These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6751#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [TTTACACTTTTCTGTCACATTTTGCATTACTTTTCTTTTTTTTTAATTAACCCATTTTTTTAATTTTTTCAGTCTTTTTGTTATTGTTTTGCTAGAAAAAGATATGATGAATTTTGCATTGGAGAAGATTGAATTACTAACCATGAATTGGCATTTACATAATATTGCTTCCTTTCTTCTTCTTCTTTTTTTGCTCATAATAAATTGCGTAGTTGCTATTCTGCAGATGCGCGGCTTGCTGTGTGTGTGTGTGTATGTGTGAGGTGGTGCAGTGAAGTCGTGTTAGTTAGAAAGAAGAAGAAGAAGACGAAGAACACAGGTGCAGGATTCTAAGCTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAAAGGAAGAAGAAAGAAAAGCAAGAAAGAAAGAAACAAAGGGGGGGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTAAACAAACGTCATCACCATCATCTTCAAC] [+] EMBL BX624445 [TTTACACTTTTCTGTCACATTTTGCATTACTTTTCTTTTTTTTTAATTAACCCATTTTTTTAATTTTTTCAGTCTTTTTGTTATTGTTTTGCTAGAAAAAGATATGATGAATTTTGCATTGGAGAAGATTGAATTACTAACCATGAATTGGCATTTACATAATATTGCTTCCTTTCTTCTTCTTCTTTTTTTGCTCATAATAAATTGCGTAGTTGCTATTCTGCAGATGCGCGGCTTGCTGTGTGTGTGTGTGTATGTGTGAGGTGGTGCAGTGAAGTCGTGTTAGTTAGAAAGAAGAAGAAGAAGACGAAGAACACAGGTGCAGGATTCTAAGCTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAAAGGAAGAAGAAAGAAAAGCAAGAAAGAAAGAAACAAAGGGGGGGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTAAACAAACGTCATCACCATCATCTTCAAC] consensusID : consensus_6751#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 510 fasta sequence [CCGTGCCGGACGTGCATGGTGCGTGCGCGTGTATGTGTGCCCGGGAACGTAAGCAAGCGAAAGTCGTGTGTGCGCGTGCGTTTCGGCAAATTCCTGCAAAAAAAAAA--ACACACACACACAAGCGTGACAGTTTGCGCACAGTTCTACCGAGCGCGTGCGCCCGTTTGTGTGTATTTCGGCGAAAGCAAAGGTGTTGGTGTGCACTATTAGCTGATGGCAGACGAACGACCGTTACTTTGCCAAAACACGTGAACACAGGTGCAGGATTCTAAGCTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAAAGGAAGAAGAAAGAAAAGCAAGAAAGAAAGAAACAAAGGGGGGGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTA] [+] EMBL BM641221 [CCGTGCCGGACGTGCATGGTGCGTGCGCGTGTATGTGTGCCCGGGAACGTAAGCAAGCGAAAGTCGTGTGTGCGCGTGCGTTTCGGCAAATTCCTGCAAAAAAAAAA ACACACACACACAAGCGTGACAGTTTGCGCACAGTTCTACCGAGCGCGTGCGCCCGTTTGTGTGTATTTCGGCGAAAGCAAAGGTGTTGGTGTGCACTATTAGCTGATGGCAGACGAACGACCGTTACTTTGCCAAAACACGTGAACACAGGTGCAGGATTCTAAGCTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAAAGGAAGAAGAAAGAAAAGCAAGAAAGAAAGAAACAAAGGGGGGGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTA] [+] EMBL BX607025 [ CCGGACGTGCATGGTGCGTGCGCGTGTATGTGTGCCCGGGAACGTAAGCAAGCGAAAGTCGTGTGTGCGCGCGCGTTTCGGCAAATTCCTGCAAAAAAAAAAACACACACACACACAAGCGTGACAGTTTGCGCACAGTTCTACCGAGCGCGTGCGCCCGTTTGTGTGTATTTCGGCGAAAGCAAAGGTGTTGGTGTGCACT ] consensusID : consensus_6751#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [AATCGGCCGAGGCGNTAGGCGTGCGCCCGTTTGTGTGTATTTCGGCGAAAGCAAATGGTGTTGGTGTGCACTATTAGCTGATGGCAGACGAACGACCGTTACTTTGCCAAAACACGTGAACACAGGTGCAGGTGCGTTTATGTGTGTTTGTCTGTGTTGGTTTGTGTGAGTGTGTGGGATTGTTGTTCTAAGTAGAGGATGGGCGGACGGAAAATCGATAGCGCAGCCGAAGGATTCTAAGCTGGCAAGAGTACGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAACAGGAAGAACGAAAGAAAAGCAAGAAACGAAAGAAACAAAGGGGGGAGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTAAACAAACTTCATCACCATCAT] [+] EMBL AL696727 [AATCGGCCGAGGCGNTAGGCGTGCGCCCGTTTGTGTGTATTTCGGCGAAAGCAAATGGTGTTGGTGTGCACTATTAGCTGATGGCAGACGAACGACCGTTACTTTGCCAAAACACGTGAACACAGGTGCAGGTGCGTTTATGTGTGTTTGTCTGTGTTGGTTTGTGTGAGTGTGTGGGATTGTTGTTCTAAGTAGAGGATGGGCGGACGGAAAATCGATAGCGCAGCCGAAGGATTCTAAGCTGGCAAGAGTACGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAACAGGAAGAACGAAAGAAAAGCAAGAAACGAAAGAAACAAAGGGGGGAGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTAAACAAACTTCATCACCATCAT] consensusID : consensus_6751#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [GGCCNAGGGGACGGTGCGAGAACGGCCGACAAAGGCGGCCGGCTGCAACCAACCGGATTCTAAGCTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAAAGGAAGAAGAAAGAAAAGCAAGAAAGAAAGAAACAAAGGGGGGAGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTAAACAAACGTCATCACCATCATCTTCAACCTGTGCGCTGCCCCCCCCCCCCCCGGCAGCTTCCCAACTCCCATCCCGGGAGGATGGAGGCGACGAGCATCGATCAACGCCGAGGCAGCGTGTCG] [+] EMBL AL934979 [GGCCNAGGGGACGGTGCGAGAACGGCCGACAAAGGCGGCCGGCTGCAACCAACCGGATTCTAAGCTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCAGCAGTGAACAAGTGAAGCTAGAAGAAAGGAAGAAGAAAGAAAAGCAAGAAAGAAAGAAACAAAGGGGGGAGAAAAGATTCGTAACAAGTGTCGCTCAGCTTCTGTCGTGGCTTCCACATTACACATATCACGGCGACAACGGTGTGCGAGATAGTAAACAAACGTCATCACCATCATCTTCAACCTGTGCGCTGCCCCCCCCCCCCCCGGCAGCTTCCCAACTCCCATCCCGGGAGGATGGAGGCGACGAGCATCGATCAACGCCGAGGCAGCGTGTCG] consensusID : consensus_6751#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [GCCCCCAGGGTTATGTCGAGAACGGCCGACAANGGCGGCGNCTGCAATCCAACCGGATTCTAACTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCATGCTAGTTGAACAAGTGACAGCTAGAAGACCAGGAAGAAGAAAGAAAAGCAAGAAAGAANGAAACAAAGGGGGGNGAAAAGATTCGTAACAAGGTGTCGGCTCAGCATTCTGTCGAAGGCGTTCCACATTACACATATCAGCGGCGACAACGGTGTGCCGACGATAGTAAACAGAAGTGTCGATCACACATCATCATTCAACCTGTGCGCATGTCCCCACCCTGNTCGCCCGGAGCCTTCCCAACTCCCATCCCGGGAGGATGGAGCGAGAGCATCG] [+] EMBL AL693227 [GCCCCCAGGGTTATGTCGAGAACGGCCGACAANGGCGGCGNCTGCAATCCAACCGGATTCTAACTGGCAAGAGTAGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGAGTGCGTGCAGTGAACAATCCATGCTAGTTGAACAAGTGACAGCTAGAAGACCAGGAAGAAGAAAGAAAAGCAAGAAAGAANGAAACAAAGGGGGGNGAAAAGATTCGTAACAAGGTGTCGGCTCAGCATTCTGTCGAAGGCGTTCCACATTACACATATCAGCGGCGACAACGGTGTGCCGACGATAGTAAACAGAAGTGTCGATCACACATCATCATTCAACCTGTGCGCATGTCCCCACCCTGNTCGCCCGGAGCCTTCCCAACTCCCATCCCGGGAGGATGGAGCGAGAGCATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6751#3 ------------------------------------------------------------ consensus_6751#4 ------------------------------------------------------------ consensus_6751#0 TTTACACTTTTCTGTCACATTTTGCATTACTTTTCTTTTTTTTTAATTAACCCATTTTTT 60 consensus_6751#1 ------------------------------------------------------------ consensus_6751#2 ------------------------------------------------------------ consensus_6751#3 ------------------------------------------------------------ consensus_6751#4 ------------------------------------------------------------ consensus_6751#0 TAATTTTTTCAGTCTTTTTGTTATTGTTTTGCTAGAAAAAGATATGATGAATTTTGCATT 120 consensus_6751#1 -----------------CCGTGCCGGACGTGCATGGTGCGTGCGCGTGTATGTGTGCCCG 43 consensus_6751#2 -----------------AATCGGCCGAGGCGNTAGGCGTGCGCCCGTTTGTGTGTATTTC 43 consensus_6751#3 ------------------------------------------------------------ consensus_6751#4 ------------------------------------------------------------ consensus_6751#0 GGAGAAGATTGAATTACTAACCATGAATTGGCATTTACATAATATTGCTTCCTTTCTTCT 180 consensus_6751#1 GGAACGTAAGCAAGCGAAAGTCGTGTGTGCGCGTGCGTTTCGGCAAATTCCTGCAAAAAA 103 consensus_6751#2 GG--CGAAAGCAAATGGTGTTGGTGTGCAC-------TATTAGCTGATG---GCAGACGA 91 consensus_6751#3 ------------------------------------------------------------ consensus_6751#4 ------------------------------------------------------------ consensus_6751#0 TCTTCTTTTTTTGCTCATAATAAATTGCGTAGTTGCTATTCTGC-AGATGCGCGGCTTGC 239 consensus_6751#1 AAAAACACACACACACAAGCGTGACAGTTTGCGCACAGTTCTACCGAGCGCGTGCGCCCG 163 consensus_6751#2 ACGACCGT---TACTTTGCCAAAACA-CGTGAACACAGGTGCAG-GTGCGTTTATGTGTG 146 consensus_6751#3 ----------------------------GGCCNAGGGGACGGTGCGA--------GAACG 24 consensus_6751#4 ----------------------------GCCCCCAGGGTTATGTCGA--------GAACG 24 consensus_6751#0 TGTGTGTGTGTGTGTATGTGTGAGGTGGTGCAGTGAAGTCGTGTTAGTT------AGAAA 293 consensus_6751#1 TTTGTGTGTATTTCGGCGAAAGCAAAGGTGTTGGTGTGCACTATTAGCTGATGGCAGACG 223 consensus_6751#2 TTTGTCTGTGTT--GGTTTGTGTGAGTGTGTGGGATTGTTGTTCTAA---GTAGAGGATG 201 * * consensus_6751#3 GCCGACAAA---------GGCGGCCGGCTGCAA-CCAACCGGATTCTAAGCTGGCAAGAG 74 consensus_6751#4 GCCGACAAN---------GGCGGC-GNCTGCAATCCAACCGGATTCTAA-CTGGCAAGAG 73 consensus_6751#0 GAAGAAGAA---------GAAGACGAAGAACACAGGTGCAGGATTCTAAGCTGGCAAGAG 344 consensus_6751#1 AACGACCGTTACTTTGCCAAAACACGTGAACACAGGTGCAGGATTCTAAGCTGGCAAGAG 283 consensus_6751#2 GGCGGACG----------GAAAATCGATAGCGCAGCCGAAGGATTCTAAGCTGGCAAGAG 251 * * ********* ********** consensus_6751#3 TA-GAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTG------AGT 127 consensus_6751#4 TA-GAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTG------AGT 126 consensus_6751#0 TA-GAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTGTGTGTGAGT 403 consensus_6751#1 TA-GAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTG------AGT 336 consensus_6751#2 TACGAAAGTACGTGTGCAATAACGAGGAAAGTGGATGTGCGTGTGTGTGTG------AGT 305 ** ************************************************ *** consensus_6751#3 GCGTGCAGTGAACAATCCA-GCAG--TGAACAAGTGA-AGCTAGAAGAA-AGGAAGAA-G 181 consensus_6751#4 GCGTGCAGTGAACAATCCATGCTAGTTGAACAAGTGACAGCTAGAAGACCAGGAAGAA-G 185 consensus_6751#0 GCGTGCAGTGAACAATCCA-GCAG--TGAACAAGTGA-AGCTAGAAGAA-AGGAAGAA-G 457 consensus_6751#1 GCGTGCAGTGAACAATCCA-GCAG--TGAACAAGTGA-AGCTAGAAGAA-AGGAAGAA-G 390 consensus_6751#2 GCGTGCAGTGAACAATCCA-GCAG--TGAACAAGTGA-AGCTAGAAGAACAGGAAGAACG 361 ******************* ** *********** ********** ******** * consensus_6751#3 AAAGAAAAGCAAGAAA-GAAAGAAACAAAGGGGGGAGAAAAGATTCGTAACAAG-TGTCG 239 consensus_6751#4 AAAGAAAAGCAAGAAA-GAANGAAACAAAGGGGGGNGAAAAGATTCGTAACAAGGTGTCG 244 consensus_6751#0 AAAGAAAAGCAAGAAA-GAAAGAAACAAAGGGGGG-GAAAAGATTCGTAACAAG-TGTCG 514 consensus_6751#1 AAAGAAAAGCAAGAAA-GAAAGAAACAAAGGGGGG-GAAAAGATTCGTAACAAG-TGTCG 447 consensus_6751#2 AAAGAAAAGCAAGAAACGAAAGAAACAAAGGGGGGAGAAAAGATTCGTAACAAG-TGTCG 420 **************** *** ************** ****************** ***** consensus_6751#3 -CTCAGC-TTCTGTCGTGGC--TTCCACATTACACATATCA-CGGCGACAACGGTGTGCG 294 consensus_6751#4 GCTCAGCATTCTGTCGAAGGCGTTCCACATTACACATATCAGCGGCGACAACGGTGTGCC 304 consensus_6751#0 -CTCAGC-TTCTGTCGTGGC--TTCCACATTACACATATCA-CGGCGACAACGGTGTGCG 569 consensus_6751#1 -CTCAGC-TTCTGTCGTGGC--TTCCACATTACACATATCA-CGGCGACAACGGTGTGCG 502 consensus_6751#2 -CTCAGC-TTCTGTCGTGGC--TTCCACATTACACATATCA-CGGCGACAACGGTGTGCG 475 ****** ******** * ******************* ***************** consensus_6751#3 A--GATAGTAAACAAACGTC---ATCAC-CATCATC-TTCAACCTGTGCGC-TGCCCCCC 346 consensus_6751#4 GACGATAGTAAACAGAAGTGTCGATCACACATCATCATTCAACCTGTGCGCATGTCCCCA 364 consensus_6751#0 A--GATAGTAAACAAACGTC---ATCAC-CATCATC-TTCAAC----------------- 605 consensus_6751#1 A--GATAGTA-------------------------------------------------- 510 consensus_6751#2 A--GATAGTAAACAAACTTCATCACCATCAT----------------------------- 504 ******* consensus_6751#3 CCC----CCCCCGGCAGCTTCCCAACTCCCATCCCGGGAGGATGGAGGCGACGAGCATCG 402 consensus_6751#4 CCCTGNTCGCCCGGAGCCTTCCCAACTCCCATCCCGGGAGGATGGAG-CGA-GAGCATCG 422 consensus_6751#0 ------------------------------------------------------------ consensus_6751#1 ------------------------------------------------------------ consensus_6751#2 ------------------------------------------------------------ consensus_6751#3 ATCAACGCCGAGGCAGCGTGTCG 425 consensus_6751#4 ----------------------- consensus_6751#0 ----------------------- consensus_6751#1 ----------------------- consensus_6751#2 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||