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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[CCGCGCTCGTCAGTGGACGTACGAACGCAGAACGCGCTTTTTTCGCGGGCCAGCCCACCCCCCACCCCCTTATTGGACAGAAGTCTTCCCGTGCTTCGGGTTTGTTGTCTAGTGTCGCCTGCCTTTCCGTCGATCATTTCGGAACTGTGAGTGAGTGTGCGTGTGTATGCGTGAAGGGTGTGTGTGTGTGTGTGTGAGTGTGTATGTGTGTGTGTGTGGGTGCGTGCAAGCCAGTGTGTCCCGAATGTTGGGCACATTCCTGGCTAATTAGTTAATTAGTGTCAACAATCAACTTCGCGAAACCTCGCCAAGCCGACCACCACGATCACAACAATCATTCCGTACGCTACCAGCAGCACCGCCGGCTACTTGGGCAGCTTTCTGTCGAACAGCCTCAAAACGCATCAGCTCGAGGTGAACACCGACTCGAAAACGCTACGCCCGATCGCACGCCTGAAGGAGCCGCGGGAACTGTTCGCACTGCCGAAGGAACGAGACTATGATTGCCCCCAGCAGGCCCCCCGATGGCCCATCGAGTGTCAGGTGCTTGAGGAGCGCGTGTATCACCTGGACGACGCACCGGAAACGCCGGAACCGTACTACCAGCCGACCGGCAAGGAGCTGCAACCGCGCCCGGTAGGCGAAGAGAATGGCATCAT]
[+] EMBL BM619737 [CCGCGCTCGTCAGTGGACGTACGAACGCAGAACGCGCTTTTTTCGCGGGCCAGCCCACCCCCCACCCCCTTATTGGACAGAAGTCTTCCCGTGCTTCGGGTTTGTTGTCTAGTGTCGCCTGCCTTTCCGTCGATCATTTCGGAACTGTGAGTGAGTGTGCGTGTGTATGCGTGAAGGGTGTGTGTGTGTGTGTGTGAGTGTGTATGTGTGTGTGTGTGGGTGCGTGCAAGCCAGTGTGTCCCGAATGTTGGGCACATTCCTGGCTAATTAGTTAATTAGTGTCAACAATCAACTTCGCGAAACCTCGCCAAGCCGACCACCACGATCACAACAATCATTCCGTACGCTACCAGCAGCACCGCCGGCTACTTGGGCAGCTTTCTGTCGAACAGCCTCAAAACGCATCAGCTCGAGGTGAACACCGACTCGAAAACGCTACGCCCGATCGCACGCCTGAAGGAGCCGCGGGAACTGTTCGCACTGCCGAAGGAACGAGACTATGATTGCCCCCAGCAGGCCCCCCGATGGCCCATCGAGTGTCAGGTGCTTGAGGAGCGCGTGTATCACCTGGACGACGCACCGGAAACGCCGGAACCGTACTACCAGCCGACCGGCAAGGAGCTGCAACCGCGCCCGGTAGGCGAAGAGAATGGCATCAT]
consensusID : consensus_678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGCCAGCCCACCCCCCACCCCCTTATTGGACAGAAGTCTTCCCGTGCTTCGGGTTTGTTGTCTAGTGTCGCCTGCCTTTCCGTCGATCATTTCGGAACTCCGGCTACTTGGGCAGCTTTCTGTCGAACAGCCTCAAAACGCATCAGCTCGAGGTGAACACCGACTCGAAAACGCTACGCCCGATCGCACGCCTGAAGGAGCCGCGGGAACTGTTCGCACTGCCGAAGGAACGAGACTATGATTGCCCCCAGCAGGCCCCCCGATGGCCCATCGAGTGTCAGGTGCTTGAGGAGCGCGTGTATCACCTGGACGACGCACCGGAAACGCCGGAACCGTACTACCAGCCGACCGGCAAGGAGCTGCAACCGCGCCCGGTAGGCGAAGAGAATGGCATCATCGTGTACAACTACAACCCGACTAGTGCCGTGCACTACTTGCCGGTGGATGACTAGGTAACGCAGCCCGAGCCCGAACCCGTACCGTGCCCGGGGAAGGGTGGCGGGTCGGTGCTTCGACAGCTTCGGCAGCTTCGCCGGCGGCTCCAGCGCACCCTGCTGCAGTGGGAGGCGAGCGAGTACGTCGACCGGGACTACTCGTACGAGGA]
[+] EMBL BM631589 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCCAGCCCACCCCCCACCCCCTTATTGGACAGAAGTCTTCCCGTGCTTCGGGTTTGTTGTCTAGTGTCGCCTGCCTTTCCGTCGATCATTTCGGAACTCCGGCTACTTGGGCAGCTTTCTGTCGAACAGCCTCAAAACGCATCAGCTCGAGGTGAACACCGACTCGAAAACGCTACGCCCGATCGCACGCCTGAAGGAGCCGCGGGAACTGTTCGCACTGCCGAAGGAACGAGACTATGATTGCCCCCAGCAGGCCCCCCGATGGCCCATCGAGTGTCAGGTGCTTGAGGAGCGCGTGTATCACCTGGACGACGCACCGGAAACGCCGGAACCGTACTACCAGCCGACCGGCAAGGAGCTGCAACCGCGCCCGGTAGGCGAAGAGAATGGCATCATCGTGTACAACTACAACCCGACTAGTGCCGTGCACTACTTGCCGGTGGATGACTAGGTAACGCAGCCCGAGCCCGAACCCGTACCGTGCCCGGGGAAGGGTGGCGGGTCGGTGCTTCGACAGCTTCGGCAGCTTCGCCGGCGGCTCCAGCGCACCCTGCTGCAGTGGGAGGCGAGCGAGTACGTCGACCGGGACTACTCGTACGAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_678#0 CCGCGCTCGTCAGTGGACGTACGAACGCAGAACGCGCTTTTTTCGCGGGCCAGCCCACCC 60
consensus_678#1 ------------------------------------------------------------
consensus_678#0 CCCACCCCCTTATTGGACAGAAGTCTTCCCGTGCTTCGGGTTTGTTGTCTAGTGTCGCCT 120
consensus_678#1 ------------------------------------------------------------
consensus_678#0 GCCTTTCCGTCGATCATTTCGGAACTGTGAGTGAGTGTGCGTGTGTATGCGTGAAGGGTG 180
consensus_678#1 ------------------------------------------------------------
consensus_678#0 TGTGTGTGTGTGTGTGAGTGTGTATGTGTGTGTGTGTGGGTGCGTGCAAGCCAGTGTGTC 240
consensus_678#1 -----------------------------------CCGCCCACGCGTCCGCCCACGCGTC 25
* ** * *** * ***
consensus_678#0 CCGAATGTTGGGCACATTCCTGGCTAATTAGTTAATTAGTGTCAACAATCAACTTCGCGA 300
consensus_678#1 CGGGCCA----GCCCACCCCCCACCCCCTTATTGGACAGAAGTCTTCCCGTGCTTCG-GG 80
* * ** ** ** * * ** ** ***** *
consensus_678#0 AACCTCGCCAAGCCGACCACCACGATCACAACAATCATTCCGTACGCTACCAGCAGCACC 360
consensus_678#1 TTTGTTGTCTAGT-GTCGCCTGCCTTTCCGTCGATCATTTCGGAA--------------C 125
* * * ** * * * * * * * ****** ** * *
consensus_678#0 GCCGGCTACTTGGGCAGCTTTCTGTCGAACAGCCTCAAAACGCATCAGCTCGAGGTGAAC 420
consensus_678#1 TCCGGCTACTTGGGCAGCTTTCTGTCGAACAGCCTCAAAACGCATCAGCTCGAGGTGAAC 185
***********************************************************
consensus_678#0 ACCGACTCGAAAACGCTACGCCCGATCGCACGCCTGAAGGAGCCGCGGGAACTGTTCGCA 480
consensus_678#1 ACCGACTCGAAAACGCTACGCCCGATCGCACGCCTGAAGGAGCCGCGGGAACTGTTCGCA 245
************************************************************
consensus_678#0 CTGCCGAAGGAACGAGACTATGATTGCCCCCAGCAGGCCCCCCGATGGCCCATCGAGTGT 540
consensus_678#1 CTGCCGAAGGAACGAGACTATGATTGCCCCCAGCAGGCCCCCCGATGGCCCATCGAGTGT 305
************************************************************
consensus_678#0 CAGGTGCTTGAGGAGCGCGTGTATCACCTGGACGACGCACCGGAAACGCCGGAACCGTAC 600
consensus_678#1 CAGGTGCTTGAGGAGCGCGTGTATCACCTGGACGACGCACCGGAAACGCCGGAACCGTAC 365
************************************************************
consensus_678#0 TACCAGCCGACCGGCAAGGAGCTGCAACCGCGCCCGGTAGGCGAAGAGAATGGCATCAT- 659
consensus_678#1 TACCAGCCGACCGGCAAGGAGCTGCAACCGCGCCCGGTAGGCGAAGAGAATGGCATCATC 425
***********************************************************
consensus_678#0 ------------------------------------------------------------
consensus_678#1 GTGTACAACTACAACCCGACTAGTGCCGTGCACTACTTGCCGGTGGATGACTAGGTAACG 485
consensus_678#0 ------------------------------------------------------------
consensus_678#1 CAGCCCGAGCCCGAACCCGTACCGTGCCCGGGGAAGGGTGGCGGGTCGGTGCTTCGACAG 545
consensus_678#0 ------------------------------------------------------------
consensus_678#1 CTTCGGCAGCTTCGCCGGCGGCTCCAGCGCACCCTGCTGCAGTGGGAGGCGAGCGAGTAC 605
consensus_678#0 --------------------------
consensus_678#1 GTCGACCGGGACTACTCGTACGAGGA 631
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||