATCTACCTTACTTTACAAATAATAATACCTTCTTGTTTTTTTTTATTTACTGCAAGAT 180 consensus_6737#1 ------------------------------------------------------CAAGAT 6 ****** consensus_6737#0 ACTTGTTAAATTCGAATCC-ATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGC 239 consensus_6737#1 ACTTGTTAAATTCGAATCCCATCCCTGGTTTCATCCAGAGCATCCGCCCTTTGGAGCGGC 66 ******************* **************************************** consensus_6737#0 GCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATC 299 consensus_6737#1 GCACTAAATAAATAACGAGACGCGTCAGAAGTACGCACTGTGTGAGCTCTTTGGTAAATC 126 ************************************************************ consensus_6737#0 CTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGC 359 consensus_6737#1 CTCTTCCACCCTGTATAGACATCGGGGGGAGCAAGCAATTAGCGCGGATCGAATATCGGC 186 ************************************************************ consensus_6737#0 CCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTC 419 consensus_6737#1 CCGTAGAACAGCGGCAGCCCGGTCGCATCGTGGCGCAGATAGATCAGGAACGGTGCGTTC 246 ************************************************************ consensus_6737#0 CCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCC 479 consensus_6737#1 CCATTGAACTGGCGCTGGGATCCGATACGATCGACCAGCGCCGAGGTGGCCGCTGCACCC 306 ************************************************************ consensus_6737#0 TCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGC 539 consensus_6737#1 TCCGTACCTTCCTCATCGATCGTGAGATCTAGCTTGTGCAGGATCTGATTCACGTACGGC 366 ************************************************************ consensus_6737#0 TTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTG 599 consensus_6737#1 TTCGGTCCCGCACTGCTGCTACTATCGATCATGTTCGAGAGGTCGCTCTTCGCCGGGCTG 426 ************************************************************ consensus_6737#0 AGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGG 659 consensus_6737#1 AGGATGGAGTTGAAGCCCAGCTTCTGGAAGGACTGCAGCAGATCGACACTGTTCCGGAGG 486 ************************************************************ consensus_6737#0 TGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCG 719 consensus_6737#1 TGCATCTTCGGCAGCCGCACCATCGTCGACTGGAGCTTCATCTGGCTGATCCACGAGTCG 546 ************************************************************ consensus_6737#0 AGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCC 779 consensus_6737#1 AGCATCTTGCCGGTGAGCGTTGCCTGCAGCCGGCGGATGGCCGTCCTACTCGAGTTGGCC 606 ************************************************************ consensus_6737#0 GGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTG 839 consensus_6737#1 GGCTGTATCAGGTACATCGTGCTGGTGTCGTCCCGGTACGGTAGGCCCACGATCGTAGTG 666 ************************************************************ consensus_6737#0 TCGAGCGTGTCGCGCACACGGTAGAACGGCAGGCAGCCGCTCATGCTCATCATCTTTACG 899 consensus_6737#1 TCGAGCGTGTCGCGCACCGGACGCGTGGGCGG---------------------------- 698 ***************** * *** * consensus_6737#0 CGGTACGACGGTCCATCGAGCCCGTCCGGGAAGAAGGGTGCATCGCGCGTTACGAGCGGT 959 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 TCGAACTGCGTCTTCCACTTGGCTTTG 986 consensus_6737#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||