These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6763#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1364 fasta sequence [CCGAAAACATTGTGCAGGCTCCACCCGCGGAGAAAAGCTCCTGGCGCCGAAAACCCGAGGATGATGCTACTCTGCCGAAGAAGGATGGCGAACAATGGAATGGAGATAATATGACAGGATATTTGAAGCAAATGTTACGCATCGACGAAAAAGCTGGAAGCGAAAAGGGGAGCGAGAAAAGTGTAAACCCTGCAAGTATTGCCGTGCCCGCCCCAGCTAGTCTGCCGAAACCACCGATTCAGTGGCAAACGCAAGCCGCTTCAAAGAGTCCGGCAAAGGGACCGACAGCGGTTCCTTTGACGGAAGTAAATGAAACAACGAAAAATAACACTAACAACACAGCGAACCAATTTATTGCACAATATATGAAAACTCCACAGCCCCAAATGGCTTCCATGGCACAACCGATGCACCTCGGCTTCAGACCGATGCTCCGTCCGCCAACGCACACGTTTGATCCGCGACATCCACAGCCACAGTTCGGGCCTATGATTATGCAACCAGTATTTATGCAGACGGGTACGAACATGCACCAGTCCATGGGAGCATTCCAGCAGCCAGCTATGCCACCATTTCCCCAGAACATGCCAATGCGACCACCGGTACCGTTCCCTAACAGAATGGAAAACAGTGTACCGTTTCCGCCACACGGGCAT-GGATTGAACAATGCGCCAGCAAAGATGATGGTACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACATCAACAGCAACATCATCAACAGAAGCAACAGCATCAAGTACAACCACACTATCCCTCCAACTGGGGCCCAAAAGGGCCGCAGCATTTGTCATACAACAAGAACAATCCTGCCGGTAATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCAGGAGGAGGAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGACTTTGATTAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAACTACCGGCGGTTTTAATGAG-AAAATGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAGCGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTC-AAAGTCGGACACCAAGC-ACTAAAAAATAAGCACAACAGCAACACGTCGACGGCAAAGAAGCAGTCCACGGTGGTGACGGCTGTGAAGGACCAGGATGGTCAGATTGAGGACACTTCTGTCGTGAAGCAAACTCCTTCTAAATCCAAGCCGAAGACACGCATTGCCGCACGGTTCGGAGTTGCTTCCGAGGGCTAAGCCATGCCGCCAAAAGGACGTTAGTGTTAGTATGTATGTACGTAAACCCCGTAT] [+] EMBL BM636524 [CCGAAAACATTGTGCAGGCTCCACCCGCGGAGAAAAGCTCCTGGCGCCGAAAACCCGAGGATGATGCTACTCTGCCGAAGAAGGATGGCGAACAATGGAATGGAGATAATATGACAGGATATTTGAAGCAAATGTTACGCATCGACGAAAAAGCTGGAAGCGAAAAGGGGAGCGAGAAAAGTGTAAACCCTGCAAGTATTGCCGTGCCCGCCCCAGCTAGTCTGCCGAAACCACCGATTCAGTGGCAAACGCAAGCCGCTTCAAAGAGTCCGGCAAAGGGACCGACAGCGGTTCCTTTGACGGAAGTAAATGAAACAACGAAAAATAACACTAACAACACAGCGAACCAATTTATTGCACAATATATGAAAACTCCACAGCCCCAAATGGCTTCCATGGCACAACCGATGCACCTCGGCTTCAGACCGATGCTCCGTCCGCCAACGCACACGTTTGATCCGCGACATCCACAGCCACAGTTCGGGCCTATGATTATGCAACCAGTATTTATGCAGACGGGTACGAACATGCACCAGTCCATGGGAGCATTCCAGCAGCCAGCTATGCCACCATTTCCCCAGAACATGCCAATGCGACCACCGGTACCGTTCCCTAACAGAATGGAAAACAGTGTACCGTTTCCGCCACACGGGCATGGGATTGA ] [+] EMBL BX606729 [ AAACCACCGATTCAGTGGCAAACGCAAGCCGCTTCAAAGAGTCCGGCAAAGGGACCGACAGCGATTCCTTTGACGGAAGTAAATGAAACAACGAAAAATAACACTAACAACACAGCGAACCAATTTATTGCACAATATATGAAAACTCCACAGCCCCAAATGGCTTCCATGGCACAACCGATGCACCTCGGCTTCAGACCGATGCTCCGTCCGCCAACGCACACATTTGATACGCGACATCCACAGCCACAGTTCGGGCCTATGATTATGCAACCAGTATTTATGCAGACGGGTACGAACATGCACCAGTCCATGGGAGCATTCCAACAGCCAGCTATGCCACCATTTCCCCAGAACATGCCAATGCGACCACCGGTACCGTTCCCTAACAGAATGGAAAACAATGTACCGTTTCCGCCACACAGGCAT GGATTGA ] [+] EMBL BM614437 [ ccgCAATTTATTGCACAATATATGAAAACTCCACAGCCCCAAATGGCTTCCATGGCACAACCGATGCACCTCGGCTTCAGACCGATGCTCCGTCCGCCAACGCACACGTTTGATCCGCGACATCCACAGCCACAGTTCGGGCCTATGATTATGCAACCAGTATTTATGCAGACGGGTACGAACATGCACCAGTCCATGGGAGCATTCCAGCAGCCAGCTATGCCACCATTTCCCCAGAACATGCCAATGCGACCACCGGTACCGTTCCCTAACAGAATGGAAAACAGTGTACCGTTTCCGCCACACGGGCAT GGATTGAACAATGCGCCAGCAAAGATGATGGTACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACATCAACAGCAACATCATCAACAGAAGCAACAGCATCAAGTACAACCACACTATCCCTCCAACTGGGGCCCAAAAGGGCCGCAGCATTTGTCATACAACAAGAACAATCCTGCCGGTAATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCAGGAGGAGGAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGACTTTGATTAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACG ] [+] EMBL BM636922 [ ccgTGCCACCATTTCCCCAGAACATGCCAATGCGACCACCGGTACCGTTCCCTAACAGAATGGAAAACAGTGTACCGTTTCCGCCACACGGGCAT GGATTGAACAATGCGCCAGCAAAGATGATGGTACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACATCAACAGCAACATCATCAACAGAAGCAACAGCATCAAGTACAACCACACTATCCCTCCAACTGGGGCCCAAAAGGGCCGCAGCATTTGTCATACAACAAGAACAATCCTGCCGGTAATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCAGGAGGAGGAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGACTTTGATTAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAACTACCGGCGGTTTTAATGAGAAAAATGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAGCGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTC AAAGTCGGACACCAAGC ACTAAAAAATAAGCACAACAGCAACACGTCG ] [+] EMBL BM578412 [ ccgCAGCAACATCATCAACAGAAGCAACAGCATCAAGTACAACCACACTATCCCTCCAACTGGGGCCCAAAAGGGCCGCAGCATTTGTCATACAACAAGAACAATCCTGCCGGTAATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCAGGAGGAGGAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGACTTTGATTAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAACTACCGGCGGTTTTAATGAG AAAATGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAGCGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTCAAAAGTCGGACACAAAGCAACAAAAAAATAAGCACAACAGCAACACGTCGACGGCAAAGAAGCAGTCCACGGTGGTGACGGCTGTGAAGGACCAGGATGGTCAGATTGAGGACACTTCTGTCGTGAAGCAAACTCCTTCTAAATCCAAGCCGAAGACACGCATTGCCGCACGGTTCGGAGTTGCTTCCGAGGGCTAAGCCATGCCGCCAAAAGGACGTTAGTGTTAGTATGTATGTACGTAAACCCCGTAT] consensusID : consensus_6763#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 737 fasta sequence [ACGGAAGTAAATGAAACAATCCTGCCGGTAATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCGGGAGGAGGAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGACTTTGAATAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAACTACCGGCGGTTTTAATGAGAAAAATGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAGCGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTCAAAAGTCGGACACAAAGCAACAAAAAAATAAGCACAACAGCAACACGTCGACGGCAAAGAAGCAGTCCACGGTGGTGACGGCTGTGAAGGACCAGGATGGTCAGATTGAGGACACTTCTGTCGTGAAGCAAGCTCCTTCTAAATCCAAGCCGAAGACACGCATTGCCGCACGGTTCGGAGTTGCTTCCGAGGGCTAAGCCGCCAAAAGGACGTTAGTGTTAGTATGTATGTACGTAAACCCCGTATACCAATAGGAGTGTTTTAGCATTGTTTTTGAGCGCAACGTACTCGAGTTTGGGTGTGTTATTCAATCAATTCCTTCATTTCGGTATACAACAACAATGTTTGTAAAGTTTACGTACCTACTGTAAAAAGACGGCAACGTATTTTGAACTATGTACAAACGAATAGCAGATTTATTTATGGATTGA] [+] EMBL BX618146 [ACGGAAGTAAATGAAACAATCCTGCCGGTAATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCGGGAGGAGGAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGACTTTGAATAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAACTACCGGCGGTTTTAATGAGAAAAATGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAGCGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTCAAAAGTCGGACACAAAGCAACAAAAAAATAAGCACAACAGCAACACGTCGACGGCAAAGAAGCAGTCCACGGTGGTGACGGCTGTGAAGGACCAGGATGGTCAGATTGAGGACACTTCTGTCGTGAAGCAAGCTCCTTCTAAATCCAAGCCGAAGACACGCATTGCCGCACGGTTCGGAGTTGCTTCCGAGGGCTAAGCCGCCAAAAGGACGTTAGTGTTAGTATGTATGTACGTAAACCCCGTATACCAATAGGAGTGTTTTAGCATTGTTTTTGAGCGCAACGTACTCGAGTTTGGGTGTGTTATTCAATCAATTCCTTCATTTCGGTATACAACAACAATGTTTGTAAAGTTTACGTACCTACTGTAAAAAGACGGCAACGTATTTTGAACTATGTACAAACGAATAGCAGATTTATTTATGGATTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6763#0 CCGAAAACATTGTGCAGGCTCCACCCGCGGAGAAAAGCTCCTGGCGCCGAAAACCCGAGG 60 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 ATGATGCTACTCTGCCGAAGAAGGATGGCGAACAATGGAATGGAGATAATATGACAGGAT 120 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 ATTTGAAGCAAATGTTACGCATCGACGAAAAAGCTGGAAGCGAAAAGGGGAGCGAGAAAA 180 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 GTGTAAACCCTGCAAGTATTGCCGTGCCCGCCCCAGCTAGTCTGCCGAAACCACCGATTC 240 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 AGTGGCAAACGCAAGCCGCTTCAAAGAGTCCGGCAAAGGGACCGACAGCGGTTCCTTTGA 300 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 CGGAAGTAAATGAAACAACGAAAAATAACACTAACAACACAGCGAACCAATTTATTGCAC 360 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 AATATATGAAAACTCCACAGCCCCAAATGGCTTCCATGGCACAACCGATGCACCTCGGCT 420 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 TCAGACCGATGCTCCGTCCGCCAACGCACACGTTTGATCCGCGACATCCACAGCCACAGT 480 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 TCGGGCCTATGATTATGCAACCAGTATTTATGCAGACGGGTACGAACATGCACCAGTCCA 540 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 TGGGAGCATTCCAGCAGCCAGCTATGCCACCATTTCCCCAGAACATGCCAATGCGACCAC 600 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 CGGTACCGTTCCCTAACAGAATGGAAAACAGTGTACCGTTTCCGCCACACGGGCATGGAT 660 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 TGAACAATGCGCCAGCAAAGATGATGGTACAGCAGCAGCAGCAGCAGCAGCAGCAACAGC 720 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 AACATCAACAGCAACATCATCAACAGAAGCAACAGCATCAAGTACAACCACACTATCCCT 780 consensus_6763#1 ------------------------------------------------------------ consensus_6763#0 CCAACTGGGGCCCAAAAGGGCCGCAGCATTTGTCATACAACAAGAACAATCCTGCCGGTA 840 consensus_6763#1 ------------------------------ACGGAAGTAAATGAAACAATCCTGCCGGTA 30 * ** **************** consensus_6763#0 ATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCAGGAGGAG 900 consensus_6763#1 ATGGTGCTTTTGTGCCATTGCAGGCAATGAAAAAGACAGCTAAGGGCAAATCGGGAGGAG 90 **************************************************** ******* consensus_6763#0 GAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGA 960 consensus_6763#1 GAAGCGGTAGTGCTAACTATAGCAACGTTAGTAATGTGGCAGCAGCAGCAGCTAGTGAGA 150 ************************************************************ consensus_6763#0 CTTTGATTAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAA 1020 consensus_6763#1 CTTTGAATAGCCAGAATGTCAAAAATCAGCCCACACCACCATCAAAAACCAACGGGCAAA 210 ****** ***************************************************** consensus_6763#0 CTACCGGCGGTTTTAATGAGAAAA-TGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAG 1079 consensus_6763#1 CTACCGGCGGTTTTAATGAGAAAAATGCTCGCCGAAGGCAGGAGGTGGAACAAAAGCAAG 270 ************************ *********************************** consensus_6763#0 CGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTCAAA-GTCGGACACCAAGCA-CTAA 1137 consensus_6763#1 CGGAAGTTAAGCAGGGCTTTGCCACTTTCCTTTCTCAAAAGTCGGACACAAAGCAACAAA 330 *************************************** ********* ***** * ** consensus_6763#0 AAAATAAGCACAACAGCAACACGTCGACGGCAAAGAAGCAGTCCACGGTGGTGACGGCTG 1197 consensus_6763#1 AAAATAAGCACAACAGCAACACGTCGACGGCAAAGAAGCAGTCCACGGTGGTGACGGCTG 390 ************************************************************ consensus_6763#0 TGAAGGACCAGGATGGTCAGATTGAGGACACTTCTGTCGTGAAGCAAACTCCTTCTAAAT 1257 consensus_6763#1 TGAAGGACCAGGATGGTCAGATTGAGGACACTTCTGTCGTGAAGCAAGCTCCTTCTAAAT 450 *********************************************** ************ consensus_6763#0 CCAAGCCGAAGACACGCATTGCCGCACGGTTCGGAGTTGCTTCCGAGGGCTAAGCCATGC 1317 consensus_6763#1 CCAAGCCGAAGACACGCATTGCCGCACGGTTCGGAGTTGCTTCCGAGGGCTAA-----GC 505 ***************************************************** ** consensus_6763#0 CGCCAAAAGGACGTTAGTGTTAGTATGTATGTACGTAAACCCCGTAT------------- 1364 consensus_6763#1 CGCCAAAAGGACGTTAGTGTTAGTATGTATGTACGTAAACCCCGTATACCAATAGGAGTG 565 *********************************************** consensus_6763#0 ------------------------------------------------------------ consensus_6763#1 TTTTAGCATTGTTTTTGAGCGCAACGTACTCGAGTTTGGGTGTGTTATTCAATCAATTCC 625 consensus_6763#0 ------------------------------------------------------------ consensus_6763#1 TTCATTTCGGTATACAACAACAATGTTTGTAAAGTTTACGTACCTACTGTAAAAAGACGG 685 consensus_6763#0 ---------------------------------------------------- consensus_6763#1 CAACGTATTTTGAACTATGTACAAACGAATAGCAGATTTATTTATGGATTGA 737 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||