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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6755#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 960 fasta sequence
[GCATTCGG-GTTA-CGTGACACAACATACAACACCAAAATCAACATGGCGGACGCTGCTCCAGCCCGTGGTGGATTTAGAGGAGGATTCGGCTCGCGTGGCGGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGCCGTGGCCGTGGACGCGGACGCGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGTACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCGTTCGTTGCCATCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGG-CAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACCGGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCACCCGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCCGCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAACAAGACCCCGTACCAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACCGGTCAGCGTGTCATCGAGATGTAAGGATTTTCTCCTCGCATCTTAATTGACGTGCAAAGGCGCTGGTGCGTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAAGGCAAGCAATAAAATTGCTACTCGTTTTGGCAACGAAACGACAACAACACAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCGGGCCCG]
[+] EMBL CNS08FPD [GCATTCGGCGTTA CGTGACACAACATACAACACCAAAATCAACATGGCGGACGCTGCTCCAGCCCGTGGTGGATTTAGAGGAGGATTCGGCTCGCGTGGCGGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGCCGTGGCCGTGGACGCGGACGCGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGTACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCGTTCGTTGCCATCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGGCCAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACCGGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCACCCGTGGTTCCACGACCACGCT ]
[+] EMBL CNS09P97 [ TCGG GTTACCGTGACACAACATACAACACCAAAATCAACATGGCGGACGCTGCTCCAGCCCGTGGTGGATTTAGAGGAGGATTCGGCTCGCGTGGCGGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGCCGTGGCCGTGGACGCGGACGCGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGTACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCGTTCGTTGCCATCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGG CAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACCGGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCACCCGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCCGCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAACAAGACCCCGTACCAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACCGGTCAGCGTGTCATCGAGATGTAAGGATTTTCTCCTCGCATCTTAATTGACGTGCAAAGGCGCTGGTGCGTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAAGGCAAGCAATAAAATTGCTACTCGTTTTGGCAACGAAACGACAACAACACAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCGGGCCCG]
[+] EMBL CNS08FR9 [ ACATACAACACCAAAATCAACATGGCGGACGCTGCTCCAGCCCGTGGTGGATTTAGAGGAGGATTCGGCTCGCGTGGCGGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGCCGTGGCCGTGGACGCGGACGCGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGTACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCGTTCGTTGCCATCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGG CAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACCGGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCAAAAGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCCGCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAACAAGACCCCGTACCAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACCGGTCAGCGTGTCATCGAGATGTAAGGATTTTCTCCTCGCATCTTAATTGACGTGCAAAGGCGCTGGTGCGTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAACGCAA ]
[-] EMBL CNS08FRA [ GATTTAGAGGAGGATTCGGCTCGCGTGG GGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGCCGTGGCCGTGGACGCGGACGCGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGAACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGTTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCGTTCGTTGCCATCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGG CAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGG TCCGCGTGGTACCGGCATCGTGTCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCACCCGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCCGCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAACAAGACCCCGTACCAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACCGGTCAGCGTGTCATCGAGATGTAAGGATTTTCTCCTCGCATCTTAATTGACGTGCAAAGGCGCTGGTGCGTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAAGGCAAGCAATAAAATTGCTACTCGTT ]
consensusID : consensus_6755#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTCCACATCAAGGTGCCGAAGCTGGCCAAGGACTACGCGAAGCTGGAGGCGACCGCCGACAAGTACAACCTGCAGGTGCGCGGTACCCGCGGTGAGCACTCCGAGGCCGAGGGCGGCATCTACGACATCTCCAACAAGCGCCGCATGGGACTGACCGAGTTCCAGGCCGTCAAGGAGATGTACGATGGCATTTCGGAGATCATCAAGATCGAGAAGTCGCTGTAAGGTGTGGAGGAATGGAGGATGAGGTGCTGATGATTGCTGCATCACACTTACACCACTTCGCTTTTCCCAAACCGACACAAGCACACACAACACCGATTGATGATGATAGACCCCCCTTCCCCCTCAAACCCTCGTCTGATGGTGATATGGATGGATTGGATGGATATGTGATTCCAACCGCTACTGAACTCAATACCCACTGAACAAACCAACACACCAACCCGCCCGCTCCCGCCGCCCCGTTTACCGAGCATATTCTATCGCTCGTTCGCGAATTCGTTTCTCTTCCCACCCGGCGAACGGAACTGTGCACTGTGTGCTTC]
[+] EMBL BM629731 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCCACATCAAGGTGCCGAAGCTGGCCAAGGACTACGCGAAGCTGGAGGCGACCGCCGACAAGTACAACCTGCAGGTGCGCGGTACCCGCGGTGAGCACTCCGAGGCCGAGGGCGGCATCTACGACATCTCCAACAAGCGCCGCATGGGACTGACCGAGTTCCAGGCCGTCAAGGAGATGTACGATGGCATTTCGGAGATCATCAAGATCGAGAAGTCGCTGTAAGGTGTGGAGGAATGGAGGATGAGGTGCTGATGATTGCTGCATCACACTTACACCACTTCGCTTTTCCCAAACCGACACAAGCACACACAACACCGATTGATGATGATAGACCCCCCTTCCCCCTCAAACCCTCGTCTGATGGTGATATGGATGGATTGGATGGATATGTGATTCCAACCGCTACTGAACTCAATACCCACTGAACAAACCAACACACCAACCCGCCCGCTCCCGCCGCCCCGTTTACCGAGCATATTCTATCGCTCGTTCGCGAATTCGTTTCTCTTCCCACCCGGCGAACGGAACTGTGCACTGTGTGCTTC]
consensusID : consensus_6755#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[CCGCCCACGCGTCCGGTGACACAACATACAACATCCAAAATCAACATGGCCGGACGCTGCTCCATCCCGTGGTGGATTTAGAGGAGGATTCGGCTCGCGTGGCGGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGACGTGGCCGTGGACGCGGACGGGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGTACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCC]
[+] EMBL BM629111 [CCGCCCACGCGTCCGGTGACACAACATACAACATCCAAAATCAACATGGCCGGACGCTGCTCCATCCCGTGGTGGATTTAGAGGAGGATTCGGCTCGCGTGGCGGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGACGTGGCCGTGGACGCGGACGGGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGTACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6755#0 --GCATTCGGGTTACGTGACACAACATACAACA-CCAAAATCAACATGGC-GGACGCTGC 56
consensus_6755#2 CCGCCCACGCGTCCGGTGACACAACATACAACATCCAAAATCAACATGGCCGGACGCTGC 60
consensus_6755#1 CCGCCCACGCGTCCGCCCACGCGTC------CGGTCCACATCAAGGTGCC--GAAGCTGG 52
** ** ** ** * * * * * ***** ** * ** ****
consensus_6755#0 TCCAGCCCGTGGTGGATTTAGAGGAGGAT-TCGGCTCGCGTGGCGGTGCCCGCG-GCGGT 114
consensus_6755#2 TCCATCCCGTGGTGGATTTAGAGGAGGAT-TCGGCTCGCGTGGCGGTGCCCGCG-GCGGT 118
consensus_6755#1 CCAAGGACTACGCGAAGCTGGAGGCGACCGCCGACAAGTACAACC-TGCAGGTGCGCGGT 111
* * * * * * * **** * ** * * * *** * * *****
consensus_6755#0 GGTCGTGGTGGACGT-----GGTCGCGGCCGTGGCCGTGGACGCGGACGC--GGCGGCAA 167
consensus_6755#2 GGTCGTGGTGGACGT-----GGTCGCGGACGTGGCCGTGGACGCGGACGG--GGCGGCAA 171
consensus_6755#1 ACCCGCGGTGAGCACTCCGAGGCCGAGGGCGGCATCTACGACATCTCCAACAAGCGCCGC 171
** **** * ** ** ** ** * *** * *** *
consensus_6755#0 GGAGGACTCGAAGGAATGGGTGCCGGTGACGAA--GCTGGGCCGCCTGGTGAAGGACGGC 225
consensus_6755#2 GGAGGACTCGAAGGAATGGGTGCCGGTGACGAA--GCTGGGCCGCCTGGTGAAGGACGGC 229
consensus_6755#1 ATGGGACTGACCGAGTTCCAGGCCGTCAAGGAGATGTACGATGGCATTTCGGAGATCATC 231
***** * * **** * ** * * ** * * ** * *
consensus_6755#0 AAGATCCGCA---CGCTGGAGGAAATCTATCTGTACTCGCTCCCG-ATCAAAGAGTTCGA 281
consensus_6755#2 AAGATCCGCA---CGCTGGAGGAAATCTATCTGTACTCGCTCCCG-ATCAAAGAGTTCGA 285
consensus_6755#1 AAGATCGAGAAGTCGCTGTAAGGTGTGGAGGAATGGAGGATGAGGTGCTGATGATTGCTG 291
****** * ***** * * * * * * * * * ** * *
consensus_6755#0 GATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATG-AGGTGCTGAAGATCATGCCCG 340
consensus_6755#2 GATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATG-AGGTGCTGAAGATCATGCCCG 344
consensus_6755#1 CATCACACTTACACCACTTCGCTTTTCCCAAACCGACACAAGCACACACAACACCGATTG 351
**** * ** * * * * ** * * * * * * *
consensus_6755#0 TCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCGTTCGTTGCCATCGGTT 400
consensus_6755#2 TCCAGAAGCAGACCCGTGCCGGTCAGCGTACCC--------------------------- 377
consensus_6755#1 ATGATGA-TAGACCCCCCTTCCCCCTCAAACCCTCGTCT-GATGGTGATATGGATGGATT 409
* * ****** * * ****
consensus_6755#0 GTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGC 460
consensus_6755#2 ------------------------------------------------------------
consensus_6755#1 GGATGGATATGTGATTCCAACCGCTACTGAACTCAATACCCACTGAACAAACCAACACAC 469
consensus_6755#0 AAGGTCAGCGGCAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACC 520
consensus_6755#2 ------------------------------------------------------------
consensus_6755#1 CAACCCGCCCGCTCCCGCCGCCCCGTTTACCGAGCATATTCTATCGCTCGTTCGCGAATT 529
consensus_6755#0 GGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGC 580
consensus_6755#2 ------------------------------------------------------------
consensus_6755#1 CGTTTCTCTTCCCACCCGGCGAACGGAACTGTGCACTGTGTGCTTC-------------- 575
consensus_6755#0 TATACCACCACCCGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCC 640
consensus_6755#2 ------------------------------------------------------------
consensus_6755#1 ------------------------------------------------------------
consensus_6755#0 GCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAAC 700
consensus_6755#2 ------------------------------------------------------------
consensus_6755#1 ------------------------------------------------------------
consensus_6755#0 AAGACCCCGTACCAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACCGGTCAGCGT 760
consensus_6755#2 ------------------------------------------------------------
consensus_6755#1 ------------------------------------------------------------
consensus_6755#0 GTCATCGAGATGTAAGGATTTTCTCCTCGCATCTTAATTGACGTGCAAAGGCGCTGGTGC 820
consensus_6755#2 ------------------------------------------------------------
consensus_6755#1 ------------------------------------------------------------
consensus_6755#0 GTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAAGGCAAGCAATAAAATT 880
consensus_6755#2 ------------------------------------------------------------
consensus_6755#1 ------------------------------------------------------------
consensus_6755#0 GCTACTCGTTTTGGCAACGAAACGACAACAACACAAAAAAAAAAAAAAAAAAGGCCACAT 940
consensus_6755#2 ------------------------------------------------------------
consensus_6755#1 ------------------------------------------------------------
consensus_6755#0 GTGCCCGAGCTGCGGGCCCG 960
consensus_6755#2 --------------------
consensus_6755#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||