These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1190 fasta sequence [CCGCGGACGCGTGGGTTTTTGCGTAGAAATCAAGATTTTTGTTTCCAAACCCTTGTCAGTCATTGGATCATTCTGCACGACTTCCATTTCGTCTATTTCTCTTACTCTCCTCTTTCTATCTCTCTTTCTCTATCTCTCTATCATCTCTTCTCAAGCGAGTATGTCTACTTTAATTAGTCGTTAACAAAAAAACAAGAAAAACAGATCAATATCGTAGCTAGACCATTATCAAAAAACCGAATTAAAAAGCAAACTAAAAAAAATCACAAAAAACTCATCCTAGAATCACGATATGATCATCTTACCTTTCTACTAATCCATACTAAAAAAAAATGGAGTAAAAAGATGAATAAGAAAATGTGTGCAGGTTTAAGCAGCAGGAATGGAAGAATCGAATCGGTCATGAAAACATTATGTAAATAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATGGGATGCAAACAACAGTTATAACCAAGATAAAAAAGAAGCAAGAAGAAGTGGAAGAGGATTTTTTTTTTCGTTTCAAATAGGAACATAGAATCAAGCCCGCAAGAAAACAACCTACGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACACTCTGACCCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGACGTAACGA-AGAGCAGTATGAATATTACCACTAATCGTTGCAAACGAGTCGAGTTTTGGTATGCGAGTTGCATACTGT-TAGGCGGTATTGCTACCG-CTTTCGAAAGTGTATGCAATTTGAA-GCGCAAAAGTAGCTCCTTTTTATAGCACGCCTATCTGAATGGCATGTGGCATTATCAAGTTAAAATATGTTCTGCTTAGTTCACA-GCTGGAAACAGTTGCTGTATTTTTTATT-TTTTATTTACCAACATATTCTTACTCCA-TTTCCATGAGACACCACATGGCCACACATGGTCAGGCTACTTTAATGCTGTATCATCTCGCATAGAGAGCCGCCTGAACGGAAGGGGCTACTTAAACATTATTCCTTTCTCTCACAAGTCATTTCGATAAAGTCCAGAAACNAACAGTGTACATN] [+] EMBL BM609264 [CCGCGGACGCGTGGGTTTTTGCGTAGAAATCAAGATTTTTGTTTCCAAACCCTTGTCAGTCATTGGATCATTCTGCACGACTTCCATTTCGTCTATTTCTCTTACTCTCCTCTTTCTATCTCTCTTTCTCTATCTCTCTATCATCTCTTCTCAAGCGAGTATGTCTACTTTAATTAGTCGTTAACAAAAAAACAAGAAAAACAGATCAATATCGTAGCTAGACCATTATCAAAAAACCGAATTAAAAAGCAAACTAAAAAAAATCACAAAAAACTCATCCTAGAATCACGATATGATCATCTTACCTTTCTACTAATCCATACTAAAAAAAAATGGAGTAAAAAGATGAATAAGAAAATGTGTGCAGGTTTAAGCAGCAGGAATGGAAGAATCGAATCGGTCATGAAAACATTATGTAAATAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATGGGATGCAAACAACAGTTATAACCAAGATAAAAAAGAAGCAAGAAGAAGTGGAAGAGGATTTTTTTTTTCGTTTCAAATAGGAACATAGAATCAAGCCCGCAAGAAAACAACCTACGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCA ] [+] EMBL BM584667 [ ccgATCGAATCGGTCATGAAAACATTATGTAAATAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATGGGATGCAAACAACAGTTATAACCAAGATAAAAAAGAAGCAAGAAGAAGTGGAAGAGGATTTTTTTTTTCGTTTCAAATAGGAACATAGAATCAAGCCCGCAAGAAAACAACCTACGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACACTCTGACCCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGACGTAACGA AGAGCAGTATGAATATTACCACTAATCGTTGCAAACGAGTCGAGTTTTGGTATGCGAGTTGCATACTGT TAGGCGGTATTGCTACCG CTTTCGAAAGTGTATGCAATTTGAA GCGCAAAAGTAGCTCCTTTTTATAGCACGCCTATCTGAATGGCATGTGGCATTATCAAGTTAAAATATGTTCTGCTTAGTTCACA GCTGGAAACAGTTGCTGTATTTTTTATT TTTTATTTACCAACATATTCTTACTCCA TTTCCATGAGACAC ] [+] EMBL AL693312 [ ccgcggttaTTTC AATAGGAACATAGACTCAAG CCGCAAGAATACAACCTACGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACACTCTGA CCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGACGTAACGACAGAGCAGTATGAATATTACCACTAATCGTTGCAAACGAGTCGAG TTGGTATGCGAGTTGCATACTGTNTAGGCGGTATTGCTACCGNGTTTCGAAAGTGTATGCAATTTGAAGGCGCAAAAGTAGCTCCTTTTTATAGCACGCCTATCTGANTGGCATGTGGCATTATCAAGTTAAAATATGTTCTGCTTAGTTCACACGCTGGAAACAGTTGCTGTATTNCACATTATNTTATTTACAAACATCTTCTTACTCAATTTTCAATGAGCGACCACATGGCCACACATGGTCAGGCTACTTTAATGCTGTATCATCTCGCATAGAGAGCCGCCTGAACGGAAGGGGCTACTTAAACATTATTCCTTTCTCTCACAAGTCATTTCGATAAAGTCCAGAAACNAACAGTGTACATN] consensusID : consensus_6748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [AATCGCCCGCAGGTATTATCTTACCTTTCTACTAATCCNTACTAAAAAAAAATGGAGTAAAAAGATGAATAAGAAAATGTGTGCAGGTTTAAGCAGCAGGAATGGAAGAATCGAATCGGTCATGAAAACATTATGTAAATAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATGGGATGCAAACAACAGTTATAACCAAGATAAAAAAGAAGCAAGAAGAAGTGGAAGAGGATTTTTTTTTTCGTTTCAAATAGGAACATAGAATCAAGCCCGCAAGAAAACAACCTACGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACACTCTGACCCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGACGTAACGAAGAGCAGTATGAATATTACCACTAATCGTTGCCAAACGAGTCGACGTTTTGGTATGCGAGTTGCACTACTGTTAGGCGGTATTGCTACCCGCTTTCGAAAAGTGTAAT] [+] EMBL AL933460 [AATCGCCCGCAGGTATTATCTTACCTTTCTACTAATCCNTACTAAAAAAAAATGGAGTAAAAAGATGAATAAGAAAATGTGTGCAGGTTTAAGCAGCAGGAATGGAAGAATCGAATCGGTCATGAAAACATTATGTAAATAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATGGGATGCAAACAACAGTTATAACCAAGATAAAAAAGAAGCAAGAAGAAGTGGAAGAGGATTTTTTTTTTCGTTTCAAATAGGAACATAGAATCAAGCCCGCAAGAAAACAACCTACGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACACTCTGACCCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGACGTAACGAAGAGCAGTATGAATATTACCACTAATCGTTGCCAAACGAGTCGACGTTTTGGTATGCGAGTTGCACTACTGTTAGGCGGTATTGCTACCCGCTTTCGAAAAGTGTAAT] consensusID : consensus_6748#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [AACAACAGTTATAACCAAGATAAAAAAAGAAGCAAGAAAAAGAGGAAGAAGCAGATTTTTTTCTTTCGTTTCAAATAGCAACATAGAAATCATGCCCGCAAGAAAACAACCTACGCATAGATTCGTAAACACTAGTTAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGCACACGGGAACACTCTGTCCCTGATGTTGTGTTGCTTTCGGTGGTGTCGGACTAGCAATTGATATCACGCGAACGGAACGAAGAGCAGTATGAATTTCCACTAATCGTTGCAAACGAGTCGAGTTTTGGCATGCGAGTTGCATACTGTTAGGCGGCATTGCTACCGCTTTTCGAAGTGTATGCAATTTTGAAGCGCAAAGTAGCTGCTGTTTTTAGCAC] [+] EMBL BX605629 [AACAACAGTTATAACCAAGATAAAAAAAGAAGCAAGAAAAAGAGGAAGAAGCAGATTTTTTTCTTTCGTTTCAAATAGCAACATAGAAATCATGCCCGCAAGAAAACAACCTACGCATAGATTCGTAAACACTAGTTAACAAATTCTTCTACACGCACGACACATTCACTCGCAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGCACACGGGAACACTCTGTCCCTGATGTTGTGTTGCTTTCGGTGGTGTCGGACTAGCAATTGATATCACGCGAACGGAACGAAGAGCAGTATGAATTTCCACTAATCGTTGCAAACGAGTCGAGTTTTGGCATGCGAGTTGCATACTGTTAGGCGGCATTGCTACCGCTTTTCGAAGTGTATGCAATTTTGAAGCGCAAAGTAGCTGCTGTTTTTAGCAC] consensusID : consensus_6748#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [GCGTAGAAATCAAGATTTTTTGTTTCCAAACCCTTGTCAGTCATTGGATCATTCTGCACGACTTCCATTTCGTCTATTTCTCTCTTACTCTCTCTCTCTTTCTCTCTCTCTTTCTCTATCTCTCTTTATCATCTCTTCTCAAGCGAGTATGTCTACTTTAATTAGTCGTTAACAAAAAAAAAAAAAAAGGGCGGCGCTCGCCGGACGCGTGGGCGG] [-] EMBL BM623975 [GCGTAGAAATCAAGATTTTTTGTTTCCAAACCCTTGTCAGTCATTGGATCATTCTGCACGACTTCCATTTCGTCTATTTCTCTCTTACTCTCTCTCTCTTTCTCTCTCTCTTTCTCTATCTCTCTTTATCATCTCTTCTCAAGCGAGTATGTCTACTTTAATTAGTCGTTAACAAAAAAAAAAAAAAAGGGCGGCGCTCGCCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6748#1 ------------------------------------------------------------ consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 CCGCGGACGCGTGGGTTTTTGCGTAGAAATCAAGATTTTTGTTTCCAAACCCTTGTCAGT 60 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 ------------------------------------------------------------ consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 CATTGGATCATTCTGCACGACTTCCATTTCGTCTATTTCTCTTACTCTCCTCTTTCTATC 120 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 ------------------------------------------------------------ consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 TCTCTTTCTCTATCTCTCTATCATCTCTTCTCAAGCGAGTATGTCTACTTTAATTAGTCG 180 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 ------------------------------------------------------------ consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 TTAACAAAAAAACAAGAAAAACAGATCAATATCGTAGCTAGACCATTATCAAAAAACCGA 240 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 -----------------------------------------AATCGCCCGCAGGTATTAT 19 consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 ATTAAAAAGCAAACTAAAAAAAATCACAAAAAACTCATCCTAGAATCACGATATGATCAT 300 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 CTTACCTTTCTACTAATCCNTACTAAAAAAAAATGGAGTAAAAAGATGAATAAGAAAATG 79 consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 CTTACCTTTCTACTAATCCATACTAAAAAAAAATGGAGTAAAAAGATGAATAAGAAAATG 360 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 TGTGCAGGTTTAAGCAGCAGGAATGGAAGAATCGAATCGGTCATGAAAACATTATGTAAA 139 consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 TGTGCAGGTTTAAGCAGCAGGAATGGAAGAATCGAATCGGTCATGAAAACATTATGTAAA 420 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 TAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATG 199 consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 TAATTAACTTAAAATCAATCACCTAACCTGCTACCGTACCGAAACGGTAGCAGGCAAATG 480 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 GGATGCAAACAACAGTTATAACCAAGATAAAAAA-GAAGCAAGAAGAAGTGGAAGAGGA- 257 consensus_6748#2 -------AACAACAGTTATAACCAAGATAAAAAAAGAAGCAAGAAAAAGAGGAAGAAGCA 53 consensus_6748#0 GGATGCAAACAACAGTTATAACCAAGATAAAAAA-GAAGCAAGAAGAAGTGGAAGAGGA- 538 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 ---TTTTTTTTTTCGTTTCAAATAGGAACATAGAA-TCAAGCCCGCAAGAAAACAACCTA 313 consensus_6748#2 GATTTTTTTCTTTCGTTTCAAATAGCAACATAGAAATCATGCCCGCAAGAAAACAACCTA 113 consensus_6748#0 ---TTTTTTTTTTCGTTTCAAATAGGAACATAGAA-TCAAGCCCGCAAGAAAACAACCTA 594 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 CGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCG 373 consensus_6748#2 CGCATAGATTCGTAAACACTAGTTAA-CAAATTCTTCTACACGCACGACACATTCACTCG 172 consensus_6748#0 CGCATAGATTCTTAAACACTAGTTAAACAAATTCTTCTACACGCACGACACATTCACTCG 654 consensus_6748#3 -----------------GCGTAGAAATCAAGATTTTTTGTTTCCAAACCCTTGTCAGTCA 43 * ** *** * ** * ** * *** ** consensus_6748#1 CAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACAC 433 consensus_6748#2 CAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGCACACGGGAACAC 232 consensus_6748#0 CAAGACACTTTGTTGACGCCGTGCCAGTGTGCCAGACGGTGTGTTAGAACAAGGGAACAC 714 consensus_6748#3 TTGGAT-CATTCTGCACGAC-TTCCATTTCGTCTATTTCTCTCTTA-------------C 88 ** * ** * *** * * *** * * * * * *** * consensus_6748#1 TCTGACCCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGA 493 consensus_6748#2 TCTGTCCCTGATGTTGTGTTGCTTTCGGTGGTGTCGGACTAGCAATTGATATCACGCGAA 292 consensus_6748#0 TCTGACCCTAATTTTGTGTTGCTTTCGGTGGTGTCAGACGAACAATTGATATCACGCGGA 774 consensus_6748#3 TCTCTCTCTCTTTCTCTCTCTCTTTCTCTA-TCTCTCTTTATCATCTCTTCTCAAGCG-- 145 *** * ** * * * * ***** * * ** * ** * * *** *** consensus_6748#1 CGTAACGAAGAGCAGTATGAATATTACCACTAATCGTTGCCAAACGAGTCGACGTTTTGG 553 consensus_6748#2 CGGAACGAAGAGCAGTATGAATTT--CCACTAATCGTTGC-AAACGAGTCGA-GTTTTGG 348 consensus_6748#0 CGTAACGAAGAGCAGTATGAATATTACCACTAATCGTTGC-AAACGAGTCGA-GTTTTGG 832 consensus_6748#3 -------------AGTATGTCTACTTTAATTAGTCGTTAACAAAAAAAAAAA---AAAAG 189 ****** * * ** ***** *** * * * consensus_6748#1 TATGCGAGTTGCACTACTGTTAGGCGGTATTGCTACCCGCTTTCGAAAAGTGT--AAT-- 609 consensus_6748#2 CATGCGAGTTGCA-TACTGTTAGGCGGCATTGCTACCGCTTTTCGAAGTGTATGCAATTT 407 consensus_6748#0 TATGCGAGTTGCA-TACTGTTAGGCGGTATTGCTACCGCTTTCGAAAGTGTATGCAATTT 891 consensus_6748#3 GGCGGCGCTCGCCGGACGCGTGGGCGG--------------------------------- 216 * * ** ** * ***** consensus_6748#1 ------------------------------------------------------------ consensus_6748#2 TGAAGCGCAAAGTAGCTGCTGTTTTTAGCAC----------------------------- 438 consensus_6748#0 GAAGCGCAAAAGTAGCTCCTTTTTATAGCACGCCTATCTGAATGGCATGTGGCATTATCA 951 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 ------------------------------------------------------------ consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 AGTTAAAATATGTTCTGCTTAGTTCACAGCTGGAAACAGTTGCTGTATTTTTTATTTTTT 1011 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 ------------------------------------------------------------ consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 ATTTACCAACATATTCTTACTCCATTTCCATGAGACACCACATGGCCACACATGGTCAGG 1071 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 ------------------------------------------------------------ consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 CTACTTTAATGCTGTATCATCTCGCATAGAGAGCCGCCTGAACGGAAGGGGCTACTTAAA 1131 consensus_6748#3 ------------------------------------------------------------ consensus_6748#1 ----------------------------------------------------------- consensus_6748#2 ----------------------------------------------------------- consensus_6748#0 CATTATTCCTTTCTCTCACAAGTCATTTCGATAAAGTCCAGAAACNAACAGTGTACATN 1190 consensus_6748#3 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||