These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1042 fasta sequence [GCCCGAGGTTAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGCACGTGGGATGGATTTTCTAACCTCCCGTGGGATCATACATCGTGACCTGGCCGCCCGTAACATTCTCATCACCGACGACCATACGTGCAATGGTGGCGGACTTTGGGTTCGCCCGCGACATCGTCACTCCAAGGTGTACGAGCGGAAGAGCGANGGCCGGTTGCCGATCCGCTGGATGGCGACCGAATCACTGTACGACAACATCTTCACCGTCAAGTCCGACATCTGGAGCTTCGGCATCCTGATGTGGGAGATCGTCACGCTCGGTCCACGCCCTATCCGGGCATTGCGGCGGCGGATGTGATGCGCAAGGTGCGCGACGGATACCGGCTCGAGAAGCCGGAACACTGCCG-CGGGAGCTGTACAACATCATGTTCTACTGCTGGGCGG-CGATCCGAATGAGCGG-CCGGCTT-CCGGAGGTGGTCGAGATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCCGGACCACAA-TACTACAATATTGCTCAACNTGAGCGGCGAGNAAGCTGTGAACGGACTGGGGTTG-CCGAAGGCCGGAAAGCCCATTTGATCAGCATACTCAAACGAACAAAGGCGATA-NAATTG-ATNCTGCA-CAAACGCAA-CACAAGGTGTGCATGTGCTGCAAGTTATTGACTAGGTTGTGATAAGATTGAGGTCTGATTCCGATCGTAGGAATGATCGTTTGCTCTTATTTATACGAGCTCGTCCGGGAGTTGTATAGCGGCAGAGAACAAATAGATAAAGTGTACCAGCAAATCCCGCTTCTAGTGTGTAGCAATAAGTACGATTGTAAGTTTCAGCTGGATTTAACCTGATTTTATTAAGCATTCATTTCTCTGTGTACATACATTGGCGTTGGATCAGATGATCTGCGTGCAACCCCCCCCCCCCCTCAT] [+] EMBL AL693367 [GCCCGAGGTTAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGCACGTGGGATGGATTTTCTAACCTCCCGTGGGATCATACATCGTGACCTGGCCGCCCGTAACATTCTCATCACCGACGACCATACGTGCAATGGTGGCGGACTTTGGGTTCGCCCGCGACATCGTCACTCCAAGGTGTACGAGCGGAAGAGCGANGGCCGGTTGCCGATCCGCTGGATGGCGACCGAATCACTGTACGACAACATCTTCACCGTCAAGTCCGACATCTGGAGCTTCGGCATCCTGATGTGGGAGATCGTCACGCTCGGTCCACGCCCTATCCGGGCATTGCGGCGGCGGATGTGATGCGCAAGGTGCGCGACGGATACCGGCTCGAGAAGCCGGAACACTGCCG CGGGAGCTGTACAACATCATGTTCTACTGCTGGGCGG CGATCCGAATGAGCGG CCGGCTT CCGGAGGTGGTCGAGATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCCGGACCACAA TACTACAATATTGCTCAACNTGAGCGGCGAGNAAGCTGTGAACGGACTGGGGTTG CCGAAGGCCGGAAAGCCCATTTGATCAGCATACTCAAACGAACAAAGGCGATA NAATTG ATNCTGCA CAAACGCAA CACAAGGTGTGCATGTGC ] [+] EMBL BX626813 [ CGCGACGGCTACCGGCTCGAGAAGCCGGAACACTGCCGCCGGGAGCTGTACAACATCATGTTCTACTGCTGGGCGGCCGATCCGAATGAGCGGCCCGGCTTCCCGGAGGTGGTCGAGATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCC GACCACAACTACTACAATA TGCTCAACATGAGCGGCGAG AAGCTGTGAACGGACTGGGGTTGCCCGAGGCCCGGAAAGCCCATTTGATAAGCATACTCAAACGAACAAAGGCGATAGAAATTGAAGCCTGCACCACACGCAACCACAAGGTGTGCATGGTTTGCAAGTTATTGACTAGGTTGTGATAAGATTGAGGTCTGATTCCGATCGTAGGAATGATCGTTTGCTCTTATTTATACGAGCTCGTCCGGGAGTTGTATAGCGGCAGAGAACAAATAGATAAAGTGTACCAGCAAATCCCGCTTCTAGTGTGTAGCAATAAGTACGATTGTAAGTTTCAGCTGGATTTAACCTGATTTTATTAAGCATTCATTTCTCTGTGTACATACATTGGCGTTGGATCAGATGATCTGCGTGCAACCCCCCCCCCCCCTCAT] consensusID : consensus_6743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 819 fasta sequence [CGGAACGATCTGCTGTCGGAGCTGCAGGTGCTGAAGTCGCTCGAACCGCACATCAACGTGGTGCGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGTACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGCACGTGGGATGGATTTTCTAACCTCCCGTGGGATCATACATCGTGACCTGGCCGCCCGTAACATTCTCATCACCGACGACCATACGTGCAAGGTGGCGGACTTTGGGTTCGCCCGCGACATCGTCACCTCCAAGGTGTACGAGCGGAAGAGCGAGGGCCGGTTGCCGATCCGCTGGATGGCGACCGAATCACTGTACGACAACATCTTCACCGTCAAGTCCGACATCTGGAGCTTCGGCATCCTGATGTGGGAGATCGTCACGCTCGGCTCCACGCCCTATCCGGGCATTGCGGCGGCGGATGTGATGCGCAAGGTGCGCGACGGCTACCGGCTCGAGAAGCCGGAACACTGCCGCCGGGAGCTGTACAACATCATGTTCTACTGCTGGGCGGCCGATCCGAATGAGCGGCCCGGCTTCCCGGAGGTGGTCGAGATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCCGACCACAACTACTACAATATGCTCAACATGAGCGGCGAGAAGCTGTGAACGGACTGGGGNTGCCCGANGCCCGGAAAGCCATTTGAT] [+] EMBL BX620022 [CGGAACGATCTGCTGTCGGAGCTGCAGGTGCTGAAGTCGCTCGAACCGCACATCAACGTGGTGCGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGTACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGCACGTGGGATGGATTTTCTAACCTCCCGTGGGATCATACATCGTGACCTGGCCGCCCGTAACATTCTCATCACCGACGACCATACGTGCAAGGTGGCGGACTTTGGGTTCGCCCGCGACATCGTCACCTCCAAGGTGTACGAGCGGAAGAGCGAGGGCCGGTTGCCGATCCGCTGGATGGCGACCGAATCACTGTACGACAACATCTTCACCGTCAAGTCCGACATCTGGAGCTTCGGCATCCTGATGTGGGAGATCGTCACGCTCGGCTCCACGCCCTATCCGGGCATTGCGGCGGCGGATGTGATGCGCAAGGTGCGCGACGGCTACCGGCTCGAGAAGCCGGAACACTGCCGCCGGGAGCTGTACAACATCATGTTCTAC ] [+] EMBL BX626543 [ TGCTGTCGGAGCTGCAGGTGCTGAAGTCGCTCGAACCGCACATCAACGTGGTGCGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGTACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGCACGTGGGATGGATTTTCTAACCTCCCGTGGGATCATACATCGTGACCTGGCCGCCCGTAACATTCTCATCACCGACGACCATACGTGCAAGGTGGCGGACTTTGGGTTCGCCCGCGACATCGTCACCTCCAAGGTGTACGAGCGGAAGAGCGAGGGCCGGTTGCCGATCCGCTGGATGGCGACCGAATCACTGTACGACAACATCTTCACCGTCAAGTCCGACATCTGGAGCTTCGGCATCCTGATGTGGGAGATCGTCACGCTCGGCTCCACGCCCTATCCGGGCATTGCGGCGGCGGATGTGATGCGCAAGGTGCGCGACGGCTACCGGCTCGAGAAGCCGGAACACTGCCGCCGGGAGCTGTACAACATCATGTTCTAC ] [+] EMBL BX622230 [ TCCAATCTTCGTGATACTGGAGTACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGCACGTGGGATGGATTTTCTAACCTCCCGTGGGATCATACATCGTGACCTGGCCGCCCGTAACATTCTCATCACCGACGACCATACGTGCAAGGTGGCGGACTTTGGGTTCGCCCGCGACATCGTCACCTCCAAGGTGTACGAGCGGAAGAGCGAGGGCCGGTTGCCGATCCGCTGGATGGCGACCGAATCACTGTACGACAACATCTTCACCGTCAAGTCCGACATCTGGAGCTTCGGCATCCTGATGTGGGAGATCGTCACGCTCGGCTCCACGCCCTATCCGGGCATTGCGGCGGCGGATGTGATGCGCAAGGTGCGCGACGGCTACCGGCTCGAGAAGCCGGAACACTGCCGCCGGGAGCTGTACAACATCATGTTCTACTGCTGGGCGGCCGATCCGAATGAGCGGCCCGGCTTCCCGGAGGTGGTCGAGATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCCGACCACAACTACTACAATATGCTCAACATGAGCGGCGAGAAGCTGTGAACGGACTGGGGNTGCCCGANGCCCGGAAAGCCATTTGAT] consensusID : consensus_6743#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGGGATTTGGCGTATTGGTGACGGCGGCCAAAACGCTCAAGGANAATGCGAGCGANGCGGAGCGGAACGATCTGCTGTCGGAGCTGCAGTGTGCTGAAGTCGCTCGAACCGCACATCAACGTGGTGCTGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGTACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGACACGTGGGATGGATTTTCTAACACTCCCGTGGGATCATACATCGTGACCTGGCCTGACCGTAACCATTCTCATCACACGACGACCATACGTGCAACGGTTGGCCGGACTTTTGGGGTTCCGCCGCGCACATCGTCCACCTCCAAGGTGTACGANACGGAAGAGCGAGGGCCGGTTGCCGATCCGCTGGATGGCAGACCGAATCACTGTACGACAACATCTTCACGTCAAGTCCGACATCTTGGAAGCCTTTCGGGACAATCCATTGNATAGTTGGGGCAGATCGTACAACGCTCGGACNCAANGCCCTATACGGNCATTTGCCGGCGGGCACGGGATGTGATTGCGCACAGGTTGCGCGACGGCTAACGGCTCGAGGA] [+] EMBL AL695990 [CCGGGATTTGGCGTATTGGTGACGGCGGCCAAAACGCTCAAGGANAATGCGAGCGANGCGGAGCGGAACGATCTGCTGTCGGAGCTGCAGTGTGCTGAAGTCGCTCGAACCGCACATCAACGTGGTGCTGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGTACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGACACGTGGGATGGATTTTCTAACACTCCCGTGGGATCATACATCGTGACCTGGCCTGACCGTAACCATTCTCATCACACGACGACCATACGTGCAACGGTTGGCCGGACTTTTGGGGTTCCGCCGCGCACATCGTCCACCTCCAAGGTGTACGANACGGAAGAGCGAGGGCCGGTTGCCGATCCGCTGGATGGCAGACCGAATCACTGTACGACAACATCTTCACGTCAAGTCCGACATCTTGGAAGCCTTTCGGGACAATCCATTGNATAGTTGGGGCAGATCGTACAACGCTCGGACNCAANGCCCTATACGGNCATTTGCCGGCGGGCACGGGATGTGATTGCGCACAGGTTGCGCGACGGCTAACGGCTCGAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6743#0 ------------------------------------------------------------ consensus_6743#1 ------------------------------------------------------------ consensus_6743#2 CCGGGATTTGGCGTATTGGTGACGGCGGCCAAAACGCTCAAGGANAATGCGAGCGANGCG 60 consensus_6743#0 ------------------------------------------------------------ consensus_6743#1 -----CGGAACGATCTGCTGTCGGAGCTGCAGGTGCTGAAGTCGCTCGAACCGCACATCA 55 consensus_6743#2 GAGCGGAACGATCTGCTGTCGGAGCTGCAGTGTGCTGAAGTCGCTCGAACCGCACATCAA 120 consensus_6743#0 ------------------------------------------------------------ consensus_6743#1 ACGTGGTGCGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGT 115 consensus_6743#2 CGTGGTGCTGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGT 180 consensus_6743#0 --GCC--CGAGGTTAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATG 56 consensus_6743#1 ACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATG 175 consensus_6743#2 ACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATG 240 * * ** ********************************************** consensus_6743#0 GAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACC 116 consensus_6743#1 GAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACC 235 consensus_6743#2 GAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACC 300 ************************************************************ consensus_6743#0 AAGTCG-CACGTGGGATGGATTTTCTAAC-CTCCCGTGGGATCATACATCGTGACCTGGC 174 consensus_6743#1 AAGTCG-CACGTGGGATGGATTTTCTAAC-CTCCCGTGGGATCATACATCGTGACCTGGC 293 consensus_6743#2 AAGTCGACACGTGGGATGGATTTTCTAACACTCCCGTGGGATCATACATCGTGACCTGGC 360 ****** ********************** ****************************** consensus_6743#0 C-GCCCGTAAC-ATTCTCATCAC-CGACGACCATACGTGCAATGGTGG--CGGACTTT-- 227 consensus_6743#1 C-GCCCGTAAC-ATTCTCATCAC-CGACGACCATACGTGCAA-GGTGG--CGGACTTT-- 345 consensus_6743#2 CTGACCGTAACCATTCTCATCACACGACGACCATACGTGCAACGGTTGGCCGGACTTTTG 420 * * ******* *********** ****************** *** * ******** consensus_6743#0 GGGTTCGCCCGCG-ACATCGTC-AC-TCCAAGGTGTACGAG-CGGAAGAGCGANGGCCGG 283 consensus_6743#1 GGGTTCGCCCGCG-ACATCGTC-ACCTCCAAGGTGTACGAG-CGGAAGAGCGAGGGCCGG 402 consensus_6743#2 GGGTTCCGCCGCGCACATCGTCCACCTCCAAGGTGTACGANACGGAAGAGCGAGGGCCGG 480 ****** ***** ******** ** ************** *********** ****** consensus_6743#0 TTGCCGATCCGCTGGATGGC-GACCGAATCACTGTACGACAACATCTTCACCGTCAAGTC 342 consensus_6743#1 TTGCCGATCCGCTGGATGGC-GACCGAATCACTGTACGACAACATCTTCACCGTCAAGTC 461 consensus_6743#2 TTGCCGATCCGCTGGATGGCAGACCGAATCACTGTACGACAACATCTTCAC-GTCAAGTC 539 ******************** ****************************** ******** consensus_6743#0 CGACATCT--GGAGCTTC----GGCATCCTGATGT--------GGGAGATCGTC--ACGC 386 consensus_6743#1 CGACATCT--GGAGCTTC----GGCATCCTGATGT--------GGGAGATCGTC--ACGC 505 consensus_6743#2 CGACATCTTGGAAGCCTTTCGGGACAATCCATTGNATAGTTGGGGCAGATCGTACAACGC 599 ******** * *** * * ** * ** ** ******* **** consensus_6743#0 TCGG-TCCA-CGCCCTATCCGGGCATTG--CGGCGGC----GGATGTGAT---GCGCAAG 435 consensus_6743#1 TCGGCTCCA-CGCCCTATCCGGGCATTG--CGGCGGC----GGATGTGAT---GCGCAAG 555 consensus_6743#2 TCGGACNCAANGCCCTATACGGNCATTTGCCGGCGGGCACGGGATGTGATTGCGCACAGG 659 **** ** ******* *** **** ****** ********* ** ** * consensus_6743#0 GTGCGCGACGGATACCGGCTCGAGAAGCCGGAACACTGCCGC-GGGAGCTGTACAACATC 494 consensus_6743#1 GTGCGCGACGGCTACCGGCTCGAGAAGCCGGAACACTGCCGCCGGGAGCTGTACAACATC 615 consensus_6743#2 TTGCGCGACGGCTAACGGCTCGAGGA---------------------------------- 685 ********** ** ********* * consensus_6743#0 ATGTTCTACTGCTGGGCGGC-GATCCGAATGAGCGGCC-GGCTTCC-GGAGGTGGTCGAG 551 consensus_6743#1 ATGTTCTACTGCTGGGCGGCCGATCCGAATGAGCGGCCCGGCTTCCCGGAGGTGGTCGAG 675 consensus_6743#2 ------------------------------------------------------------ consensus_6743#0 ATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCCGGA 611 consensus_6743#1 ATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCCG-A 734 consensus_6743#2 ------------------------------------------------------------ consensus_6743#0 CCACAA-TACTACAATATTGCTCAACNTGAGCGGCGAGNAAGCTGTGAACGGACTGGGGT 670 consensus_6743#1 CCACAACTACTACAATAT-GCTCAACATGAGCGGCGAGAA-GCTGTGAACGGACTGGGGN 792 consensus_6743#2 ------------------------------------------------------------ consensus_6743#0 TGCCGAAGGCCGGAAAGCCCATTTGATCAGCATACTCAAACGAACAAAGGCGATANAATT 730 consensus_6743#1 TGCCCGANGCCCGGAAAGCCATTTGAT--------------------------------- 819 consensus_6743#2 ------------------------------------------------------------ consensus_6743#0 GATNCTGCACAAACGCAACACAAGGTGTGCATGTGCTGCAAGTTATTGACTAGGTTGTGA 790 consensus_6743#1 ------------------------------------------------------------ consensus_6743#2 ------------------------------------------------------------ consensus_6743#0 TAAGATTGAGGTCTGATTCCGATCGTAGGAATGATCGTTTGCTCTTATTTATACGAGCTC 850 consensus_6743#1 ------------------------------------------------------------ consensus_6743#2 ------------------------------------------------------------ consensus_6743#0 GTCCGGGAGTTGTATAGCGGCAGAGAACAAATAGATAAAGTGTACCAGCAAATCCCGCTT 910 consensus_6743#1 ------------------------------------------------------------ consensus_6743#2 ------------------------------------------------------------ consensus_6743#0 CTAGTGTGTAGCAATAAGTACGATTGTAAGTTTCAGCTGGATTTAACCTGATTTTATTAA 970 consensus_6743#1 ------------------------------------------------------------ consensus_6743#2 ------------------------------------------------------------ consensus_6743#0 GCATTCATTTCTCTGTGTACATACATTGGCGTTGGATCAGATGATCTGCGTGCAACCCCC 1030 consensus_6743#1 ------------------------------------------------------------ consensus_6743#2 ------------------------------------------------------------ consensus_6743#0 CCCCCCCCTCAT 1042 consensus_6743#1 ------------ consensus_6743#2 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||