These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6780#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 727 fasta sequence [AATCGCACGAGGTTGNGTGCAGCAGTTCCTCTACACACTGTGGAGCTTAATTTCAATTGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGAAGTGATTTCG----AAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGACAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTGNGCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCACGGTGAGCTATCTGAAGGGTGCACGGCTAGAGCGATGAAGGTCATCATCGACGCCAACACGGGTACGGGCGGGACGAAACCGTAGCAATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGATAACTCAAGTCATTGCCAAAAGCATCGCGACACGCAAATACATTGGGAGTAGTTAAATAGGCCACAGACCAAATACCATAGAAATGGACATACAAGCAGGGAAAGAGGTGGTAGAATAAAAAAAAGGTGGTTTGGTGATATGTTTCAGTTGTTCTTTTTTCTGTTTTGTTTGGACGCAATAAATCCT] [+] EMBL BX469778 [AATCGCACGAGGTTGNGTGCAGCAGTTCCTCTACACACTGTGGAGCTT ATTTCAATAGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGTAGTGATTTCGAAAAAAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGATAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTGNGCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCACGGTGAGCTATCTGAAGGGTGCACGGCTAGAGCGATGAAGGTCATCATCGACGCCAACACGGGTACGGGCGGGACGAAACCGTAGCAATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGATAACTCAAGTCATTGCCAAAAGCATCGCGACACGCAAATACATTGGGAGTAGTTAAATAGGCCACAGACCAAATACCATAGA ] [+] EMBL AL694132 [ gcGTGCAGCAGTTCCTCTACACACTGTGGAGCTTAATTTCAATTGCACTAGCATTGTTGTTC ] [+] EMBL BX624903 [ CAGCAGTTCCTCTACACACTGTGGAGCTTAATTTCAATTGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGAAGTGATTTCG AAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGACAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGAT ] [+] EMBL BX625862 [ AGTTCCTCTACACACTGTGGAGCTTAATTTCAATTGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGAAGTGATTTCG AAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGACAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTG CCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCAC GTGAGCTATCTGAAGGGTGCACGGCTAG GCGATGAA GTCATCATCGACGCCAACAC GGTACGGGCGGGACGAAACC TAGC ATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGATAACTCAA TCATTGCC AAAGCATCGC ACAC CAAATACATTGGAAGTAGTTAAATAGG CACAGACCAAATACCATAGAAATGGACATACAAGCAGGGAAAGAGGTGGTAGAATAAAAAAAAGGTGGTTTGGTGATATGTTTCAGTTGTTCTTTTTTCTGTTTTGTTTGGACGCAATAAATCCT] consensusID : consensus_6780#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 725 fasta sequence [CCTACTGNGACAGTAGCCAAACAAACAAAGTCCGTCGAGCGTGCAGCAGTTCCTCTACACACTGTGGAGCTTAATTTCAATAGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGTAGTGATTTCGAAAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGATAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTGCCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCACGTGAGCTATCTGAAGGGTGCACGGCTAGGCGATGAAGTCATCATCGACGCCAACACGGTACGGGCGGGACGAAACCTAGCATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGATAACTCAATCATTGCCAAAGCATCGCACACCAAATACATTGNGAGTAGTTAAATAGGCACAGACCAAATACCATAGAAATGGACATACAAGCAGGGAAAGAGGTGGTAGAATAAAAAAAGGTGGTTTGGTGATATGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CNS091PM [CCTACTGNGACAGTAGCCAAACAAACAAAGTCCGTCGAGCGTGCAGCAGTTCCTCTACACACTGTGGAGCTTAATTTCAATAGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGTAGTGATTTCGAAAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGATAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTGCCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCACGTGAGCTATCTGAAGGGTGCACGGCTAGGCGATGAAGTCATCATCGACGCCAACACGGTACGGGCGGGACGAAACCTAGCATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGATAACTCAATCATTGCCAAAGCATCGCACACCAAATACATTGNGAGTAGTTAAATAGGCACAGACCAAATACCATAGAAATGGACATACAAGCAGGGAAAGAGGTGGTAGAATAAAAAAAGGTGGTTTGGTGATATGTTTCA ] [-] EMBL CNS091PN [ ATTGTTGTTCGTCTCGAAACATCTCCCGGAACGTAGTTCAGTGTGATTGGTTTGTAGTGATTTCGAAAAAAACGCACAATTCCCCACAATGAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAACGGGTACGATAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCATGGCGGAGTTTAAGGTAGAGGAGGAACATTTGAACCGTGCCGGTGGACTGCATGGTGGCTATACTGCCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAACGCCCGGCGTATCGGTGGACATTCACGTGAGCTATTTGAAGGGTGCACGGCTAGGCGATGAAGTCATCATCGACGCCAACACGGTACGGGCGGGACGAAACCTAGCATTCCTGGAGTGTGAGTTGCGCCACAAGAAAGATAACTCAATCATTGCCAAAGCATCGCACACCAAATACATTGGGAGTAGTTAAATAGGCACAGACCAAATACCATAGAAATGGACATACAAGCAGGGAAAGAGGTGGTAGAATAAAAAAAGGTGGTTTGGTGATA GTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6780#0 ------------------AATCGCACGAGGTT------GNGTGCAGCAGTTCCTCTACAC 36 consensus_6780#1 CCTACTGNGACAGTAGCCAAACAAACAAAGTCCGTCGAGCGTGCAGCAGTTCCTCTACAC 60 ** * ** * ** * ******************** consensus_6780#0 ACTGTGGAGCTTAATTTCAATTGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGA 96 consensus_6780#1 ACTGTGGAGCTTAATTTCAATAGCACTAGCATTGTTGTTCGTCTCGAAACATCTCCCGGA 120 ********************* ************************************** consensus_6780#0 ACGTAGTTCAGTGTGATTGGTTTGAAGTGATTTCGAAAAAA-CGCACAATTCCCCACAAT 155 consensus_6780#1 ACGTAGTTCAGTGTGATTGGTTTGTAGTGATTTCGAAAAAAACGCACAATTCCCCACAAT 180 ************************ **************** ****************** consensus_6780#0 GAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAA 215 consensus_6780#1 GAGCGGCAAAAAGGGTCTCGATCTGTTGCGTACCATCGCTACTGTGATGACCAAAACCAA 240 ************************************************************ consensus_6780#0 CGGGTACGACAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCAT 275 consensus_6780#1 CGGGTACGATAGGTGTTTGCAGCAGCTCGTAATGGTCAGCGGAGGCGATGGACGCTGCAT 300 ********* ************************************************** consensus_6780#0 GGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTA 335 consensus_6780#1 GGCGGAGTTTAAGGTAGAGGAGGAACATCTGAACCGTGCCGGTGGACTGCATGGTGGCTA 360 ************************************************************ consensus_6780#0 TACTGNGCACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAA 395 consensus_6780#1 TACTGC-CACCATCGTAGACGTAGTCACTACGTACGCGCTGATGACGAAGGAAAACGCAA 419 ***** ***************************************************** consensus_6780#0 CGCCCGGCGTATCGGTGGACATTCACGGTGAGCTATCTGAAGGGTGCACGGCTAGAGCGA 455 consensus_6780#1 CGCCCGGCGTATCGGTGGACATTCACG-TGAGCTATCTGAAGGGTGCACGGCTAG-GCGA 477 *************************** *************************** **** consensus_6780#0 TGAAGGTCATCATCGACGCCAACACGGGTACGGGCGGGACGAAACCGTAGCAATTCCTGG 515 consensus_6780#1 TGAAG-TCATCATCGACGCCAACACGG-TACGGGCGGGACGAAACC-TAGCA-TTCCTGG 533 ***** ********************* ****************** ***** ******* consensus_6780#0 AGTGTGAGTTGCGCCACAAGAAAGATAACTCAAGTCATTGCCAAAAGCATCGCGACACGC 575 consensus_6780#1 AGTGTGAGTTGCGCCACAAGAAAGATAACTCAA-TCATTGCCAAA-GCATCGC-ACAC-C 589 ********************************* *********** ******* **** * consensus_6780#0 AAATACATTGGGAGTAGTTAAATAGGCCACAGACCAAATACCATAGAAATGGACATACAA 635 consensus_6780#1 AAATACATTGNGAGTAGTTAAATAGGC-ACAGACCAAATACCATAGAAATGGACATACAA 648 ********** **************** ******************************** consensus_6780#0 GCAGGGAAAGAGGTGGTAGAATAAAAAAAAGGTGGTTTGGTGATATGTTTCAGTTGTTCT 695 consensus_6780#1 GCAGGGAAAGAGGTGGTAGAATAAAAAAA-GGTGGTTTGGTGATATGTTTCAAAAAA--- 704 ***************************** ********************** consensus_6780#0 TTTTTCTGTTTTGTTTGGACGCAATAAATCCT 727 consensus_6780#1 -------AAAAAAAAAAAAAAAAAAAAA---- 725 * ** *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||