These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 963 fasta sequence [ACACTTGTTGAAGTCAGCCATCGGTTGCGTTCCCGTTTGCTCCGTCGAAAGCTAAATGTTGATCATGGAAAAAATTTTCAGCTTCGCTTGGAAGGGAAAGCGTGGCATTGAAAGTAAGGAAGGCGAAGAGCCAGGAGAACATGATGACTACGTGGACGACGAGCAAGGTCTGCAGCGAAAGCACAAGGTCGATACGACGCTCCAGATACATTTCTTCGGAAAGAAGGGTGACAAGGATCTGCAGTACGATGGGTTCTACAACTTCATGAAGAACCTACAGACGGAGGTGCTC-GAGTTGGAATTTTGTGAATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTTGATACGGATGAGTACGACAACTACCTGGACCGTCTGCTGGACAGAGAGGCCAAGGAGAAGGGCGTATCGTTCGACGAATTCCGACAGTTCTGCCAGTTCCTGAACAATCTGGATGACTTTTCGATTGCGATGCGTATGTACACGCTCGCCGATCAACCGATTTCGAAAGATGAGTTTT-CCCGA-GCGGTGAAAATTTGCACCGGTTCTGAGCTGAACTCGCACCTGATCGACACCGTGTTTGCCATCTTCGACGAGGACGGCGATGGGCTGCTCTCGTACAAGGAGTTCATCGCCATCATGAAGGATCGGGTGCACCGTGGATTCAAATCAAACGTGAAATCGGAAGGATGGGAAGCATTCAAGCATTGTCTAAAGCAGGAAATGAAACAAAACGTCTAAAAGATCAGTCCACGCAATAGCAACTCTCTCTCTCTCTATCGCTTCGTTTCTAATAATCTACTATATCTACGATGCCGGTTTTGCCCCCGTCCCAAGGCGATCTAGTTAAATTGTGTTTTTAATCAAACTGTTAAGCATTTTAAAGCTATTTATTTAGTTAGAGAAACGAAAAACAACTTACTGGC] [+] EMBL BX619809 [ACACTTGTTGAAGTCAGCCATCGGTTGCGTTCCCGTTTGCTCCGTCGAAAGCTAAATGTTGATCATGGAAAAAATTTTCAGCTTCGCTTGGAAGGGAAAGCGTGGCATTGAAAGTAAGGAAGGCGAAGAGCCAGGAGAACATGATGACTACGTGGACGACGAGCAAGGTCTGCAGCGAAAGCACAAGGTCGATACGACGCTCCAGATACATTTCTTCGGAAAGAAGGGTGACAAGGATCTGCAGTACGATGGGTTCTACAACTTCATGAAGAACCTACAGACGGAGGTGCTC GAGTTGGAATTTTGTGAATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTTGATACGGATGAGTACGACAACTACCTGGACCGTCTGCTGGACAGAGAGGCCAAGGAGAAGGGCGTATCGTTCGACGAGTTCCGACAGTTCTGCCAGTTCCTGAACAATCTGGATGACTTTTCGATTGCGATGCGCAT ] [+] EMBL BM645494 [ cCGAAAGCACAAGGTCGATACAACGCTCCAGATACATTTCTTCGGAAAAAAGGGTGACAAGGATCTGCAGTACGATGGATTCTACAACTTCATGAAGAACCTACAGACCGAGGTGCTC GAGCTGGAATTTTGTGAATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTCGATACGGATGAGTACGACAACTACCTGGACCGTCTGCTGGACAGAGAGGCCAAGGAGAAGGGCGTATCGTTCGACGAATTCCGACAGTTCTGCCAGTTCCTGAACAATCTGGATGACTTTTCGATTGCGATGCGTATGTACACGCTCGCCGATCAACCGATTTCGAAAGATGAGTTTT CCCGA GCGGTGAAAATTTGCACCGGTTCTGAGCTGAACTCGCACCTGATCGACACCGTGTTTGCCATCTTCGACGAGGACGGCGATGGGCTGCTCTCGTACAAGGAGTTCATCGCCATCATGAAGGATCGGGTGCACCGTGGATTCAAATCAAACGTGAAATCGGAAGGATGGGAAGCATTCAAGCATTGTCTAAAGCAGGAAATGAAACAAAACGTCTAAAAGATCAGTCCACGCAATAGCAACTCTCTCTCTCTCTATCGCTTCGTTTCTAATAATCTACTATATCTACGATGCCGGTTTTGCCCCCGTCCCAAGG ] [+] EMBL BX621366 [ CTTCNGAAAGAAGGGTGACAAGGATCTGCANTACGATGGGTTCTACAACTTCATGAAGAACCTACNNACGGAGGTGCTCTGAGTTGGAATTTTGTGAATTTTCCAANGGCCACTAACGCATCTCCGANGTGGACTTTGCNAAAATCCTACTTCTCTACACCTATCTTGATACNGATGANTACGACAACTACCTGGACCGT ] [+] EMBL BM653772 [ cgtccgGACCGAGGTGCTC GAGCTGGAATTTTGTTTATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTCGATACGGATGAGTACGACAACTACCTGGACCGTCTGCTGGACAGAGAGGCCAAGGAGAAGGGCGTATCGTTCGACGAATTCCGACAGTTCTGCCAGTTCCTGAACAATCTGGATGACTTTTCGATTGCGATGTTTTTGTACACGCTCGCCGATCAACCGATTTCGAAAGATGAGTTTTCCCCCACCCCCCGAAAATTTGCACCGGTTCTGAGCTGAACTCGCACCTGATCGACACCGTGTTTGCCATCTTCGACGAGGACGGCGATGGGCTGCTCTCGTACAAGGAGTTCATCGCCATCATGAAGGATCGGGTGCACCGTGGATTCAAATCAAACGTGAAATCGGAAGGATGGGAAGCATTCAAGCATTGTCTAAAGCAGGAAATGAAACAAAACGTCTAAAAGATCAGTCCACGCAATAGCAACTCTCTCTCTCTCTATCGCTTCGTTTCTAATAATCTACTATATCTACGATGCCGGTTTTGCCCCCGTCCCAAGGCGATCTAGTTAAATTGTGTTTTTAATCAAACTGTTAAGCATTTTAAAGCTATTTATTTAGTTAGAGAAACGAAAAACAACTTACTGGC] consensusID : consensus_6784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [TGCTACACTTGTTGAAGTCAGCCATCGGTTGCGTTCCCGTTTGCTCCGTCGAACGCTAAATGTTGATCGTAAGTTGTCCCCGTCGTCGTCGTGGTGAATGTTTCGTGAAGCCTTTGTGTTCGCTGTGTCGCTCCCATCCTCGGGGTTTCCATCGCTGTTAATAGTTGTGCTGTGCCCCCCCTCCCCCTGTGTGGCAATATGGTCCGTTTGGTCTCTGTGTAGTGTACGGATGTCGACAACGGTTCCCGGGGTTTAATATGGTGGCGAGCCTATTGTACAAAACATCACCCTTTTCCTCGTCCATGTGGAAAATTCAAAATGTTGTGTACGAAATGTGTATTGGTCGCGGGATCGTCCATTGCTGTCGTCCGGTCCTCCTTGTGCTGTAACCTGTGCGTGCACGTACTCATATCTACATTCGTAAAAGTAATCCGTAGAAAAGCTCACCATGTGTATAGTGTGTTTGGGACTAAAACAAAAAAACAACAAATAGAACTCGTCTTTGAATTGCTAATGGACATGGTCTGATTTAATTATCCATTTATTTCCTTTCATCGCTTACAATTCACACGCTCCGTCACGTGCTGGTACGAAAAGATGGAAAAAATTTTCAGCTTCGCTTGGAANGGAAAGCGTGGCATTGAAAGTAAGGAANGCGNAAGAGCCAGGAGAACATGATGACTACGTGGGACCGACGAGCAAGGTCTGCAGCGAAAGCACAAGGTCGATACGACNCTCCAAATACATT] [+] EMBL BX623205 [TGCTACACTTGTTGAAGTCAGCCATCGGTTGCGTTCCCGTTTGCTCCGTCGAACGCTAAATGTTGATCGTAAGTTGTCCCCGTCGTCGTCGTGGTGAATGTTTCGTGAAGCCTTTGTGTTCGCTGTGTCGCTCCCATCCTCGGGGTTTCCATCGCTGTTAATAGTTGTGCTGTGCCCCCCCTCCCCCTGTGTGGCAATATGGTCCGTTTGGTCTCTGTGTAGTGTACGGATGTCGACAACGGTTCCCGGGGTTTAATATGGTGGCGAGCCTATTGTACAAAACATCACCCTTTTCCTCGTCCATGTGGAAAATTCAAAATGTTGTGTACGAAATGTGTATTGGTCGCGGGATCGTCCATTGCTGTCGTCCGGTCCTCCTTGTGCTGTAACCTGTGCGTGCACGTACTCATATCTACATTCGTAAAAGTAATCCGTAGAAAAGCTCACCATGTGTATAGTGTGTTTGGGACTAAAACAAAAAAACAACAAATAGAACTCGTCTTTGAATTGCTAATGGACATGGTCTGATTTAATTATCCATTTATTTCCTTTCATCGCTTACAATTCACACGCTCCGTCACGTGCTGGTACGAAAAGATGGAAAAAATTTTCAGCTTCGCTTGGAANGGAAAGCGTGGCATTGAAAGTAAGGAANGCGNAAGAGCCAGGAGAACATGATGACTACGTGGGACCGACGAGCAAGGTCTGCAGCGAAAGCACAAGGTCGATACGACNCTCCAAATACATT] consensusID : consensus_6784#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CCGAGGCTCGCCACCATATTAAACACCCTTTTCCTCGTCCATGTGGAAAATCCAAAATGTTGTGTACGAAATGTGTATTGGTCGCGGGATCGTCCATTGCTGTCGTCCGGTCCTCCTTGTGCTGTAACCTGTGCGTGCACGTACTCATATCTACATTCGTAAAAGTAATCCGTAGAAAAGCTCACCATGTGTATAGTGTGTTTGGGACTAAAACAAATAAAAAAGCAACAAATAGAACGCGCTTTTGAATTGCTAATGGACTGATTTAATTATCCTTTTATTTCCTTTCATCGCTTACAATTCACACGCTCCGTCACGTGCTGGTACGAAAAGATGGAAAAAATTTTCAGCTTCGCTTGGAAGGGAAAGCGTGGCATTGAAAGTAAGGAAGGCGAAGAGCCAGGAGAACATGATGACTACGTGGACGACGAGCAAGGTCTGCAGCGAAAGCACAAGGTCAATACAACGCTCCAGATACATTTCTTCGGAAAAAAGGGTGACAAGGATCTGCAGTACGATGGATTCTACAACTTCATGAAGAACCTACAGACCGAGGTGCTCGAGCTGGAATTTTGTGAATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTCG] [+] EMBL BM581334 [CCGAGGCTCGCCACCATATTAAACACCCTTTTCCTCGTCCATGTGGAAAATCCAAAATGTTGTGTACGAAATGTGTATTGGTCGCGGGATCGTCCATTGCTGTCGTCCGGTCCTCCTTGTGCTGTAACCTGTGCGTGCACGTACTCATATCTACATTCGTAAAAGTAATCCGTAGAAAAGCTCACCATGTGTATAGTGTGTTTGGGACTAAAACAAATAAAAAAGCAACAAATAGAACGCGCTTTTGAATTGCTAATGGACTGATTTAATTATCCTTTTATTTCCTTTCATCGCTTACAATTCACACGCTCCGTCACGTGCTGGTACGAAAAGATGGAAAAAATTTTCAGCTTCGCTTGGAAGGGAAAGCGTGGCATTGAAAGTAAGGAAGGCGAAGAGCCAGGAGAACATGATGACTACGTGGACGACGAGCAAGGTCTGCAGCGAAAGCACAAGGTCAATACAACGCTCCAGATACATTTCTTCGGAAAAAAGGGTGACAAGGATCTGCAGTACGATGGATTCTACAACTTCATGAAGAACCTACAGACCGAGGTGCTCGAGCTGGAATTTTGTGAATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6784#1 TGCTACACTTGTTGAAGTCAGCCATCGGTTGCGTTCCCGTTTGCTCCGTCGAACGCTAAA 60 consensus_6784#2 ------------------------------------------------------------ consensus_6784#0 ----ACACTTGTTGAAGTCAGCCATCGGTTGCGTTCCCGTTTGCTCCGTCGAAAGCTAAA 56 consensus_6784#1 TGTTGATCGTAAGTTGTCCCCGTCGTCGTCGTGGTGAATGTTTCGTGAAGCCTTTGTGTT 120 consensus_6784#2 ------------------------------------------------------------ consensus_6784#0 TGTTGATCATGGAAAAAATTT-TCAGCTTCGCTTGGAAGGGAAAGCGTGGCATTGAAAGT 115 consensus_6784#1 CGCTGTGTCGCTCCCATCCTCGGGGTTTCCATCGCTGT-TAATAGTTGTGCTGTGCCCCC 179 consensus_6784#2 ------------------------------------------------------------ consensus_6784#0 AA--GGAAGGCGAAGAGCCAGGAGAACATGATGACTACGTGGACGACGAGCAAGGTCTGC 173 consensus_6784#1 CCTCCCCCTGTGTGG-CAATATGGTCCGTTTGGTCTCTGTGTAGTGTACGGATGTCGACA 238 consensus_6784#2 ------------------------------------------------------------ consensus_6784#0 AGCGAAAGCACAAGGTCGATACGACGCTCCAGATACATTTCTTCGGAAAGAAGGGTGACA 233 consensus_6784#1 ACGGTTCCCGGGGTTTAATATGGTGGCGAGCCTATTGTACAAAACATCACCCTTTTCCTC 298 consensus_6784#2 --------------------CCGAGGCTCGCC-ACCATATTAAACA---CCCTTTTCCTC 36 consensus_6784#0 AGGAT--CTGCAGTACGATGGGTTCTACAACT--TCATGAAGAACCT-ACAGACGGAGGT 288 * * *** * consensus_6784#1 GTCCATGTGGAAAATTCAAAATGTTGTGTACGAAATGTGTATTGGTCGCGGGATCGTCCA 358 consensus_6784#2 GTCCATGTGGAAAATCCAAAATGTTGTGTACGAAATGTGTATTGGTCGCGGGATCGTCCA 96 consensus_6784#0 GCTCGAGTTGGAATTTTGTGA-ATTTTCCAAGGGCCACGAACGCATCTCCGAGGTGGACT 347 * * ** * ** * * ** * * * * * ** * * * * consensus_6784#1 TTGCTGTCGTCCGGTCCTCCT---TGTGCTGTAACCTGTGCGTGCACG-----TACTCAT 410 consensus_6784#2 TTGCTGTCGTCCGGTCCTCCT---TGTGCTGTAACCTGTGCGTGCACG-----TACTCAT 148 consensus_6784#0 TTGCGAAAATCCTACTTCGCTACACCTATCTTGATACGGATGAGTACGACAACTACCTGG 407 **** *** ** * * * * * * *** *** consensus_6784#1 ATCTACATTCGTAAAAGTAATCCGTAGAAAAGCTCACCATGTGTATAGTGTGTTTGGGAC 470 consensus_6784#2 ATCTACATTCGTAAAAGTAATCCGTAGAAAAGCTCACCATGTGTATAGTGTGTTTGGGAC 208 consensus_6784#0 ACCGTCTGCTGGACAGAGAGGCCAAGGAGAAGGGCGTATCGTTCGACGAAT-TCCGACAG 466 * * * * * * * ** ** *** * ** * * * * * consensus_6784#1 TAAAACAAA----AAAACAACAAATAGAACTCGTCT-TTGAATTGCTAATGGACATGGTC 525 consensus_6784#2 TAAAACAAATAAAAAAGCAACAAATAGAACGCGCTT-TTGAATTGCTAATGGAC------ 261 consensus_6784#0 TTCTGCCAGTTCCTGAACAATCTGGATGACTTTTCGATTGCGATGCGTATGTACACGCTC 526 * * * * *** * ** *** *** *** ** consensus_6784#1 --TGATTTAATTATCC-----ATTTATTTCCTTTCATCGCTTACAATTCACAC--GCTCC 576 consensus_6784#2 --TGATTTAATTATCC-----TTTTATTTCCTTTCATCGCTTACAATTCACAC--GCTCC 312 consensus_6784#0 GCCGATCAACCGATTTCGAAAGATGAGTTTTCCCGAGCGGTGAAAATTTGCACCGGTTCT 586 *** * ** * * ** * ** * * **** *** * ** consensus_6784#1 GTCACGTGCTGGTACGAAAAGATGGAAAAAATTTTCAGCTTCGCTTGGAANGGAAA-GCG 635 consensus_6784#2 GTCACGTGCTGGTACGAAAAGATGGAAAAAATTTTCAGCTTCGCTTGGAAGGGAAA-GCG 371 consensus_6784#0 GAGCTGAACTCGCACCTGATCGACACCGTGTTTGCCATCTTCGACGAGGACGGCGATGGG 646 * * ** * ** * ** ** ***** * * ** * * * consensus_6784#1 TGGCATTGAAAGTAAGGAANGCGNAAGAGCCAGGAGAACATGATGACTACGTGGGACCGA 695 consensus_6784#2 TGGCATTGAAAGTAAGGAAGGCGAA-GAGCCAGGAGAACATGATGACTACGTGGA--CGA 428 consensus_6784#0 CTGCTCTCGTA-CAAGGAGTTCATCGCCATCATGAAGGATCGGGTGCACCGTGGATTCAA 705 ** * * ***** * ** ** * * ***** * * consensus_6784#1 CGAGCAAGGTCTGCAGCGAAAGCACAAGGTCGATACGA-CNCT-CCAAATACATT----- 748 consensus_6784#2 CGAGCAAGGTCTGCAGCGAAAGCACAAGGTCAATACAA-CGCT-CCAGATACATTTCTTC 486 consensus_6784#0 --ATCAAACGTGAAATCGGAAGGATGGGAAGCATTCAAGCATTGTCTAAAGCAGGAAATG 763 * *** * ** *** * * ** * * * * * * ** consensus_6784#1 ------------------------------------------------------------ consensus_6784#2 GGAAAAAAGGGTGACAAGGATCTGCAGTACGATGGATTCTACAACTTCATGAAGAACCTA 546 consensus_6784#0 AAACAAAACGTCTAAAAGATCAGTCCACGCAATAGCAACTCTCTCTCTCTCTATCGCTTC 823 consensus_6784#1 ------------------------------------------------------------ consensus_6784#2 CAGACCGAGGTGCTCGAGCTGGAATTTTGTGAATTTTCCAAGGGCCACGAACGCATCTCC 606 consensus_6784#0 GTTTCTAATAATCTACTATATCTACGATGCCGGTTTTGCCCCCGTCCCAAGGCGATCTAG 883 consensus_6784#1 ------------------------------------------------------------ consensus_6784#2 GAGGTGGACTTTGCGAAAATCCTACTTCGCTACACCTATCTCG----------------- 649 consensus_6784#0 TTAAATTGTGTTTTTAATCAAACTGTTAAGCATTTTAAAGCTATTTATTTAGTTAGAGAA 943 consensus_6784#1 -------------------- consensus_6784#2 -------------------- consensus_6784#0 ACGAAAAACAACTTACTGGC 963 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||