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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 866 fasta sequence
[CCGAGAAAAAGTCGTGGTGCTGTATTTTCCAAGCGTGAGTGTTTTAAGGAAAATACAGCTTTTCAGCAATAGATTTTGTTTTTGGAAAAATACAGCTTCATTCCATTGCCATTGACGTGAACATATTTGTTTTTACACAGATTAAGTGTTTATAAAAGCTTTCAAAATGGCTATGTCCAAAACGACCAACACATACAATCGACAGAACTGGGAAGATTCGGAATTTCCAATACTTTGCCAAACATGCCTTGGGGACAATCCGTATGTTCGAATGATTAAAGAACGCTACGGCAAAGAATGCAAGATCTGCACACGTCCATTCACCATCTTTCGTTGGTGTCCCGGAGCCAGGATGCGTTTCAAAAAGACAGAAATTTGCCAGACGTGTAGCAAGCTGAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGCTTACCAACACAAGTGCGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTCTACATCCAAAACATTGAATCGCAACTGAAGGCGGGCGGCGATAATACGGTTGCCGCAGGAACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAATTAGCTCGTACCGCACCCTACTACAAGCGCAATCTACCTCATATTTGCTCGTTCTGGGTGAAGGGTGAATGTAAACGAGGCGAAGAGTGTCCCTACCGACATGACAAACCCGTTGAACCGGATGATCCATTATCGGAGCAAAACATTCGTGACCGGTACTATGGCCGAAATGATCCAGTTGCGGACAAGCTGATGAAACGCGCTGCTTCGATACCAACTCTTGACCCACCGGAAGACAAAACGATCACTA]
[+] EMBL BM613995 [CCGAGAAAAAGTCGTGGTGCTGTATTTTCCAAGCGTGAGTGTTTTAAGGAAAATACAGCTTTTCATCAATAGATTTTGTTTTTGGAAAAATACAGCTTCATTCCATTGCCATTGACGTGAACATATTTGTTTTTACACAGATTAAGTGTTTATAAAAGCTTTCAAAATGGCTATGTCCAAAACGACCAATACATACAATCGACAGAACTGGGAAGATTCGGAATTTCCAATACTTTGCCAAACATGCCTTGGGGACAATCCGTATGTTCGTATGATTAAAGAACGCTACGGCAAAGAATGCAAGATCTGCACACGTCCATTCACCATCTTTCGTTGGTGTCCCGGAGCCAGGATGCGTTTCAAAAAGACAGAAATTTGCCAGACGTGTAGCAAGCTGAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGTTTACCAACACAAGTGCGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTCTACATCCAAAACATTGAATCGCAACTGAAGGCGGGTGGCGATAATACGGTTGCCGCAGGAACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAACTAGCTCGTACCGCACCCTACTACAAGCGCAATCTACCTCATATTTGCTCG ]
[+] EMBL BM616119 [CCG GAAAAAGTCGTGGTGCTGTATTTTCCAAGCGTGAGTGTTTTAAGGAAAATACAGCTTTTCAGCAATAGATTTTGTTTTTGGAAAAATACAGCTTCATTCCATTGCCATTGACGTGAACATATTTGTTTTTACACAGATTAAGTGTTTATAAAAGCTTTCAAAATGGCTATGTCCAAAACGACCAACACATACAATCGACAGAACTGGGAAGATTCGGAATTTCCAATACTTTGCCAAACATGCCTTGGGGACAATCCGTATGTTCGAATGATTAAAGAACGCTACGGCAAAGAATGCAAGATCTGCACACGTCCATTCACCATCTTTCGTTGGTGTCCCGGAGCCAGGATGCGTTTCAAAAAGACAGAAATTTGCCAGACGTGTAGCAAGCTGAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGCTTACCAACACAAGTGCGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTCTACATCCAAAACATTGAATCGCAACTGAAGGCGGGCGGCGATAATACGGTTGCCGCAGGAACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAATTAGCTCGTACCGCACCC ]
[+] EMBL BM601896 [ ccgGTTTTAAGGAAAATACAGCTTTTCAGCAATAGATTTTGTTTTTGGAAAAATACAGCTTCATTCCATTGCCATTGACGTGAACATATTTGTTTTTACACAGATTAAGTGTTTATAAAAGCTTTCAAAATGGCTATGTCCAAAACGACCAACACATACAATCGACAGAACTGGGAAGATTCGGAATTTCCAATACTTTGCCAAACATGCCTTGGGGACAATCCGTATGTTCGAATGATTAAAGAACGCTACGGCAAAGAATGCAAGATCTGCACACGTCCATTCACCATCTTTCGTTGGTGTCCCGGAGCCAGGATGCGTTTCAAAAAGACAGAAATTTGCCAGACGTGTAGCAAGCTGAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGCTTACCAACACAAGTGCGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTCTACATCCAAAACATTGAATCGCAACTGAAGGCGGGCGGCGATAATACGGTTGCCGCAGGAACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAATTAGCTCGTACCGCACCCTACTACAAGCGCAATCTACCTCATATTTGCTCGTTCTGGGTGAAGGGTGAATGTAAACGAGGCGAAGAGTGTCCC ]
[+] EMBL BM591130 [ ccGTCCAAAACGACCAACACATACAATCGACAGAACTGGGAAGATTCGGAATTTCCAATACTTTGCCAAACATGCCTTGGGGACAATCCGTATGTTCGAATGATTAAAGAACGCTACGGCAAAGAATGCAAGATCTGCACACGTCCATTCACCATCTTTCGTTGGTGTCCCGGAGCCAGGATGCGTTTCAAAAAGACAGAAATTTGCCAGACGTGTAGCAAGCTGAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGCTTACCAACACAAGTGCGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTCTACATCCAAAACATTGAATCGCAACTGAAGGCGGGCGGCGATAATACGGTTGCCGCAGGAACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAATTAGCTCGTACCGCACCCTACTACAAGCGCAATCTACCTCATATTTGCTCGTTCTGGGTGAAGGGTGAATGTAAACGAGGCGAAGAGTGTCCCTACCGACATGACAAACCCGTTGAACCGGATGATCCATTATCGGAGCAAAACATTCGTGACCGGTACTATGGCCGAAATGATCCAGTTGCGGACAAGCTGATGAAACGCGCTGCTTCGATACCAACTCTTGACCCACCGGAAGACAAAACGATCACTA]
[+] EMBL BM639948 [ ccgAAAAGACAGAAATTTGCCAGACGTGTAGCAAGCTAAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGCTTACCAACACAAGTGCGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTCTACATCCAAAACATTGAATCGCAACTGAAGGCGGGTGGCGATAATACGGTTGCCGCAGGAACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAACTAGCTCGTACCGCACCCTACTACAAGCGCAATCTACCTCATATTTGCTCGTTCTGGGTGAAGGGTGAATGTAAA ]
consensusID : consensus_6768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence
[CCCCGAGTTNAAAAAGTCGTGGTGCTGTATTCTCCAAGCGTGAGTGTTTTAAGGAAAATACAGCTTTTCATCAATAGATTTGTATTTTGGAAAAATACAGCTTCATATCCATTGCCATTGACGTGAACATATATTAGTATTTTACACAGATTAAGTGGTTATCAAAAGCTTTCAACACATGGCTATGTCCAAAACGACCAATACATACAAGTCGACAGAACTGGCGACAGATTCGGCANATATTCCAATACTTTGCCAAACATGCCTATGAGGGACAATCCGTATGTTCGTATGCATNTCAAAGACACGCGTTAACGGGGNACAAGGCACATGCAAGCATCTTGCACACAGTTCCAATTCCACCAATCATTTCCGGTATGGTGTCCCGGAGCCAGAGATAGCAGCTTNATCCANACAAAAAGCAACCACGNACACACTTATGGCCCCAGAACCCGGTTGTAAGGCCCCAAAGGCGTCAAAAAGCANACGGATATATTGGTNACCAAAACAAATAGATCCTGCGTACAGACCCTTGCGACNTCACCGGGCNCTTTNACGCCAGAGACAAACCAAAACGCATTGGCACGNNCAACAGNGAAACACGGAACAGNTGGACANGAACACCCTTCCAAACAACGTCACANTAGCAACCCAAGGCGGNCCGCTTACCACCAACAACCTCATCCCCCCCAAGCANAACGCAANAGTTGGGAACCGCGTTAAAAACAACCCTAAACGACAGNCAACACNTTATCCCTTTCACNCGAAAAGTGCCCCAAACAACACAACCNCAACATANGCGGCAGAAGTAC]
[+] EMBL AL693110 [CCCCGAGTTNAAAAAGTCGTGGTGCTGTATTCTCCAAGCGTGAGTGTTTTAAGGAAAATACAGCTTTTCATCAATAGATTTGTATTTTGGAAAAATACAGCTTCATATCCATTGCCATTGACGTGAACATATATTAGTATTTTACACAGATTAAGTGGTTATCAAAAGCTTTCAACACATGGCTATGTCCAAAACGACCAATACATACAAGTCGACAGAACTGGCGACAGATTCGGCANATATTCCAATACTTTGCCAAACATGCCTATGAGGGACAATCCGTATGTTCGTATGCATNTCAAAGACACGCGTTAACGGGGNACAAGGCACATGCAAGCATCTTGCACACAGTTCCAATTCCACCAATCATTTCCGGTATGGTGTCCCGGAGCCAGAGATAGCAGCTTNATCCANACAAAAAGCAACCACGNACACACTTATGGCCCCAGAACCCGGTTGTAAGGCCCCAAAGGCGTCAAAAAGCANACGGATATATTGGTNACCAAAACAAATAGATCCTGCGTACAGACCCTTGCGACNTCACCGGGCNCTTTNACGCCAGAGACAAACCAAAACGCATTGGCACGNNCAACAGNGAAACACGGAACAGNTGGACANGAACACCCTTCCAAACAACGTCACANTAGCAACCCAAGGCGGNCCGCTTACCACCAACAACCTCATCCCCCCCAAGCANAACGCAANAGTTGGGAACCGCGTTAAAAACAACCCTAAACGACAGNCAACACNTTATCCCTTTCACNCGAAAAGTGCCCCAAACAACACAACCNCAACATANGCGGCAGAAGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6768#0 --CCGAG---AAAAAGTCGTGGTGCTGTATTTTCCAAGCGTGAGTGTTTTAAGGAAAATA 55
consensus_6768#1 CCCCGAGTTNAAAAAGTCGTGGTGCTGTATTCTCCAAGCGTGAGTGTTTTAAGGAAAATA 60
***** ********************* ****************************
consensus_6768#0 CAGCTTTTCAGCAATAGATTTTGTTTTTGGAAAAATACAGCTTCAT-TCCATTGCCATTG 114
consensus_6768#1 CAGCTTTTCATCAATAGATTTGTATTTTGGAAAAATACAGCTTCATATCCATTGCCATTG 120
********** ********** ********************** *************
consensus_6768#0 ACGTGAACATATTT--GT-TTTTACACAGATTAAGTGTTTAT-AAAAGCTTTCAAAA--T 168
consensus_6768#1 ACGTGAACATATATTAGTATTTTACACAGATTAAGTGGTTATCAAAAGCTTTCAACACAT 180
************ * ** ****************** **** ************ * *
consensus_6768#0 GGCTATGTCCAAAACGACCAACACATACAA-TCGACAGAACTGGGAA--GATTCGGAAT- 224
consensus_6768#1 GGCTATGTCCAAAACGACCAATACATACAAGTCGACAGAACTGGCGACAGATTCGGCANA 240
********************* ******** ************* * ******* *
consensus_6768#0 --TTCCAATACTTTGCCAAACATGCCTT--GGGGACAATCCGTATGTTCGAATG---ATT 277
consensus_6768#1 TATTCCAATACTTTGCCAAACATGCCTATGAGGGACAATCCGTATGTTCGTATGCATNTC 300
************************* ******************* *** *
consensus_6768#0 AAAGA-ACGCTACGGCAAAGAATGCAAGATCTGCACACGTCC-ATTCACCATCTTTCGTT 335
consensus_6768#1 AAAGACACGCGTTAACGGGGNACAAGGCACATGCAAGCATCTTGCACACAGTTCCAATTC 360
***** **** * * * * **** * ** *** * *
consensus_6768#0 GGTGTCCCGGAGCCAGGATGCGTTTCAAAAAGACAGAAATTTGCCAGACGTGTAGCAAGC 395
consensus_6768#1 CACCAATCATTTCCGGTATG-GTGTCCCGGAGCCAGAGA--TAGCAG--CTTNATCCANA 415
* ** * *** ** ** ** **** * * *** * * * *
consensus_6768#0 TGAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGCT-TACCAACACAAGTG 454
consensus_6768#1 CAAAAAGCAACCA-CGNACACACTTAT-GGCCCCAGAACCCGGTTGTAAGGCCCCAAAGG 473
** * * * *** * * * ** ** *** * ** * *** *
consensus_6768#0 CGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTC 514
consensus_6768#1 CG-----------TCAAAAAGCANACGGATATATTGGTNACCAAAACAAATAG---ATCC 519
** **** * ** * ** * * * *** * ** *
consensus_6768#0 TACATCCAAAACATTGAATCGCAACTGAAGGCGGGCGGCGATAATACGGTTGCCGCAGGA 574
consensus_6768#1 TGCGTACAGACCCTTGCGACNTCACCGG----GCNCTTTNACGCCAGAGACAAACCAAAA 575
* * * ** * * *** * ** * * * * * * ** *
consensus_6768#0 ACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAATTAGCTCGTAC-CGCACC 633
consensus_6768#1 CGCATTGGCA------CGNNCAACAGNGAAACACGGAACAGNTGGACANGAACACCCTTC 629
****** * ** ** * * * ** * * * ** * * *
consensus_6768#0 CTACTACAAGCGCAATC-TACCTCATATTTGCTCGTTCTGGGTGAAGGGTGAATGTAAAC 692
consensus_6768#1 CAAACAACGTCACANTAGCAACCCAAGGCGGNCCGCTTACCACCAA----CAACCTCATC 685
* * * * ** * * * ** * ** * ** ** * * *
consensus_6768#0 GAGGCGAAGAGTGTCCCTACCGACATGACAAACCCGTTGAACCGGA---TGATCCATTAT 749
consensus_6768#1 CCCCCCAAGCANAACGCAANAG--TTGGGAACCGCGTTAAAAACAACCCTAAACGACAGN 743
* *** * * * * ** ** * **** ** * * * * *
consensus_6768#0 CGGAGCAAAACATTCGTGACCGGTACTATGGCCGAAATGATCCAGTTGCGG-ACAAGCTG 808
consensus_6768#1 CAACACNTTATCCCTTTCACNCGAAAAGTGCCCCAAACAACACAACCNCAACATANGCGG 803
* * * * ** * * ** ** *** * ** * * * ** *
consensus_6768#0 ATGAAACGCGCTGCTTCGATACCAACTCTTGACCCACCGGAAGACAAAACGATCACTA 866
consensus_6768#1 CAGAAGTAC------------------------------------------------- 812
*** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||