These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 913 fasta sequence [CAGAATCCCCGACGGTTATTGGAGGCTTTCGTTTCTACCGAACGTTCTCGCCATGGGCCACAACGTCCACCGCAGCAGGATACTTACCAGCAAACAGACAGGACACAGTATTTTACGCTCCGTTCAACACCGACTGGCACGATAACCAACTGTTGAGTGAGAATTAAAAGTGCTGATTGCACAATTCTAAACACCATGGCAACGGGAAATCATCATATCCCGATCANTATGACACATCGAGCAAAAGTCAACAGCCCGCACAAACGTCAAACCGTGCTGTCAGATGGTGTANGNTGATCTGCTGCGGCACCATGCACGAACAAACATACACCTTTTTGCACTANACTTATCTCCAGTATNTCGNNACACGGACTTNGTGCGTGTACATATAAGCTGGACTATTAACTATGCAACTAGCATTTATCCGTCGGCTNCCCGAGGCTATTGCGAGNGATGTCGGNNACAACAGACGGCACGNCANGCACACTGGGCTACCCTTTCGCCTACGCGAACAATTGGCACCATTATTCCGACTTCTGCCACTCACTGGCAAANAAACCTTTCCGAAAGCCAAGCGTNCCTTGGACTAACGGCAAAAGGCACCTNTTGAATGGGGGTCTANGCACCAAACCCGACTCTNCTAACCCAACTCCCCGATTGAACATTGACTNGCTGGCTGANTCCACCCGTTACGNTGGCGCTCCAATTATAACNCTNAACAGGGGCCGGACACACTAACGCCAACTATNCCTTGAGACNGAATTGGAAGCTCAGGCGACCCACCNCGCCGTNGCCTAACCTACTTCCACAGCCACNCACCNGGAGNCTTAACGACCGGCAAAGCGAAGGCCACCCNTTGGCAACGCCTGCGCCATTGGCCAACTCTCCACCACCGCACAAAACGATCCCCACC] [+] EMBL AL693095 [CAGAATCCCCGACGGTTATTGGAGGCTTTCGTTTCTACCGAACGTTCTCGCCATGGGCCACAACGTCCACCGCAGCAGGATACTTACCAGCAAACAGACAGGACACAGTATTTTACGCTCCGTTCAACACCGACTGGCACGATAACCAACTGTTGAGTGAGAATTAAAAGTGCTGATTGCACAATTCTAAACACCATGGCAACGGGAAATCATCATATCCCGATCANTATGACACATCGAGCAAAAGTCAACAGCCCGCACAAACGTCAAACCGTGCTGTCAGATGGTGTANGNTGATCTGCTGCGGCACCATGCACGAACAAACATACACCTTTTTGCACTANACTTATCTCCAGTATNTCGNNACACGGACTTNGTGCGTGTACATATAAGCTGGACTATTAACTATGCAACTAGCATTTATCCGTCGGCTNCCCGAGGCTATTGCGAGNGATGTCGGNNACAACAGACGGCACGNCANGCACACTGGGCTACCCTTTCGCCTACGCGAACAATTGGCACCATTATTCCGACTTCTGCCACTCACTGGCAAANAAACCTTTCCGAAAGCCAAGCGTNCCTTGGACTAACGGCAAAAGGCACCTNTTGAATGGGGGTCTANGCACCAAACCCGACTCTNCTAACCCAACTCCCCGATTGAACATTGACTNGCTGGCTGANTCCACCCGTTACGNTGGCGCTCCAATTATAACNCTNAACAGGGGCCGGACACACTAACGCCAACTATNCCTTGAGACNGAATTGGAAGCTCAGGCGACCCACCNCGCCGTNGCCTAACCTACTTCCACAGCCACNCACCNGGAGNCTTAACGACCGGCAAAGCGAAGGCCACCCNTTGGCAACGCCTGCGCCATTGGCCAACTCTCCACCACCGCACAAAACGATCCCCACC] consensusID : consensus_6769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 867 fasta sequence [AAAGTCAACAGCCGCACAAACGTCAAACCGTGCTGTCAGATGGTGTTGTGATTGCTGCGGCACATGCCAAAGAAAACATACACATTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGTGTGTTTTAGTGGATTTACTTGCAGCTAGCATTTATCCATCGTTCCGAAGTTTGCGGGGATGTCAGTTACACAGCGAGTTCAGCAATGGGCTACCTTCGCTAGGACATGGCACATTTTCGATTGCACTTGGCAAAACCCCTTCGAAGCAGCGTCCTTGATAAGAAAGCACTTGATGGGTTTGCACAAACCGATTTACCATCCGATGAATGATTGTGGTGATCACGTAGTGGTCATTAATACGGGCGAAATAGCACTTCCTGGCGATGAGTGGAAAAAGCGTGCCTACTTTCACCACACGGGCTACGCGGGAGGAGCAACCTGGACACTGGCATGGCAATTGCACGAAAAAGATCCCACGATGATCATGAAGAAAGCGGTTTACCGAGCAATGAAGGGTAATCTGCAGCGGAGACACACGATGCAACGGCTACACCTGTTCAAGGACGCCGAGGTACCGAAGGACATTCTTGAAAATGTAACCAACCAGATACGTCAGCCACGCCGTGTTCCGCAGCGGCTGGATCACATCGATCCGGAAGTGGTTCGCAATTTCCCCAAGGTAATGGACTACCCGAAAGATTATATCCTGCGATAGAACAGCGTCTTCGTAATGTCCATCGCATTCTTTTGGCATTAGTTCGCCCCAGCCTGGGATTATTAGCAATAAAAACAACCATATGTGTACACAAACGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCATG] [+] EMBL CNS09H8G [AAAGTCAACAGCCGCACAAACGTCAAACCGTGCTGTCAGATGGTGTTGTGATTGCTGCGGCACATGCCAAAGAAAACATACACATTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGTGTGTTTTAGTGGATTTACTTGCAGCTAGCATTTATCCATCGTTCCGAAGTTTGCGGGGATGTCAGTTACACAGCGAGTTCAGCAATGGGCTACCTTCGCTAGGACATGGCACATTTTCGATTGCACTTGGCAAAACCCCTTCGAAGCAGCGTCCTTGATAAGAAAGCACTTGATGGGTTTGCACAAACCGATTTACCATCCGATGAATGATTGTGGTGATCACGTAGTGTTCATTAATACGGGCGAAATAGCACTTCCTGGCGATGAGTGGAAAAAGCGTGCCTACTTTCACCACACGGGCTACGCGGGAGGAGCAACCTGGACACTGGCATGGCAATTGCACGAAAAAGATCCCACGATGATCATGAAGAAAGCGGTTTACCGAGCAATGAAGGGTAATCTGCAGCGGAGACACACGATGCAACGGCTACACCTGTTCAAGGACGCCGAGGTACCGAAGAACATTCTTGAAAATGTAACCAACCAGATACGTCAGCCACGCCGTGTTCCGCAGCGGCTGGATCACATCGATCCGGAAGTGGTTCGCAATTTCCCCAAGGTAATGGACTACCCGAAAGATTATATCCTGCGATAGAACAGCGTCTTCGTAATGTCCATCGCATTCTTTTGGCATTAGTTCGCCCCAGCCTGGGATTATTAGCAATAAAAACAACCATATGTGTACACAAACGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCATG] [+] EMBL BM585527 [ cCGGCACATGCCAAAGAAAACATACACATTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGTGTGTTTTAGTGGATTTACTTGCAGCTAGCATTTATCCATCGTTCCGAAGTTTGCGGGGATGTCAGTTACACAGCGAGTTCAGCAATGGGCTACCTTCGCTAGGACATGGCACATTTTCGATTGCACTTGGCAAAACCCCTTCGAAGCAGCGTCCTTGATAAGAAAGCACTTGATGGGTTTGCACAAACCGATTTACCATCCGATGAATGATTGTGGTGATCACGTAGTGGTCATTAATACGGGCGAAATAGCACTTCCTGGCGATGAGTGGAAAAAGCGTGCCTACTTTCACCACACGGGCTACGCGGGAGGAGCAACCTGGACACTGGCATGGCAATTGCACGAAAAAGATCCCACGATGATCATGAAGAAAGCGGTTTACCGAGCAATGAAGGGTAATCTGCAGCGGAGACACACGATGCAACGGCTACACCTGTTCAAGGACGCCGAGGTACCGAAGGACATTCTTGAAAATGTAACCAACCAGATACGTCAGCCACGCCGTGTTCCGCAGCGGCTGGATCACATCGATCCGGAAGTGGTTCGCAATTTCCCCAAGGTAATGGACTACCCGAAAGATTATATCCTGCGATAG ] [+] EMBL BM647130 [ CCGAAGAAAACATACAC TTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGCGTGTTTTAGTGGATTTACTTGCAACTAGCATTTATCCGTCGTTCCGAGGTTTGCGAGGATGTCGGTTACACAGCGAGTTCAGCAATGGGCCACCTTCGCTAGGACATGGCACATTTTCGATTGCACTTGGCAAAACCCCTTCGAAGCAGCGTCCTTGATAAGAAAGCACTTGATGGGTTTGCACAAACCGATTTACCATCCGATGAATGATTGTGGTGATCACGTAGTGGTCATTAATACGGGCGAAATAGCACTTCCTGGCGATGAGTGGAAAAAGCGTGCCTACTTTCACCACACGGGCTACGCGGGAGGAGCAACCTGGACGCTGGCATGGCAATTGCACGAAAAAGATCCCACGATGATCATGAAGAAAGCGGTTTACCGAGCAATGAAGGGTAATCTGCAGCGGAGACACACGATGCAACGGCTACACCTGTTCAAGGACGCCGAGGTACCGAAGGACATTCTTGAGAATGTAACCAACCAGATACGTCAGCCACGCCGTGTTCCGCAGCGGCTGGATCACATCGATCCGGAAGTGGTTCGCAATTTCCCCAAGGTTATGGACTACCCGAAAGATTATATCCTGCGATAGAACAGCGTCTTCGTAATGTCCATCGCA ] [+] EMBL BM617135 [ ccgGAAAACATACACATTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGTGTGTTTTAGTGGATTTACTTGCGGCTAGCATTTATCCATCGTTCCGAAGTTTGCGGGGATGTCAGTTACACAGCGAGTTCAGCAATGGGCTACCTTCGCTAGGACATGGCACATTTTCGATTGCACTTGGCAAAACCCCTTCGAAGCAGCGTCCTTGATAAGAAAGCACTTGATGGGTTTGCACAAACCGATTTACCATCCGATGAATGATTGTGGTGATCACGTAGTGGTCATTAATACGGGCGAAATAGCACTTCCTGGCGATGAGTGGAAAAAGCGTGCCTACTTTCACCACACGGGCTACGCGGGAGGAGCAACCTGGACACTGGCATGGCAATTGCACGAAAAAGATCCCACGATGATCATGAAGAAAGCGGTTTACCGAGCAATGAAGGGTAATCTGCAGCGGAGACACACGATGCAACGGCTACACCTGTTCAAGGACGCCGAGGTACCGAAGGACATTCTTGAAAATGTAACCAACCAGATACGTCAGCCACGCCGTGTTCCGCAGCGGCTGGATCACATCGATCCGGAAGTGGTTCGCAATTTCCCCAAGGTAATGGACTACCCGCAAGATTATATCCTGCGATAGAACAGCGTCTTCGTAAT ] consensusID : consensus_6769#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [CAGAATCGGCACGAGGTGTCAGATGGTGTTGTGATTGCTGCGGCACATGCAAAGAAAACATACACTTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGCGTGTTTTACGTGGATTTACTTGCAACTAGCTTTTATCCGTCGTTCCGAGGTTTGCGAGGATGTCGGGTTAACACAGCGAGTTCAGCAATGGGCCACCCTTTCGCTAGGACATGGCACATTTTCGATTTGCACTTTGGGCAAAAACCCCTTTCGAAGACAGGCGTCCCTTTGATTAAGAAAAGCACTTTATGGGGTTTTGCACAAACCGATTTTACCATCCGATGAATGATTGTGGGTGATCACGGTTAGTGGTCAGTTAAACTANCGGGGGCGGAAATAGCACTTCCCTGGCGATTGAAGTTGGCAAAAAGCGTGCCTTACTTTCCACCAACACCGGGCTACGCGGGANGAGCAACCTGGACGCTGGCATGGCCAATTGCACGAANAACAGGATCCCAGCGATGAGTCATGAAGAAAAGCGGTTTTACCGAGGCAACTGAAGGGTAATCTAGNAGCGGAGACACGACGATGCAACCGGGGTACACCCTGTTCCAAGGACGCCGAGGTAACCGAAGGACATTGCTTGCAAAAGATGTAACCT] [+] EMBL BX468732 [CAGAATCGGCACGAGGTGTCAGATGGTGTTGTGATTGCTGCGGCACATGCAAAGAAAACATACACTTTTTGCACTAATTTTCTCCAGTTTTCGAAAGGATTTGTGCGTGTTTTACGTGGATTTACTTGCAACTAGCTTTTATCCGTCGTTCCGAGGTTTGCGAGGATGTCGGGTTAACACAGCGAGTTCAGCAATGGGCCACCCTTTCGCTAGGACATGGCACATTTTCGATTTGCACTTTGGGCAAAAACCCCTTTCGAAGACAGGCGTCCCTTTGATTAAGAAAAGCACTTTATGGGGTTTTGCACAAACCGATTTTACCATCCGATGAATGATTGTGGGTGATCACGGTTAGTGGTCAGTTAAACTANCGGGGGCGGAAATAGCACTTCCCTGGCGATTGAAGTTGGCAAAAAGCGTGCCTTACTTTCCACCAACACCGGGCTACGCGGGANGAGCAACCTGGACGCTGGCATGGCCAATTGCACGAANAACAGGATCCCAGCGATGAGTCATGAAGAAAAGCGGTTTTACCGAGGCAACTGAAGGGTAATCTAGNAGCGGAGACACGACGATGCAACCGGGGTACACCCTGTTCCAAGGACGCCGAGGTAACCGAAGGACATTGCTTGCAAAAGATGTAACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6769#1 AAAGTCAACAGCCGCACAAACGTCAAACCGTGCTGTCAGATGGTGTTGTGATTGCTGCG- 59 consensus_6769#2 --------------CAGAATCGGCA---CGAGGTGTCAGATGGTGTTGTGATTGCTGCG- 42 consensus_6769#0 --------------CAGAATCCCCGA--CG-GTTATTGGAGGCTTTCGTTTCTACCGAAC 43 ** ** * * ** * * * ** * * * ** * * * consensus_6769#1 GCACATGCCAAAGAAAACA-TACACATTTTTGCACTAATTTTCTCCAGTTTTCGAA-AGG 117 consensus_6769#2 GCACATGC-AAAGAAAACA-TACAC-TTTTTGCACTAATTTTCTCCAGTTTTCGAA-AGG 98 consensus_6769#0 GTTCTCGCCATGGGCCACAACGTCCACCGCAGCAG-GATACTTACCAGCAAACAGACAGG 102 * * ** * * *** * *** ** * **** * * *** consensus_6769#1 ATTTGTGTGTGTTTTA-G-TGGATTTACTTGCAGCTAGCAT--TTATCCATCGTTCCGAA 173 consensus_6769#2 ATTTGTGCGTGTTTTACG-TGGATTTACTTGCAACTAGCTT--TTATCCGTCGTTCCGAG 155 consensus_6769#0 ACACA---GTATTTTACGCTCCGTTCAACACCGACTGGCACGATAACCAACTGTTGAGTG 159 * ** ***** * * ** * * ** ** * * * *** * consensus_6769#1 GTTTGCGGGGATGTCAGTT--ACA----CAGCGAGTTCAGCAATGGG---CTACC--TTC 222 consensus_6769#2 GTTTGCGAGGATGTCGGGTTAACA----CAGCGAGTTCAGCAATGGG---CCACCCTTTC 208 consensus_6769#0 AGAATTAAAAGTGCTGATTGCACAATTCTAAACACCATGGCAACGGGAAATCATCATATC 219 ** * *** * * **** *** * * ** consensus_6769#1 GCTAGGAC-ATGGCACATTTTCGA----TT-GCACTT--GGCAAA----A--CCCCTTCG 268 consensus_6769#2 GCTAGGAC-ATGGCACATTTTCGA----TTTGCACTTTGGGCAAA----AACCCCTTTCG 259 consensus_6769#0 CCGATCANTATGACACATCGAGCAAAAGTCAACAGCCCGCACAAACGTCAAACCGTGCTG 279 * * * *** ***** * * ** **** * ** * consensus_6769#1 AAG--CAGCGTCC--TTGAT--AAGAAAGCACTTGATGGG--TTTGCACAAACCGATTT- 319 consensus_6769#2 AAGACAGGCGTCCCTTTGATTAAGAAAAGCACTTTATGGGGTTTTGCACAAACCGATTTT 319 consensus_6769#0 TCAGATGGTGTANG-NTGATCTGCTGCGGCACCATGCACGAACAAACATACACCTTTTTG 338 * ** **** **** * ** * *** *** consensus_6769#1 -ACCAT--------CCGATGAATGATTGT---GG-TGATCACG--TAGTGGTCA------ 358 consensus_6769#2 -ACCAT--------CCGATGAATGATTGT---GGGTGATCACGGTTAGTGGTCAGTTAAA 367 consensus_6769#0 CACTANACTTATCTCCAGTATNTCGNNACACGGACTTNGTGCGTGTACATATAAGCTGGA 398 ** * ** * * * * ** ** * * consensus_6769#1 TTAATACGGGCG-AAATAGCACTTCC-TGGCGAT---GAGTGG--AAAAAGCGTGCC-T- 409 consensus_6769#2 CTANCGGGGGCGGAAATAGCACTTCCCTGGCGATTG-AAGTTGGCAAAAAGCGTGCC-TT 425 consensus_6769#0 CTATTAACTATGCAACTAGCATTTATCCGTCGGCTNCCCGAGGCTATTGCGAGNGATGTC 458 ** * ** ***** ** * ** * * * * * * * consensus_6769#1 ACTTTC-ACCA-CAC-GGGCTACGCGGGAGGAGCAACCTGGACACTGGCATGGC-AATTG 465 consensus_6769#2 ACTTTCCACCAACACCGGGCTACGCGGGANGAGCAACCTGGACGCTGGCATGGCCAATTG 485 consensus_6769#0 GGNNACAACAGACGGCACGNCANGCACACTGGGCTACCCTTTCGCCTACGCGAACAATTG 518 * ** * * * ** * ** *** * * * * ***** consensus_6769#1 -CACGAAAAA---GA-TCCCA-CGATGA-TCATGAAGAAA-GCGGTTT-ACCGAG-CAA- 514 consensus_6769#2 -CACGAANAACAGGA-TCCCAGCGATGAGTCATGAAGAAAAGCGGTTTTACCGAGGCAAC 543 consensus_6769#0 GCACCATTATTCCGACTTCTGCCACTCACTGGCAAANAAA---CCTTTCCGAAAGCCAAG 575 *** * * ** * * * * * * ** *** *** ** *** consensus_6769#1 TGAAGGGTAATCT-GCAGCGGA-GACAC-ACGATGCAAC--GGCTACACC-TGTTC-AAG 567 consensus_6769#2 TGAAGGGTAATCTAGNAGCGGA-GACACGACGATGCAACCGGGGTACACCCTGTTCCAAG 602 consensus_6769#0 CGTNCCTTGGACTAACGGCAAAAGGCAC--CTNTTGAATGGGGGTCTAN---GCACCAAA 630 * * ** ** * * *** * * ** ** * * * * ** consensus_6769#1 GACG-CCGAGGTA-CCGAAGGACATTCTTGAAAATGTAACCAACCAGATACGTCAGCCAC 625 consensus_6769#2 GACG-CCGAGGTAACCGAAGGACATTGCTTGCAAAAGATGTAACCT-------------- 647 consensus_6769#0 CCCGACTCTNCTAACCCAACTCCCCGATTGAACAT-TGACTNGCTGGCTGANTCCACC-C 688 ** * ** ** ** * * * * consensus_6769#1 GCCGTGTTCCGCAGCGGCTGGATCACATCGATCCGGAAGTGGTTCGCAATTTCCCCAAGG 685 consensus_6769#2 ------------------------------------------------------------ consensus_6769#0 GTTACGNT----GGCGCTCCAATTATAACNCTNAACAGGGGCCGGACA----CACTAACG 740 consensus_6769#1 TAATGGACTACCCGAAAGATTATATCCTGCGATAGAACAGCGTCTTCGTAATGTCCATCG 745 consensus_6769#2 ------------------------------------------------------------ consensus_6769#0 CCAACTATNCCTTG--AGACNGAATTGGAAGCTCAGGCGAC-CCACCNCGCCGTNGCCTA 797 consensus_6769#1 CATTCTTTTGGCATTAGTTCGCCCCAGCCTGGGATTATTAGCAA--TAAAAACAACCATA 803 consensus_6769#2 ------------------------------------------------------------ consensus_6769#0 ACCTACTTCCACAGCCACNCACCNGGAGNCTTAACGACCGGCAAAGCGAAGGCCACCCNT 857 consensus_6769#1 TGTGTACACAAACGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCC 863 consensus_6769#2 ------------------------------------------------------------ consensus_6769#0 TGGCAACGCCTGCGCCATTGGCCAACTCTCCACCACCGCACAAAACGATCCCCACC---- 913 consensus_6769#1 CATG 867 consensus_6769#2 ---- consensus_6769#0 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||