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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 739 fasta sequence
[CCGGAGACAACCTGCTGACGGAGAACGCTTCTTGTTTTAAGAAGACGAGTAAACGCTCGAGTTTTGCAGTTTCTCTGCACCTTCCAACCGTTTGGATCAGTCTCGTGGTGGTAATGTGGAGCAAAAGTTAATATTGGTGTACTGTTAGTTCCTTCCGGTGCAGAGGTGGTGTGAAAATGTTTAATTTTAGCTCCGCTGGAACGTCTGGCGAGAAGGAACCGCTGTTGAGTGGCAAACTGTTGTGTCCGGTCGTGGATTTGGAGGGGACGTCTTCGAATGTTGGGTTAAGGGAGGTTCCATTGCCCCAGGAGGAGTATGAAGCACCGTATCGTCATCGCTGTTTGGAATGGCTGTCCCAAGTCTTTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCATACACGATGCGTATCTCGCTGTCGATCGCCATCACGGAGATGGTCAACAAAACGCACGGAGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTTCACCGGGGGCGAGTTCGATTGGGACGAGGAGCTGCAGGGCATCATCTTATCCTCGTTCTACTGGGGCTACGTCATCACGCACATCCCCGGCGGTATGCTGGCGGAAAAGTTTGGCGGCAAGTGGACACTTAGTTTGGGTATCCTCTCAACGGCCTTCTTCACACTGATCACCCCCGTGGGCGGTGGAGCTCGGTGGAT]
[+] EMBL BM657052 [CCGGAGACAACCTGCTGACGGAGAACGCTTCTTGTTTTAAGAAGACGAGTAAACGCTCGAGTTTTGCAGTTTCTCTGCACCTTCCAACCGTTTGGATCAGTCTCGTGGTGGTAATGTGGAGCAAAAGTTAATATTGGTGTACTGTTAGTTCCTTCCGGTGCAGAGGTGGTGTGAAAATGTTTAATTTTAGCTCCGCTGGAACGTCTGGCGAGAAGGAACCGCTGTTGAGTGGCAAACTGTTGTGTCCGGTCGTGGATTTGGAGGGGACGTCTTCGAATGTTGGGTTAAGGGAGGTTCCATTGCCCCAGGAGGAGTATGAAGCACCGTATCGTCATCGCTGTTTGGAATGGCTGTCCCAAGTCTTTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCATACACGATGCGTATCTCGCTGTCGATCGCCATCACGGAGATGGTCAACAAAACGCACGGAGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTTCACCGGGGGCGAGTTCGATTGGGACGAGGAGCTGCAGGGCATCATCTTATCCTCGTTCTACTGGGGCTACGTCATCACGCACATCCCCGGCGGTATGCTGG ]
[+] EMBL BM657429 [ ccgGTGGAGCAAAAGTTAATATTGGTGTACTGTTAGTTCCTTCCGGTGCAGAGGTGGTGTGAAAATGTTTAATTTTAGCTCCGCTGGAACGTCTGGCGAGAAGGAACCGCTGTTGAGTGGCAAACTGTTGTGTCCGGTCGTGGATTTGGAGGGGACGTCTTCGAATGTTGGGTTAAGGGAGGTTCCATTGCCCCAGGAGGAGTATGAAGCACCGTATCGTCATCGCTGTTTGGAATGGCTGTCCCAAGTCTTTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCATACACGATGCGTATCTCGCTGTCGATCGCCATCACGGAGATGGTCAACAAAACGCACGGAGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTTCACCGGGGGCGAGTTCGATTGGGACGAGGAGCTGCAGGGCATCATCTTATCCTCGTTCTACTGGGGCTACGTCATCACGCACATCCCCGGCGGTATGCTGGCGGAAAAGTTTGGCGGCAAGTGGACACTTAGTTTGGGTATCCTCTCAACGGCCTTCTTCACACTGATCACCCCCGTGGGCGGTGGAGCTCGGTGGAT]
consensusID : consensus_6739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence
[CCGCCAATGGCCACGACGAGCTTGCTACAGTTGCCGTGTCACTAGTGCGAACGCGATTTTCCATTCCTGAAGTCAGCTCTGCTCGGTTGGATTGTATTCAGCGTTTTGGTTTGCGAAAATTTAACGAAAATGTGAATTGACATTCGCCGGCTGTGTTGCGTATAGTGTTTATGTGTGAATATAAGAAATTATTCTGTGCCAATGCCAAATGGTGGATGTGATTTACCAGCAGCCAAAGTTGGTGCAACAAAAAGGGCGAAAGTTTTAACTGTACACCGACCCATCCACCTCTAAAGACTATTCTTGAGGGTCTCGGCTGTGGCGAAAGTCGTCGCGTTGGACGCGTACATCGTCACAGTGTGATTGTATTTGTATATTTCTCTATCTCGTATTTGTTGTGGAAAGTGTGCTGAAGAAAAACTGCCATCACTATGTATAGTTCCAGCTGGCAGCAGCGGGTATCCCGATTCTTTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCATACACGATGCGTATCTCGCTGTCGATCGCCATCACGTAGATGGTCAACAAAACGCACGGAGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTTCACCGGGGGGCGAGTTCGATTGGGACGAGGAGCTGCAGGGCATC]
[+] EMBL BM577795 [CCGCCAATGGCCACGACGAGCTTGCTACAGTTGCCGTGTCACTAGTGCGAACGCGATTTTCCATTCCTGAAGTCAGCTCTGCTCGGTTGGATTGTATTCAGCGTTTTGGTTTGCGAAAATTTAACGAAAATGTGAATTGACATTCGCCGGCTGTGTTGCGTATAGTGTTTATGTGTGAATATAAGAAATTATTCTGTGCCAATGCCAAATGGTGGATGTGATTTACCAGCAGCCAAAGTTGGTGCAACAAAAAGGGCGAAAGTTTTAACTGTACACCGACCCATCCACCTCTAAAGACTATTCTTGAGGGTCTCGGCTGTGGCGAAAGTCGTCGCGTTGGACGCGTACATCGTCACAGTGTGATTGTATTTGTATATTTCTCTATCTCGTATTTGTTGTGGAAAGTGTGCTGAAGAAAAACTGCCATCACTATGTATAGTTCCAGCTGGCAGCAGCGGGTATCCCGATTCTTTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCATACACGATGCGTATCTCGCTGTCGATCGCCATCACGTAGATGGTCAACAAAACGCACGGAGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTTCACCGGGGGGCGAGTTCGATTGGGACGAGGAGCTGCAGGGCATC]
[+] EMBL BM604465 [ ccGGCCACGACGAGCTTGCTACAGTTGCCGTGTCACTAGTGCGAACGCGATTTTCCATTCCTGAAGTCAGCTCTGCTCGGTTGGATTGTATTCAGCGTTTTGGTTTGCGAAAATTTAACGAAAATGTGAATTGACATTCGCCGGCTGTGTTGCGTATAGTGTTTATGTGTGAATATAAGAAATTATTCTGTGCCAATGCCAAATGGTGGATGTGATTTACCAGCAGCCAAAGTTGGTGCAACAAAAAGGGCGAAAGTTTTAACTGTACACCGACCCATCCACCTCTAAAGACTATTCTTGAGGGTCTCGGCTGTGGCGAAAGTCGTCGCGTTGGACGCGTACATCGTCACAGTGTGATTGTATTTGTATATTTCTCTATCTCGTATTTGTTGTGGAAAGTGTGCTGAAGAAAAACTGCCATCACTATGTATAGTTCCAGCTGGCAGCAGCGGGTATCCCGATTCTTTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCATACACGATGCGTATCTCGCTGTCGATCGCCATCACGGAGATGGTCAACAAAACGCACGGAGCGACCGAAGAGGACGGCGGCG ]
consensusID : consensus_6739#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[CCGCTCGTGGTGGTAATGTGGAGCAAAAGTTAATATTGGTGTACTGTTAGTTCCTTCCGGTGCAGAGGTGGTGTGAAAATGTTTAATTTTAGCTCCGCTGGAACGTCTGGCGAGAAGGAACCGCTGTTGAGTGGCAAACTGTTGTGTCCGGTCGTGGATTTGGAGGGGACGTCTTCGAATGTTGGGTTAAGGGAGGTTCCATTGCCCCAGGAGGAGTATGAAGCACCGTATCGTCATCGCTGTTTGGAATGGCTGTCCCAAGCACTCGTCGGTTCGTTGACGATCGGCACGACCTTTCTGCTATCCCCCGTATCCGGTATCCTGACGGACAAGATTGGGCTGCGGCGAACAACCTTCATTGGTGGGCTGCTAACATGCAGCGGCATGTTCCTGTCGTCCTTCTTCACGGATAACGTTACCGCACTGTATTTCACGTACGGTATCATGTTTGGGTTGGGAGCGGCACTGGCTTATACTCCGTCCCTCGCTATTCTCGGTCACTATTTCAAGCGCTACCTAGGGCTGGTGAATGGCATTGTAACGGCAGGCTCGAGCGTGTTCACCGCCATCATGCCCATCTGTCTCGACTATCTGGTCGAACATACCGGGCTGAAAACGTCCTTCCGCATACTGGCCGTCATCTCGAGCTTTGTGATATTCTGTGCAATGCTGTACAAACCACTACAACCTC]
[+] EMBL BM652864 [CCGCTCGTGGTGGTAATGTGGAGCAAAAGTTAATATTGGTGTACTGTTAGTTCCTTCCGGTGCAGAGGTGGTGTGAAAATGTTTAATTTTAGCTCCGCTGGAACGTCTGGCGAGAAGGAACCGCTGTTGAGTGGCAAACTGTTGTGTCCGGTCGTGGATTTGGAGGGGACGTCTTCGAATGTTGGGTTAAGGGAGGTTCCATTGCCCCAGGAGGAGTATGAAGCACCGTATCGTCATCGCTGTTTGGAATGGCTGTCCCAAGCACTCGTCGGTTCGTTGACGATCGGCACGACCTTTCTGCTATCCCCCGTATCCGGTATCCTGACGGACAAGATTGGGCTGCGGCGAACAACCTTCATTGGTGGGCTGCTAACATGCAGCGGCATGTTCCTGTCGTCCTTCTTCACGGATAACGTTACCGCACTGTATTTCACGTACGGTATCATGTTTGGGTTGGGAGCGGCACTGGCTTATACTCCGTCCCTCGCTATTCTCGGTCACTATTTCAAGCGCTACCTAGGGCTGGTGAATGGCATTGTAACGGCAGGCTCGAGCGTGTTCACCGCCATCATGCCCATCTGTCTCGACTATCTGGTCGAACATACCGGGCTGAAAACGTCCTTCCGCATACTGGCCGTCATCTCGAGCTTTGTGATATTCTGTGCAATGCTGTACAAACCACTACAACCTC]
consensusID : consensus_6739#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence
[GGCGGTCGGAGACAATGAAGCATCCAGCAAAGCAGCACTCGTCGGTTCGTTGACGATCGGCACGACCTTTCTGCTATCCCCCGTATCCGGTATCCTGACGGACAAGATTGGGCTGCGGCGAACAACCTTCATTGGTGGGCTGCTAACATGCAGCGGCATGTTCCTGTCGTCCTTCTTCACGGATAACGTTACCGCACTGTATTTCACGTACGGTATCATGTTTGGGTTGGGAGCGGCACTGGCTTATACTCCGTCCCTCGCTATTCTCGGTCACTATTTCAAGCGCTACCTAGGGCTGGTGAATGGCATTGTAACGGCAGGCTCGAGCGTGTTCAC]
[+] EMBL BM646910 [GGCGGTCGGAGACAATGAAGCATCCAGCAAAGCAGCACTCGTCGGTTCGTTGACGATCGGCACGACCTTTCTGCTATCCCCCGTATCCGGTATCCTGACGGACAAGATTGGGCTGCGGCGAACAACCTTCATTGGTGGGCTGCTAACATGCAGCGGCATGTTCCTGTCGTCCTTCTTCACGGATAACGTTACCGCACTGTATTTCACGTACGGTATCATGTTTGGGTTGGGAGCGGCACTGGCTTATACTCCGTCCCTCGCTATTCTCGGTCACTATTTCAAGCGCTACCTAGGGCTGGTGAATGGCATTGTAACGGCAGGCTCGAGCGTGTTCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6739#2 CCGCTCGTGGTGGTAATGTGGAGCAAAAGTTAATATTGGTGTACTGTTAGTTCCTTCCGG 60
consensus_6739#3 ------------------------------------------------------------
consensus_6739#0 ------------------------------------------------------------
consensus_6739#1 --CCGCCAATGGCCACGACGAGCTTGCTACAGTTGCCGTGTCACTAGTGCGAACGCGATT 58
consensus_6739#2 TGCAGAGGTGGTGTGAAAATGTTTAATTTTAGCTCCGCTGGAACGTCTGGCGAGAAGGAA 120
consensus_6739#3 ------------------------------------------------------------
consensus_6739#0 --------CCGGAGACAAC-CTGCT--GACGGAGAACGCT-----TCTTGTTTTAAGAAG 44
consensus_6739#1 TTCCATTCCTGAAGTCAGCTCTGCTCGGTTGGATTGTATTCAGCGTTTTGGTTTGCGAAA 118
consensus_6739#2 CCGCTGTTGAGTGGCAAACTGTTGTGTCCGGTCGTGGATTTGGAGGGGACGTCTTCGAAT 180
consensus_6739#3 ------------------------------------------------------------
consensus_6739#0 ACG-AGTAAACGCTCGAGTTT---TGCAGTTTCTCTGCACCTTCCAACCGTT-TGGATCA 99
consensus_6739#1 ATTTAACGAAAATGTGAATTGACATTCGCCGGCTGTGTTGCGTATAGTGTTTATGTGTGA 178
consensus_6739#2 GTTGGGTTAAGGGAGGTTCCATTGCCCCAGGAGGAGTATGAAGCACCGTATCGTCATCGC 240
consensus_6739#3 -------------------------------GGCGGTCGGAGACAATGAAGCATC----- 24
consensus_6739#0 GT---CTC-GTGGTGGTAATGTGGAG----CAAAAGTTAATATTGGTGTACTGTTAGTTC 151
consensus_6739#1 AT---ATAAGAAATTATTCTGTGCCAATGCCAAATGGTGGATGTGATTTACCAGCAGCCA 235
* *
consensus_6739#2 TGTTTGGAATGGCTGTCCCAAGCACTCGTCGGTTCGTTGACGATCGGCACGACCTTTCTG 300
consensus_6739#3 ----CAGCAAAGC-------AGCACTCGTCGGTTCGTTGACGATCGGCACGACCTTTCTG 73
consensus_6739#0 CTTCCGGTGCAG--AGGTGGTGTGAAAATG-TTTAATTTTAGCTCCGCTGGAACGTCTGG 208
consensus_6739#1 AAGTTGGTGCAAC-AAAAAGGGCGAAAGT--TTTAACTGTACACCGACCCATCCACCTCT 292
* * * ** * * * *
consensus_6739#2 CTATCCCCCGTATCCGGTATCCTGACGGACAAGATTGGGCTGCGGCGAACAACCTTCATT 360
consensus_6739#3 CTATCCCCCGTATCCGGTATCCTGACGGACAAGATTGGGCTGCGGCGAACAACCTTCATT 133
consensus_6739#0 CGAGA--------AGGAACCGCTGTTGAGTGGCAAACTGTTGTGTCCGGT--CGTGGATT 258
consensus_6739#1 AAAGACTATTCTTGAGGGTCTCGGCTGTGGCGAAAGTCGTCGCGTTGGACG-CGTACATC 351
* * * * * * * * * * * **
consensus_6739#2 GGTGGGCTGCTAACATGCAGCGGCATGTTCCTGTCGTCC-TTCTTCACGGATAACGTTAC 419
consensus_6739#3 GGTGGGCTGCTAACATGCAGCGGCATGTTCCTGTCGTCC-TTCTTCACGGATAACGTTAC 192
consensus_6739#0 ----TGGAGGGGACGTCTTCGAATGTTGGGTTAAGGGAGGTTCCAT----------TGCC 304
consensus_6739#1 GTCACAGTGTGATTGTATTTGTATATTTCTCTATCTCGTATTTGTTGTGGAAAGTGTGCT 411
* * * * ** *
consensus_6739#2 CGCACTGTATTTCACGTACGGTATCATGTTTGGGTTGGGAGCGGCACTGGCTTATACTCC 479
consensus_6739#3 CGCACTGTATTTCACGTACGGTATCATGTTTGGGTTGGGAGCGGCACTGGCTTATACTCC 252
consensus_6739#0 CCAGGAGGAGTATGAA-GCACCGTATCGTCATCGCTGTTTGGAATGGCTGTCCCAAGTCT 363
consensus_6739#1 GAAGAAAAACTGCCATCACTATGTATAGTTCCAGCTGGCAGCAGCGGGTATCCCGATTCT 471
* * * * ** * ** * * **
consensus_6739#2 GTCCCTCGCTATTCTCGGT--CACTATT--TCAAGCGCTACCTAGGGCTGGTGAATGGCA 535
consensus_6739#3 GTCCCTCGCTATTCTCGGT--CACTATT--TCAAGCGCTACCTAGGGCTGGTGAATGGCA 308
consensus_6739#0 TTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCAT 423
consensus_6739#1 TTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCAT 531
* * * * *** * ** *** * *** *** * * * ******
consensus_6739#2 TTGTAACGGCAGGCTCGAGCGTGTTCACCGCCATCATGCCCATCTGTCTCGACTATCTGG 595
consensus_6739#3 TTGTAACGGCAGGCTCGAGCGTGTTCAC-------------------------------- 336
consensus_6739#0 ACACGATGCGTATCTCGCTGTCGATCGCCATCACGGAGATGGTCAAC--AAAACGCACGG 481
consensus_6739#1 ACACGATGCGTATCTCGCTGTCGATCGCCATCACGTAGATGGTCAAC--AAAACGCACGG 589
* * **** * ** *
consensus_6739#2 TCGAACATACCGGGCTGAAAACGTCCTTCCGCATACTGGCCGTCATCTCGAGCTTTGTGA 655
consensus_6739#3 ------------------------------------------------------------
consensus_6739#0 AGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTT 541
consensus_6739#1 AGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTT 649
consensus_6739#2 TATTCTGTGCAATGCTGTACAAACCACTACAACCTC------------------------ 691
consensus_6739#3 ------------------------------------------------------------
consensus_6739#0 CACCGGGGG-CGAGTTCGATTGGGACGAGGAGCTGCAGGGCATCATCTTATCCTCGTTCT 600
consensus_6739#1 CACCGGGGGGCGAGTTCGATTGGGACGAGGAGCTGCAGGGCATC---------------- 693
consensus_6739#2 ------------------------------------------------------------
consensus_6739#3 ------------------------------------------------------------
consensus_6739#0 ACTGGGGCTACGTCATCACGCACATCCCCGGCGGTATGCTGGCGGAAAAGTTTGGCGGCA 660
consensus_6739#1 ------------------------------------------------------------
consensus_6739#2 ------------------------------------------------------------
consensus_6739#3 ------------------------------------------------------------
consensus_6739#0 AGTGGACACTTAGTTTGGGTATCCTCTCAACGGCCTTCTTCACACTGATCACCCCCGTGG 720
consensus_6739#1 ------------------------------------------------------------
consensus_6739#2 -------------------
consensus_6739#3 -------------------
consensus_6739#0 GCGGTGGAGCTCGGTGGAT 739
consensus_6739#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||