These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 808 fasta sequence [CCGCCCACGCGTCCGTCGGGAAGTGCGGTTCGTTGGTGAAGCAGTCCGAAACAGTGACAGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAACACACCGTCCGGAAGTTGAAGTGATCGTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTCGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGG-CACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTGCCCATAGTCGGCAACACACCGTACATACGCAAGCTCGCCCGTCAGTACGGTGGACAGCATAAGGTGTTCGAGCTGCTCGGTAAAACCTATCGCAGCGATGTGATCGGCCTGAAGCTGGG-CCGTGAGTACGTGGTCGTGGCGCTCAACTACCCCGCCGTGAACGAGGTACACCGGAACGATGTCTTTACCGGGCGGCCGATAACTTCTTCATTCGCTTGCGAACGACTGGGGACACGACTGGGTGTAACCTGATACGGATGGTGCGCTACTGGGCGGCAGCATCGTAATTTNGTAACGCGCCACCTCCGGC] [+] EMBL BM628968 [CCGCCCACGCGTCCGTCGGGAAGTGCGGTTCGTTGGTGAAGCAGTCCGAAACAGTGACAGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAACACACCGTCCGGAAGTTGAAGTGATCGTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTCGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGG CACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTGCCCATAGTCGGCAACACACCGTACATACGCAAGCTCGCCCGTCAGTACGGTGGACAGCATAAGGTGTTCGAGCTGCTCGGTAAAACCTATCGCAGCGATGTGATCGGCCTGAAGCTGGG CCGTGAGTACGTGGTCGTGGCGCTCAACTACCCCGCCGTGAACGAGGTACAC ] [+] EMBL AL693399 [ ccgaggttATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTTTATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGT GCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGGACACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTG CCATAGTCGGCAACACACCGTACATACGCAAGCTCGCCCGTCAGTACGGTGGACAGCATAAGGTGTTCGAGCTGCTCGGTAAAACCTATCGCAGCGATGTGATCGGCCTGAAGCTGGGACCGTGAGTACGTGGTCGTGGCGCTCAACTAACCCGCCGTGAACGAGGTACACCGGAACGATGTCTTTACCGGGCGGCCGATAACTTCTTCATTCGCTTGCGAACGACTGGGGACACGACTGGGTGTAACCTGATACGGATGGTGCGCTACTGGGCGGCAGCATCGTAATTTNGTAACGCGCCACCTCCGGC] consensusID : consensus_6785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [CCCNAGGTTATATGCGTACGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGCTAACTGTGGCCCTGTTGTGCACTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCACCATGGCTGCCCATAGTCGGAAACACCGTACATACGCAAGCTCGCCCGTCAGTACGGTGGACCAGATAAGGTGTTCGAGCTGCTCGGAAACCTACGAGGATGTGATCGGCTGAAACTTGGGTTCGCGAGTAACGTTGGTCGTGGGCGGCTCAAAGTACCCCGCGCGTGAAACGAGGGTACANCCGGGAACCGATTGGTTCTTTTAAACCGGGTTCCGGGCCCGGATTAAACTTTCTTTTCCATTTTCCGGCATTTTGCCTGAACCAGAATGGGGGTTACCACNGAACTTCCGGGGTTAACCCTGGCANTCGGGAACCGGGTTGGCGTTTCTGGGGCCGGGAAGGCATTCAGTAAACCTTTTGGTAACCCNGGCCCACCCCTTCCCGNGCAGGTCCAGAGGAGNTAACGGGCCAGGGCACACCCCTTAATTGCACGGTTGCCATGAATCCCAAGAAACAGGAGCCTTGGAACCGGAGCCTGNGATTCCGGATGGTGAT] [+] EMBL AL692871 [CCCNAGGTTATATGCGTACGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGCTAACTGTGGCCCTGTTGTGCACTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCACCATGGCTGCCCATAGTCGGAAACACCGTACATACGCAAGCTCGCCCGTCAGTACGGTGGACCAGATAAGGTGTTCGAGCTGCTCGGAAACCTACGAGGATGTGATCGGCTGAAACTTGGGTTCGCGAGTAACGTTGGTCGTGGGCGGCTCAAAGTACCCCGCGCGTGAAACGAGGGTACANCCGGGAACCGATTGGTTCTTTTAAACCGGGTTCCGGGCCCGGATTAAACTTTCTTTTCCATTTTCCGGCATTTTGCCTGAACCAGAATGGGGGTTACCACNGAACTTCCGGGGTTAACCCTGGCANTCGGGAACCGGGTTGGCGTTTCTGGGGCCGGGAAGGCATTCAGTAAACCTTTTGGTAACCCNGGCCCACCCCTTCCCGNGCAGGTCCAGAGGAGNTAACGGGCCAGGGCACACCCCTTAATTGCACGGTTGCCATGAATCCCAAGAAACAGGAGCCTTGGAACCGGAGCCTGNGATTCCGGATGGTGAT] consensusID : consensus_6785#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 572 fasta sequence [CCGGTGCTCTCGGGAAGTGCGGTTCGTTGGTGAAGCAGTCCGAAACAGTGACAGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAACACACCGTCCGGAAGTTGAAGTGATCGTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTAAGCCAATTGGGCCGCTCTTCGATAGCAGGAACGTGTGAACGCGTGGTCGGGTTGACTTCCGCCGTATCGCAGTCACACGGCTCGGCAGACCA] [+] EMBL BM637773 [CCGGTGCTCTCGGGAAGTGCGGTTCGTTGGTGAAGCAGTCCGAAACAGTGACAGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAACACACCGTCCGGAAGTTGAAGTGATCGTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTAAGCCAATTGGGCCGCTCTTCGATAGCAGGAACGTGTGAACGCGTGGTCGGGTTGACTTCCGCCGTATCGCAGTCACACGGCTCGGCAGACCA] [+] EMBL BX628990 [ TAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGGGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGCCTAACTGTGGCCCTGTTGTGCACTTATCCCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTAAGCCAATTGGGCCGCTCTTCGATAGCAGGAACGTGTGAACGCGTGGTCGGGTTGACTTCCGCCATATCGCAGGCACACGGCTCGGCAG ] consensusID : consensus_6785#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [GGCACCANGGTGCTCTCGGGAAGTGCGGTTCGTTGGTGAAGCAGTCCGAAACAGTGACAGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAACACACCGTCCGGAAGTTGAAGTGATCGTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTGCCATAGTCGGCAACACACCGTACATACGCAAGCTCGCCCGTCAGTAC] [+] EMBL AL934551 [GGCACCANGGTGCTCTCGGGAAGTGCGGTTCGTTGGTGAAGCAGTCCGAAACAGTGACAGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAACACACCGTCCGGAAGTTGAAGTGATCGTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGAACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAGTAATCGATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCAATTAATAGTCAACGGCACCCGGATCCGTGTGAGCTGATCTCGCAGGCGTAACGTTATGCAACGTCGTGTCTAAAGCCGTACCGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCATCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTGCCATAGTCGGCAACACACCGTACATACGCAAGCTCGCCCGTCAGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6785#2 ------CCGGTGCTC-TCGGGAAGTGCGGTTCGTTG-GTGAAGCAGTCCGAAACAGTGAC 52 consensus_6785#3 GGCACCANGGTGCTC-TCGGGAAGTGCGGTTCGTTG-GTGAAGCAGTCCGAAACAGTGAC 58 consensus_6785#0 -CCGCCCACGCGTCCGTCGGGAAGTGCGGTTCGTTG-GTGAAGCAGTCCGAAACAGTGAC 58 consensus_6785#1 ------CCCNAGGTTATATGCGTACGAAATCAGCTGTGCCGCGCGGTCCGATACAGAGAA 54 * * * * * * ** * ** ****** **** ** consensus_6785#2 AGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAAC-ACACCGTCCGGAAG 111 consensus_6785#3 AGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAAC-ACACCGTCCGGAAG 117 consensus_6785#0 AGACAGACAGCCACTGAGTGGCTGAATTGCGTCAACTTTTGCAAC-ACACCGTCCGGAAG 117 consensus_6785#1 TGTTCGCCATCCTTCT--CGGCTAACTGTGGCCCTGTTGTGCACTTATCTCATCAATGAA 112 * * ** ** **** * * * * ** **** * * ** * consensus_6785#2 TTGAAGTGATC-GTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGA 170 consensus_6785#3 TTGAAGTGATC-GTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGA 176 consensus_6785#0 TTGAAGTGATC-GTCGCCAAACGGTCGCGTGTGCTAGTGTGCAGTGCAACAGAGCATAGA 176 consensus_6785#1 TTTCGTCGACCAGCCAACTATCCGCCGGGT-CACCATGGCTGCCCATAGTCGGAAACACC 171 ** ** * * * * * * * ** ** * * * * * * * consensus_6785#2 ACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAG--TAATCG- 227 consensus_6785#3 ACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAG--TAATCG- 233 consensus_6785#0 ACGTCAATTGAAACCCCTTAAACATCTCACTAGAGTGAACAAAGGAATCAG--TAATCG- 233 consensus_6785#1 GTACATACGCAAGCTCGCCCGTCAGTACGGTGGACCAGATAAGGTGTTCGAGCTGCTCGG 231 * ** * * ** * * ** * ** * ** * *** consensus_6785#2 ATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCA-ATTAATAGTCAAC 286 consensus_6785#3 ATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCA-ATTAATAGTCAAC 292 consensus_6785#0 ATGTGTGTGTGTATGTGTGTCGCCACCCGGTTGTGCATTAGAATCA-ATTAATAGTCAAC 292 consensus_6785#1 AAACCTACGAGGATGTG-ATCGGCTGAAACTTGGGTTCGCGAGTAACGTTGGTCGTGGGC 290 * * * * ***** *** * *** * ** * * ** * ** * consensus_6785#2 GGCACCCGGATCC----GTGTGAGCTGATCTCGCAGGCGTAAC-------GTTATGCAAC 335 consensus_6785#3 GGCACCCGGATCC----GTGTGAGCTGATCTCGCAGGCGTAAC-------GTTATGCAAC 341 consensus_6785#0 GGCACCCGGATCC----GTGTGAGCTGATCTCGCAGGCGTAAC-------GTTATGCAAC 341 consensus_6785#1 GGCTCAAAGTACCCCGCGCGTGAAACGAGGGTACANCCGGGAACCGATTGGTTCTTTTAA 350 *** * * ** * **** ** ** ** * *** * * consensus_6785#2 GTCGTGTCTAAAGCC-GTACCGAAAT--------CAGCTGT-GCCGCGCGGTCCGATACA 385 consensus_6785#3 GTCGTGTCTAAAGCC-GTACCGAAAT--------CAGCTGT-GCCGCGCGGTCCGATACA 391 consensus_6785#0 GTCGTGTCTAAAGCC-GTACCGAAAT--------CAGCTGTCGCCGCGCGGTCCGATACA 392 consensus_6785#1 ACCGGGTTCCGGGCCCGGATTAAACTTTCTTTTCCATTTTCCGGCATTTTGCCTGAACCA 410 ** ** *** * * ** * ** * * * * * ** ** consensus_6785#2 GA----GAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCA 441 consensus_6785#3 GA----GAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCA 447 consensus_6785#0 GA----GAATGTTCGCCATCCTTCTCGGTCTCACGGTGGCACTGTTGTGCGCTTATCTCA 448 consensus_6785#1 GAATGGGGGTTACCACNGAACTTCCGGGGTTAACCCTGGCANTCGGGAACCGGGTTGGCG 470 ** * * * * **** ** * ** ***** * * * * * consensus_6785#2 TCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTAAGCCAATTGGGCCGCTCTTCG 501 consensus_6785#3 TCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTGCCA-TAGTCG 506 consensus_6785#0 TCAATGAATTTCGTCGACCAGCCAACTATCCGCCGGGTCCACCATGGCTGCCCATAGTCG 508 consensus_6785#1 TTTCTGGGGCCGGGAAGGCATTCAGTAAACCTTTTGGTAACCCNGGCCCACCCCTTCCCG 530 * ** * ** ** * ** *** ** ** * ** consensus_6785#2 ATAGCAGGAACGTGTGAACGCGTGGTCGGGT-TGACTTCCGC------CGTATCGCAGTC 554 consensus_6785#3 GCAACAC-ACCGTACATACGCAAGCTCGCCCGTCAGTAC--------------------- 544 consensus_6785#0 GCAACAC-ACCGTACATACGCAAGCTCGCCCGTCAGTACGGTGGACAGCATAAGGTGTTC 567 consensus_6785#1 NGCAGGTCCAGAGGAGNTAACGGGCCAGGGCACACCCCTTAA-----TTGCACGGTTGCC 585 * * * consensus_6785#2 ACACGGCTCGGCAGACCA------------------------------------------ 572 consensus_6785#3 ------------------------------------------------------------ consensus_6785#0 GAGCTGCTCGGTAAAACCTATCGCAGCGATGTGATCGGCCTGAAGCTGGGCCGTGAGTAC 627 consensus_6785#1 ATGAATCCCAAGAAACAGGAGCCTTGGAACCGGAGCCTGNGATTCCGGATGGTGAT---- 641 consensus_6785#2 ------------------------------------------------------------ consensus_6785#3 ------------------------------------------------------------ consensus_6785#0 GTGGTCGTGGCGCTCAACTACCCCGCCGTGAACGAGGTACACCGGAACGATGTCTTTACC 687 consensus_6785#1 ------------------------------------------------------------ consensus_6785#2 ------------------------------------------------------------ consensus_6785#3 ------------------------------------------------------------ consensus_6785#0 GGGCGGCCGATAACTTCTTCATTCGCTTGCGAACGACTGGGGACACGACTGGGTGTAACC 747 consensus_6785#1 ------------------------------------------------------------ consensus_6785#2 ------------------------------------------------------------ consensus_6785#3 ------------------------------------------------------------ consensus_6785#0 TGATACGGATGGTGCGCTACTGGGCGGCAGCATCGTAATTTNGTAACGCGCCACCTCCGG 807 consensus_6785#1 ------------------------------------------------------------ consensus_6785#2 - consensus_6785#3 - consensus_6785#0 C 808 consensus_6785#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||