These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6770#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1137 fasta sequence [CTATGATTGAAGGTAACATTAATCCGAGAGGCAATCGAAAAGCGACAAAATTAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCTAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTGACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCTGCCAAGCGCAAGGACGATCTGAAGGTTACGCGAGGCCGTGAACAGCTGGAGGAAGCGAAGAGCACATACGAGGTGTTGAATTCCGAGCTGCACGACGAACTGCCGGCCCTGTACGATTCGAGAATACTGTTCCTGGTGACGAACTTGCAGACGCTGTTCGCGTGCGAGCAGCAGTTCCACAGCGAAACGTCCAAGGTGTACGCGGAGCTGTAAGCGATCGTAGACAAACTGGCCACCGAATCCCAGCGCGGCTCCTACACGCTGAAGAAGATCAACGCTAACTCGAACCCATCTAGCCCCCAGCAGTCACCGGTGAAGGCGAATCTGTCGATTGTGAATAATGTCACTAACGGGTCGGCCAACGCTAACGGACATACTTCCGCGCAAAGTGTGCTACCGTCGCCGAGAACACCGTCACCCAACCATCAGCTCGACCGGCAGGCGGATGGGCCAGAAGATGAAGACGACGAACCTTCCTACCAGAACACGGAAATGGTAAAGGCGGCGGCGGCGGCGGCGTCGGCGTCGGCTGCGACCAAAGCACCGACCACGAACGGTACCACCGCCTCGGACAGCACGGCGAAGCACGGCGAGCTGGAATTGAACGGCAACGGCAGCGCACCGAAAGAGAACGGTCAACCCGCAGCGACAGCGGTGACGGAAAAGTGTTCCGGC] [+] EMBL BX615581 [CTATGATTGAAGGTAACATTAATCCGAGAGGCAATCGAAAAGCGACAAAATTAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCTAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTGACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCTGCCAAGCGCAAGGACGATCTGAAGGTTACGCGAGGCCGTGAACAGCTGGAGGAAGCGAAGAGCACATACGAGGTGTTGAATTCCGAGCTGCACGACGAACTGCCGGCCCTGTACGATTCGAGAATACTGTTCCTGGTGACGAACTTGCAGACGCTGTTCGCGTGCGAGCAGCAGTTCCACAGCGAAACGTCCAAGGTGTACGCGGAGCTGTAAGCGATCGTAGACAAACTGGCCACCGAATCCCAGCGCGGCTCCTACACGCTGAAGAAGATCAACGCTAACTCGAACCCATCTAGCCCCCAGCAGTCACCGGTGAAGGCGAATC ] [+] EMBL BM650411 [ ccgGCGAAGAGCACATACGAGGTGTTGAATTCCGAGCTGCACGACGAACTGCCGGCCCTGTACGATTCGAGAATACTGTTCCTGGTGACGAACTTGCAGACGCTGTTCGCGTGCGAGCAGCAGTTCCACAGCGAAACGTCCAAGGTGTACGCCGAGCTGGAAGCGATCGTAGACAAACTGGCCACCGAATCCCAGCGCGGCTCCTACACGCTGAAGAAGATCAACGCTAACTCGAACCCATCTAGCCCCCAGCAGTCACCGGTGAAGGCGAATCTGTCGATTGTGAATAATGTCACTAACGGGTCGGCCAACGCTAACGGACATACTTCCGCGCAAAGTGTGCTACCGTCGCCGAGAACACCGTCACCCAACCATCAGCTCGACCGGCAGGCGGATGGGCCAGAAGATGAAGACGACGAACCTTCCTACCAGAACACGGAAATGGTAAAGGCGGCGGCGGCGGCGGCGTCGGCGTCGGCTGCGACCAAAGCACCGACCACGAACGGTACCACCGCCTCGGACAGCACGGCGAAGCACGGCGAGCTGGAATTGAACGGCAACGGCAGCGCACCGAAAGAGAACGGTCAACCCGCAGCGACAGCGGTGACGGAAAAGTGTTCCGGC] consensusID : consensus_6770#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 665 fasta sequence [CCGCTCTCGCGTAGTGCGAATCGTAGGAAGAACGGTTTTACCGAACGACATCCGGTAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAAGTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCACGATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCCAGAAACATGCTGGCCGCGCCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTAGACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCTGCCAAGCGCAA] [+] EMBL BM641482 [CCGCTCTCGCGTAGTGCGAATCGTAGGAAGAACGGTTTTACCGAACGACATCCGGTAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAAGTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCACGATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCCAGAAACATGCTGGCCGCGCCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTAGACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAG ] [+] EMBL BM627112 [ ccgCTCGCGTAGTGCGAATCGTAGGAAGAACGGTTTTACCGAACGACATCCGGTAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAAGTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCACGATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCCAGAAACATGCTGGCCGCGCCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATT GACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCTGCCAAGCGCAA] [+] EMBL BM642001 [ ccGCGAATCGTAGGAAGAACGGTTTTACCGAACGACATCCGGTAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGGGCGAGAATTAGCAAAGAAGTATCGCGTGTGCCAAATCCGTTCGAAACCGCAAGCGACAGC AAACAGCAACAGTGCACGATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCCAGAAACATGCTGGCCGCGCCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATC ] consensusID : consensus_6770#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CCGGCGAATCGTAGGAAGAACGGTGCGCTGGTGTTTTTAGTTTTACCGAACGACATCCGGTAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAAGTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCACGATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCCAGAAACATGCTGGCCGCGCCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTGACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCTGCCAAG] [+] EMBL BM646305 [CCGGCGAATCGTAGGAAGAACGGTGCGCTGGTGTTTTTAGTTTTACCGAACGACATCCGGTAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAAGTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCACGATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCCAGAAACATGCTGGCCGCGCCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCGACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAATTCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAGCCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTAAAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGCAGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTGACAAACGTGGCCGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCTGCCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6770#1 CCGCTCTCGCGTAGTGCGAATCGTAGGAAGAA-----CGGTTTTACCGAACGACATCCGG 55 consensus_6770#2 CCGGCGAATCGTAGGAAGAACGGTGCGCTGGTGTTTTTAGTTTTACCGAACGACATCCGG 60 consensus_6770#0 ------------------------------------------------------------ consensus_6770#1 TAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAA 115 consensus_6770#2 TAACCGGAAGTTGTAGTGAGCGTGAGTGTGCGAGGTCAAAGTACGAAAATTAGCAAAGAA 120 consensus_6770#0 ------------------------------------------------------------ consensus_6770#1 GTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCAC 175 consensus_6770#2 GTATCGCGTGTGCCAAATCCGTTCGAATCCGCAAGCGACAGCAAAACAGCAACAGTGCAC 180 consensus_6770#0 ------------------------------------------------------------ consensus_6770#1 GATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCC-AGAAACATGCTGGCCGCG 234 consensus_6770#2 GATGGCAGAAAATAAAGGAATGCTGCTGGCGAAATCCGTCC-AGAAACATGCTGGCCGCG 239 consensus_6770#0 ----------------CTATGATTGAAGGTAACATTAATCCGAGAGGCAATCGAAAAGCG 44 * ** ** * ** *** *** ** * *** consensus_6770#1 CCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCG 294 consensus_6770#2 CCAAGGAAAAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCG 299 consensus_6770#0 ACAAA-ATTAGCTCCTACAAAATCTTGGCAAAGTCGACCGAACGGCAGATGAAATTTTCG 103 *** * *************************************************** consensus_6770#1 ACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAAT 354 consensus_6770#2 ACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAAT 359 consensus_6770#0 ACGAACATTTGACAAACTTCAACCGACAGCACACCTGTGCAACCAGGCTGCAGAAAGAAT 163 ************************************************************ consensus_6770#1 TCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAG 414 consensus_6770#2 TCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAG 419 consensus_6770#0 TCAGCAACTACATCCGATGTGTTCGTGCCGTACAAAATGCCTCGAAAAGCCTCATGGAAG 223 ************************************************************ consensus_6770#1 CCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTA 474 consensus_6770#2 CCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCCAGGCTA 479 consensus_6770#0 CCATTACCGAAGTATACGAAAGCCAGTGGACCGGCTCGGAAGTGCTGTACGGCTAGGCTA 283 ***************************************************** ****** consensus_6770#1 AAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGC 534 consensus_6770#2 AAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGC 539 consensus_6770#0 AAACGATCGACACACAGTACCAGCAGTTTTCGTACAAGCTGGCCGATCAGGTACTGAAGC 343 ************************************************************ consensus_6770#1 AGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATTAGACAAACGTGGC 594 consensus_6770#2 AGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATT-GACAAACGTGGC 598 consensus_6770#0 AGCTGGACACCTACGCGCTACAGTTTCCGGAAATGAAGAAAAAGATT-GACAAACGTGGC 402 *********************************************** ************ consensus_6770#1 CGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCT 654 consensus_6770#2 CGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCT 658 consensus_6770#0 CGCAAGCTGGTGGACTACGATAGCCAGAGGCATTCTTTCCAGAGCCTGCAAGCGAACGCT 462 ************************************************************ consensus_6770#1 GCCAAGCGCAA------------------------------------------------- 665 consensus_6770#2 GCCAAG------------------------------------------------------ 664 consensus_6770#0 GCCAAGCGCAAGGACGATCTGAAGGTTACGCGAGGCCGTGAACAGCTGGAGGAAGCGAAG 522 ****** consensus_6770#1 ------------------------------------------------------------ consensus_6770#2 ------------------------------------------------------------ consensus_6770#0 AGCACATACGAGGTGTTGAATTCCGAGCTGCACGACGAACTGCCGGCCCTGTACGATTCG 582 consensus_6770#1 ------------------------------------------------------------ consensus_6770#2 ------------------------------------------------------------ consensus_6770#0 AGAATACTGTTCCTGGTGACGAACTTGCAGACGCTGTTCGCGTGCGAGCAGCAGTTCCAC 642 consensus_6770#1 ------------------------------------------------------------ consensus_6770#2 ------------------------------------------------------------ consensus_6770#0 AGCGAAACGTCCAAGGTGTACGCGGAGCTGTAAGCGATCGTAGACAAACTGGCCACCGAA 702 consensus_6770#1 ------------------------------------------------------------ consensus_6770#2 ------------------------------------------------------------ consensus_6770#0 TCCCAGCGCGGCTCCTACACGCTGAAGAAGATCAACGCTAACTCGAACCCATCTAGCCCC 762 consensus_6770#1 ------------------------------------------------------------ consensus_6770#2 ------------------------------------------------------------ consensus_6770#0 CAGCAGTCACCGGTGAAGGCGAATCTGTCGATTGTGAATAATGTCACTAACGGGTCGGCC 822 consensus_6770#1 ------------------------------------------------------------ consensus_6770#2 ------------------------------------------------------------ consensus_6770#0 AACGCTAACGGACATACTTCCGCGCAAAGTGTGCTACCGTCGCCGAGAACACCGTCACCC 882 consensus_6770#1 ------------------------------------------------------------ consensus_6770#2 ------------------------------------------------------------ consensus_6770#0 AACCATCAGCTCGACCGGCAGGCGGATGGGCCAGAAGATGAAGACGACGAACCTTCCTAC 942 consensus_6770#1 ------------------------------------------------------------ consensus_6770#2 ------------------------------------------------------------ consensus_6770#0 CAGAACACGGAAATGGTAAAGGCGGCGGCGGCGGCGGCGTCGGCGTCGGCTGCGACCAAA 1002 consensus_6770#1 ------------------------------------------------------------ consensus_6770#2 ------------------------------------------------------------ consensus_6770#0 GCACCGACCACGAACGGTACCACCGCCTCGGACAGCACGGCGAAGCACGGCGAGCTGGAA 1062 consensus_6770#1 ------------------------------------------------------------ consensus_6770#2 ------------------------------------------------------------ consensus_6770#0 TTGAACGGCAACGGCAGCGCACCGAAAGAGAACGGTCAACCCGCAGCGACAGCGGTGACG 1122 consensus_6770#1 --------------- consensus_6770#2 --------------- consensus_6770#0 GAAAAGTGTTCCGGC 1137 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||